View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4659_low_16 (Length: 235)

Name: NF4659_low_16
Description: NF4659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4659_low_16
NF4659_low_16
[»] chr8 (4 HSPs)
chr8 (1-217)||(31709456-31709676)
chr8 (40-216)||(14673843-14674023)
chr8 (105-163)||(18973797-18973855)
chr8 (1-74)||(18973721-18973793)
[»] chr3 (3 HSPs)
chr3 (1-217)||(12208456-12208675)
chr3 (105-163)||(19807848-19807906)
chr3 (1-74)||(19807910-19807982)
[»] chr6 (1 HSPs)
chr6 (1-216)||(4282184-4282401)
[»] chr7 (2 HSPs)
chr7 (105-163)||(5332019-5332077)
chr7 (1-74)||(5332081-5332153)
[»] chr4 (1 HSPs)
chr4 (98-148)||(12325609-12325659)


Alignment Details
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 31709456 - 31709676
Alignment:
Q  1 cgttcatcctcttgttgaaattcgtaaggataacgtaagattatgattggctcctgactta-tattattcgagtcgcgtcagaatttagttttctgctat 99  Q
    |||||||||| |||||||||||| |||   |||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||    
T  31709456 cgttcatccttttgttgaaattcttaaat-taacgtaagattatgattggctcctgacctaatattattcgagtcgcgtcggaatttagttttctgctat 31709554  T
Q  100 tactatactttatgtccgtcgtttgttcgacatgtatataatttggctagcttcgatatacgtgttttcggttttatcatatgttcgattt----tttat 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||    
T  31709555 tactatactttatgtccgtcgtttgttcgacatgtatataatttggctagcttcgatatacgtgttttcggttttatcatatgttcgatttttgatttat 31709654  T
Q  196 ctgatgggaattcagttttggc 217  Q
    ||||  ||||||||||||||||    
T  31709655 ctgagtggaattcagttttggc 31709676  T

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Target: chr8; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 40 - 216
Target Start/End: Original strand, 14673843 - 14674023
Alignment:
Q  40 attatgattggctcctgacttatattattcgagtcgcgtcagaatttagttttctgctattactatactttatgtccgtcgtttgttcgacatgtatata 139  Q
    ||||||||||||||||||| ||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14673843 attatgattggctcctgacctatattatttgagtcacgtcggaatttagttttctgctattactatactttatgtccgtcgtttgtgcgacatgtatata 14673942  T
Q  140 atttggctagcttcgatatacgtgttttcggttttatcatatgttcgattt----tttatctgatgggaattcagttttgg 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||| |||||||||||||||    
T  14673943 atttggctagcttcgatatacgtgttttcggttttatcatatgttcgatttttgatttatctgattggaattcagttttgg 14674023  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 18973797 - 18973855
Alignment:
Q  105 tactttatgtccgtcgtttgttcgacatgtatataatttggctagcttcgatatacgtg 163  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||    
T  18973797 tactttatgtccgtcgtttgtgctacatgtatataatttggctagcttcgagatacgtg 18973855  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 18973721 - 18973793
Alignment:
Q  1 cgttcatcctcttgttgaaattcgtaaggataacgtaagattatgattggctcctgacttatattattcgagtc 74  Q
    |||||||||| |||||| ||||| |||   |||||||||||||||||||||||||||| ||||||||| |||||    
T  18973721 cgttcatccttttgttgcaattcttaaat-taacgtaagattatgattggctcctgacctatattatttgagtc 18973793  T

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Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 12208675 - 12208456
Alignment:
Q  1 cgttcatcctcttgttgaaattcgtaaggataacgtaagattatgattggctcctgacttatattattcgagtcgcgtcagaatttagttttctgctatt 100  Q
    |||||||||| |||||||||||| |||   |||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||    
T  12208675 cgttcatccttttgttgaaattcttaaat-taacgtaagattatgattggctcctgacctatattattcgagtcacgtcggaatttagttttctgctatt 12208577  T
Q  101 actatactttatgtccgtcgtttgttcgacatgtatataatttggctagcttcgatatacgtgttttcggttttatcatatgttcgattt----tttatc 196  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||    
T  12208576 actatactttatgtccgtcatttgttcgacatgtatctaatttggctagcttcgatatacgtgttttcggttttatcatatgttcgatttttgatttatc 12208477  T
Q  197 tgatgggaattcagttttggc 217  Q
    | || ||||||||||||||||    
T  12208476 taattggaattcagttttggc 12208456  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 19807906 - 19807848
Alignment:
Q  105 tactttatgtccgtcgtttgttcgacatgtatataatttggctagcttcgatatacgtg 163  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  19807906 tactttatgtccgtcgtttgtgctacatgtatataatttggctagcttcgatatacgtg 19807848  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 19807982 - 19807910
Alignment:
Q  1 cgttcatcctcttgttgaaattcgtaaggataacgtaagattatgattggctcctgacttatattattcgagtc 74  Q
    |||||||||| |||||| ||||| |||   |||||||||| ||||||||||||||||| ||||||||| |||||    
T  19807982 cgttcatccttttgttgcaattcttaaat-taacgtaagactatgattggctcctgacctatattatttgagtc 19807910  T

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Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 4282401 - 4282184
Alignment:
Q  1 cgttcatcctcttgttgaaattcgtaaggat-aacgtaagattatgattggctcctgacttatattattcgagtcgcgtcagaatttagttttctgctat 99  Q
    |||||||||| |||||| ||||| |||  || |||||||||||| |||||||||||||| ||||||||| ||||| |||| ||||||||||| |||||||    
T  4282401 cgttcatccttttgttgcaattcttaa--atcaacgtaagattacgattggctcctgacctatattatttgagtcacgtcggaatttagttt-ctgctat 4282305  T
Q  100 tactatactttatgtccgtcgtttgttcgacatgtatataatttggctagcttcgatatacgtgttttcggttttatcatatgttcgatt----ttttat 195  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||    
T  4282304 tactatactttatgtccgtcgtttgtgcgacatgtatataatttggctagcttcgatatacgtgttttcggttttatcatatgttcgattgttgatttat 4282205  T
Q  196 ctgatgggaattcagttttgg 216  Q
    ||||| |||||||||||||||    
T  4282204 ctgattggaattcagttttgg 4282184  T

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Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 5332077 - 5332019
Alignment:
Q  105 tactttatgtccgtcgtttgttcgacatgtatataatttggctagcttcgatatacgtg 163  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  5332077 tactttatgtccgtcgtttgtgctacatgtatataatttggctagcttcgatatacgtg 5332019  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 5332153 - 5332081
Alignment:
Q  1 cgttcatcctcttgttgaaattcgtaaggataacgtaagattatgattggctcctgacttatattattcgagtc 74  Q
    |||||||||| |||||| ||||| |||   |||||||||||||||||||||||||||| ||||||||| |||||    
T  5332153 cgttcatccttttgttgcaattcttaaat-taacgtaagattatgattggctcctgacctatattatttgagtc 5332081  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 148
Target Start/End: Original strand, 12325609 - 12325659
Alignment:
Q  98 attactatactttatgtccgtcgtttgttcgacatgtatataatttggcta 148  Q
    ||||| ||||||| ||| |||||||||| ||| ||||||||||||||||||    
T  12325609 attacaatactttttgttcgtcgtttgtgcgatatgtatataatttggcta 12325659  T

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