View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4659_high_10 (Length: 250)
Name: NF4659_high_10
Description: NF4659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4659_high_10 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 2654957 - 2655198
Alignment:
| Q |
1 |
ctcttttgtatttcaagctttctctcttatgaaaaggtattcgcaaaacaatagtagcactttcaaggctagaagcattcagagttttcgaagcatcttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2654957 |
ctcttttgtatttcaagctttctctcttatgaaaaggtattcgcaaaacaatagcagcactttcaaggctagaagcattcagagttttcgaagcatcttg |
2655056 |
T |
|
| Q |
101 |
tttgctgtaagactttttctttggtataatactttttcttgaatgagtaaaatcatacaacacaaattctgtaaccatatagtttccaattactccatct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2655057 |
tttgctgtaagactttttctttggtataacactttttcttgaatgagtaaaatcatacaacacaaattctgtaaccatatagtttccaattactccatct |
2655156 |
T |
|
| Q |
201 |
tctaattcagaacataaactacaagaaactaccatctgtgct |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2655157 |
tctaattcagaacataaactacaagaaactagcatctgtgct |
2655198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University