View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4659_high_3 (Length: 366)
Name: NF4659_high_3
Description: NF4659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4659_high_3 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 366
Target Start/End: Complemental strand, 40615020 - 40614657
Alignment:
| Q |
13 |
tcatcagcaatagaatgaagaatcttatcgtattcaagaatcaagaccaagattctgaacaatagtaggaagacattgagcatcgggacgagagataaca |
112 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40615020 |
tcattagcaatagaatgaagaatcttatcatattcaagaatcaagaccaagattctgaacaatagtaggaagacattgaacatcgggacgagagataaca |
40614921 |
T |
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| Q |
113 |
cggagagtgagattcaccgggtcatgatcatcggtagcgaagatggctgagagagtgtgag----------gacatccaagatgtagggcttttgaaccc |
202 |
Q |
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| T |
40614920 |
cggagagtgagattcaccggctcatgatcatcggtagcgaagatggctgagagagtgtgagtacgagcgcggacatccaagatgtagggcttttgaaccc |
40614821 |
T |
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| Q |
203 |
atgggatcaggaaatgagttccttcaccaacagattctggaagagtgtcgtggaattggtcgacaaggacagaggagtacacagtagttgcagcggcgcc |
302 |
Q |
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| T |
40614820 |
atgggatcaggaaatgagttccttcaccaacagattctggaagagtgccgtggaattggtcgacaaggacagaggagtacacagtagttgcagcggcgcc |
40614721 |
T |
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| Q |
303 |
gagacccaaagccaagcgtgctttcttggagaggatggatgctattgctttgctgcttatcatt |
366 |
Q |
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| T |
40614720 |
gagacccaaagccaagcgagctttcttggagacgatggatgctattgctttgctgcttatcatt |
40614657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 53 - 272
Target Start/End: Complemental strand, 40611046 - 40610817
Alignment:
| Q |
53 |
tcaagaccaagattctgaacaatagtaggaagacattgagcatcgggacgagagataacacggagagtgagattcaccgggtcatgatcatcggtagcga |
152 |
Q |
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| T |
40611046 |
tcaagaccaagattctgaacaatagtaggaagacgttgaacctcgggacgagagataacacggagagtgagattcaccggctcatgatcatcggtagcgg |
40610947 |
T |
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| Q |
153 |
agatggctgagagagtgtga----------ggacatccaagatgtagggcttttgaacccatgggatcaggaaatgagttccttcaccaacagattctgg |
242 |
Q |
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| T |
40610946 |
agatggctgagagcctgtgagtacgagggcggaggtcgaagatgtagggcttttgaacccatgggatcttgaaatgaattcctttgccgacggatctggg |
40610847 |
T |
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| Q |
243 |
aagagtgtcgtggaattggtcgacaaggac |
272 |
Q |
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| T |
40610846 |
aagagtgccgtggaatcggtcgacgaggac |
40610817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 316 - 366
Target Start/End: Complemental strand, 40610743 - 40610693
Alignment:
| Q |
316 |
aagcgtgctttcttggagaggatggatgctattgctttgctgcttatcatt |
366 |
Q |
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| T |
40610743 |
aagcgtgctttcttgaagaggttggatgcttttgcttggctgcttaccatt |
40610693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 239
Target Start/End: Original strand, 1385032 - 1385228
Alignment:
| Q |
53 |
tcaagaccaagattctgaacaatagtaggaagacattgagcatcgggacgagagataacacggagagtgagattcaccgggtcatgatcatcggtagcga |
152 |
Q |
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|||||||| ||||||||||||||||||||||||| || || ||| |||||||||| |||||| ||||||||||||||| | | |||| | |||| || |
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| T |
1385032 |
tcaagaccgagattctgaacaatagtaggaagacgttcagtatcaggacgagagagaacacgaagagtgagattcaccatctgaagatctttggtaccgg |
1385131 |
T |
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| Q |
153 |
agatggctgagagagtgtga----------ggacatccaagatgtagggcttttgaacccatgggatcaggaaatgagttccttcaccaacagattc |
239 |
Q |
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| T |
1385132 |
agatggatgagaatgtgtgaggtcgagtgcggatatcgaagacgtaaggcttttgaacccatgggatgaggaaatgagttccttcaccgactgattc |
1385228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 53 - 130
Target Start/End: Complemental strand, 231814 - 231737
Alignment:
| Q |
53 |
tcaagaccaagattctgaacaatagtaggaagacattgagcatcgggacgagagataacacggagagtgagattcacc |
130 |
Q |
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|||||||||| |||| |||||||||||||||||||||||| ||| |||||||||| |||||| ||||| | ||||||| |
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| T |
231814 |
tcaagaccaaaattccgaacaatagtaggaagacattgagtatcaggacgagagagaacacgaagagtaaaattcacc |
231737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 18133313 - 18133264
Alignment:
| Q |
181 |
aagatgtagggcttttgaacccatgggatcaggaaatgagttccttcacc |
230 |
Q |
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| T |
18133313 |
aagatgtaaggcttttgaacccatgggatgaggaaatgggttccttcacc |
18133264 |
T |
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