View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4659-Insertion-8 (Length: 588)
Name: NF4659-Insertion-8
Description: NF4659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4659-Insertion-8 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 4e-95; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 27 - 218
Target Start/End: Complemental strand, 30776127 - 30775938
Alignment:
| Q |
27 |
ttgggacgctggatttctgtcaagattcgggtctcatggtctctagaatggagggaaccgcacgaggctggcttcacatattctgggtgtgggatttagt |
126 |
Q |
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| T |
30776127 |
ttgggacgttggatttctgtcaagattcgggtctcatggtct--agaatggagggaaccgcacgaggctggcttcacatattctgggtgtgggatttagt |
30776030 |
T |
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| Q |
127 |
gaagtattccattttggatttgtaggttgtgttgttgtaggttagcacctgctattggctgtccatgtccattttgtgttactgcattttgt |
218 |
Q |
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| T |
30776029 |
gaagtattccattttggatttgtaggttgtgttgttgtaggttagcacctgctattggctgtccatgtccattttgtgttactgcattttgt |
30775938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 420 - 588
Target Start/End: Complemental strand, 30775801 - 30775633
Alignment:
| Q |
420 |
cttatgaaataagtcgattaaaatttatgcttcgattcaaacaacgtccattgggttgtaacttccgataagttttgtgtgattctcaattacaattgat |
519 |
Q |
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| T |
30775801 |
cttatgaaataagtcgattaaaatttatgcttcgattcaaacaacgtccattgggtcgtaacttccgataagttttgtgtgattctcaattacaattgat |
30775702 |
T |
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| Q |
520 |
aaattttagagatttttaagcaaacttagtagtccgtagagcaatcaccatgttttttctacttggaag |
588 |
Q |
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| T |
30775701 |
aaattttagagatttttaagcaaacttagtggtccgtagagcaatcaccatgttttttctacttggaag |
30775633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 215 - 335
Target Start/End: Complemental strand, 30775912 - 30775793
Alignment:
| Q |
215 |
ttgttgtgtactagagtattttacttatgtttgtttcacctatttgaaagacttgattcatatgctcccaatgtcattccatttttatcataaactgatg |
314 |
Q |
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| T |
30775912 |
ttgttgtgtactagagtattttacttatgtttgtttcacctatttgaaagacttgattcatatgctcccaatgtcattcca-ttttatcataaactgatg |
30775814 |
T |
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| Q |
315 |
catgtcccttcccttatgaaa |
335 |
Q |
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| T |
30775813 |
catgtcccttcccttatgaaa |
30775793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 38807510 - 38807558
Alignment:
| Q |
56 |
ggtctcatggtctctagaatggagggaaccgcacgaggctggcttcaca |
104 |
Q |
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| T |
38807510 |
ggtctcctggtccctagaacggagggaaccgcatgaggctggtttcaca |
38807558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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