View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4659-Insertion-7 (Length: 605)
Name: NF4659-Insertion-7
Description: NF4659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4659-Insertion-7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 582; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 8 - 605
Target Start/End: Original strand, 29718474 - 29719071
Alignment:
| Q |
8 |
gctttctcctccaagctctattcaatatattttccatcattattggcattaaattttgttttgttgtccttccagtctttatgcttattgctatatgcgt |
107 |
Q |
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| T |
29718474 |
gctttctcctccaagctctattcaatatactttccatcattattggcattaaattttgttttgttgtccttccactctttatgcttattgctatatgcgt |
29718573 |
T |
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| Q |
108 |
tggcttttatgcaattcaattgcgtgtgataattatcgagtgataacattaatagtagtataaataaaattgaagctatacttggaagcagactctttag |
207 |
Q |
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| T |
29718574 |
tggcttttatgcaattcaattgcgtgtgataattatcgagtgataacattaatagtagtataaataaaattgaagctatacttggaagcagactctttag |
29718673 |
T |
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| Q |
208 |
cttaacttggaagcaacaagaatctcagttagaaatgaagaagctaagaagggatggagtgtgaattttaaagattggttctgctttcaattttccaact |
307 |
Q |
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| T |
29718674 |
cttaacttggaagcaacaagaatctcagttagaaatgaagaagctaagaagggatggagtgtgaattttaaagattggttctgctttcaattttccaact |
29718773 |
T |
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| Q |
308 |
tttaggaaatgaattagaataaattgagtttgaataaaaagctttcaatttttcttatcttagttgctgtgtgtctgatgagattaaatgttcatttctc |
407 |
Q |
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| T |
29718774 |
tttaggaaatgaattagaataaattgagtttgaatagaaagctttcaatttatcttatcttagttgctgtgtgtctgatgagattaaatgttcatttctc |
29718873 |
T |
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| Q |
408 |
ttgtaagtcgttttacattcctgacatgattgagttacatacattgttcgatcaacaaccaataagatgttttatcgtatgtgggggatgtgtaatctag |
507 |
Q |
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| T |
29718874 |
ttgtaagtcgttttacattcctgacatgattgagttacatacattgttcgatcaacaaccaataagatgttttatcgtatgtgggggatgtgtaatctag |
29718973 |
T |
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| Q |
508 |
tagtcttcttttgcaagtgtcttctagttattatgaatgagagttatttgaatcttcgaatacttatggaaattgcattcttcgaacatttgccctga |
605 |
Q |
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| T |
29718974 |
tagtcttcttttgcaagtgtcttctagttattatgaatgagagttatttgaatcttcgaatacttatggaaattgcattcttcgaacatttgccctga |
29719071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 548 - 593
Target Start/End: Original strand, 29715764 - 29715808
Alignment:
| Q |
548 |
gagttatttgaatcttcgaatacttatggaaattgcattcttcgaa |
593 |
Q |
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| T |
29715764 |
gagttatttgaatcttc-aatacttctggaaattgcattcttcgaa |
29715808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 482
Target Start/End: Original strand, 9575543 - 9575589
Alignment:
| Q |
436 |
attgagttacatacattgttcgatcaacaaccaataagatgttttat |
482 |
Q |
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| T |
9575543 |
attgagttacatacattgttcgatcaataatcattaatatgttttat |
9575589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 435 - 479
Target Start/End: Complemental strand, 38139324 - 38139280
Alignment:
| Q |
435 |
gattgagttacatacattgttcgatcaacaaccaataagatgttt |
479 |
Q |
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| T |
38139324 |
gattgagttgcatacattgttcgatcaacaatcagtacgatgttt |
38139280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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