View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4659-Insertion-9 (Length: 263)
Name: NF4659-Insertion-9
Description: NF4659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4659-Insertion-9 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 263
Target Start/End: Complemental strand, 23883103 - 23882852
Alignment:
| Q |
12 |
agcccaaaaaacagtccaatttcgggtcttcccctcactcaacaccatatccatactcatatccaaccattgctgcaaatctgcgttgaaaagttccttg |
111 |
Q |
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| T |
23883103 |
agcccaaaaaccagtccaatttcgggtcttcccctcactcaacactatatccatactcatatccaaccattgctgcaaatctgcgttgaaaagttccttg |
23883004 |
T |
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| Q |
112 |
tgatatctaaaattaacagtcctaagcaaacaaccattgctatgggacaatcgcgaagaacatgcaatatcctttcgatagtatctattcagtgatgaca |
211 |
Q |
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| T |
23883003 |
tgatatctaaaattaacagtcctaagcaaacaaccattgctatgggataatcgcgaagaacatgcaatatcctttcgatagtatctattaagtgatgaca |
23882904 |
T |
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| Q |
212 |
gtacgcagttctgagatgcatgtcctgcaaactgctattagttaaccgtcca |
263 |
Q |
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| T |
23882903 |
gtacgcagttctgagatgcatgtcctgcaaactgctattagttaaccgtcca |
23882852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 45 - 261
Target Start/End: Original strand, 23420228 - 23420437
Alignment:
| Q |
45 |
ctcactcaacaccatatccatactcatatccaaccattgctgcaaatctgcgttgaaaagttccttgtgatatctaaaattaacagtcctaagcaaacaa |
144 |
Q |
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| T |
23420228 |
ctcactcaacgccgtatccatactcatctccaaccattgctgcaaatctgcgttgaaaagttccttatgatatctagaattaacggtcttaagcaaacaa |
23420327 |
T |
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| Q |
145 |
ccattgctatgggacaatcgcgaagaacatgcaatatcctttcgatagtatctattcagtgatgacagtacgcagttctgagatgcatgtcctgcaaact |
244 |
Q |
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| T |
23420328 |
ccattgatatgggacaatcgcgaagaacatgcaatgtcgtttcgatagtatctattcagt-------gtatgcagttctgagatgcatgacttgcaatct |
23420420 |
T |
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| Q |
245 |
gctattagttaaccgtc |
261 |
Q |
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| T |
23420421 |
gctattacttaaccgtc |
23420437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 213
Target Start/End: Complemental strand, 23876677 - 23876608
Alignment:
| Q |
144 |
accattgctatgggacaatcgcgaagaacatgcaatatcctttcgatagtatctattcagtgatgacagt |
213 |
Q |
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| T |
23876677 |
accattgctaagagacaaccgcgaagaacatgcaatgtcgttttgatagtttctatacagtggtgacagt |
23876608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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