View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4659_low_1 (Length: 611)
Name: NF4659_low_1
Description: NF4659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4659_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 48268683 - 48268381
Alignment:
| Q |
1 |
aaagaaaagtttctagaggcaacaaggttaaatactgaaaagtataacggaatcttgacagcaaacaaagcagaaggttactataaaagatagagcaaga |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||| |
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| T |
48268683 |
aaagaaaagtttctaaaggcaacaaggttaaatactgaaaagtataacggaatcttgacagcaaacaaggcagaaggttaatataaaagatagagaaaga |
48268584 |
T |
|
| Q |
101 |
taagtagtttagattgggattctcccacttttttaagcaaagattctcttaaatggtaagagactctaacaagagattgtttccttggtcggcagcaaag |
200 |
Q |
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||||| || |||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48268583 |
taagtggtctagattgggattatcccaattttttaagcaaaggttctcttaaatggtaagagactctaacaagagattgtttccttggtcggcagcaaag |
48268484 |
T |
|
| Q |
201 |
gccacggagtccgggcgcaccgagtcagctcagggaacatagccaacagagtagtaacactaaacaattctaaaaccagagacacaaatctgactccacc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48268483 |
gccacggagtccgggcgcaccgagtcagctcagggaacatagccaacagagtagtaacactaaacaattctaaaaccagagacacaaatctgactccacc |
48268384 |
T |
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| Q |
301 |
tca |
303 |
Q |
| |
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||| |
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| T |
48268383 |
tca |
48268381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 491 - 597
Target Start/End: Complemental strand, 48268193 - 48268087
Alignment:
| Q |
491 |
accgttgaagtttgaaaacctgcaactgaaaacagcatcttggtatcagttgaaaaaaccaccaaaactgtagacaacaagaatcttttgccaagtatgg |
590 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48268193 |
accgttgaagtttgaaaacctgcaactgaaaacagcatcttggtatcagttgaaaaaaccaccaaaactgtagacaacaagaatcttttgccaagtatgg |
48268094 |
T |
|
| Q |
591 |
aataaat |
597 |
Q |
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||||||| |
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| T |
48268093 |
aataaat |
48268087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 366 - 423
Target Start/End: Complemental strand, 48268318 - 48268261
Alignment:
| Q |
366 |
agattcataccataccaccaacacttttacaagcttcaagttccaaatccaacatgtg |
423 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
48268318 |
agattcataccataccaccaacacttttaaaagcttcaagttccaaatccaacatgtg |
48268261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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