View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4659_low_2 (Length: 567)
Name: NF4659_low_2
Description: NF4659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4659_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 277 - 551
Target Start/End: Complemental strand, 40614583 - 40614308
Alignment:
| Q |
277 |
aataaataaatgtggcgaaacacctgtgacttgtcgaaggggaaaattatagagttgagnnnnnnntaaatgtggccaaaagggtgtgtgccttgtagaa |
376 |
Q |
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| T |
40614583 |
aataaataaatgtggcgaaacacctgtgacttgtcgaaggggaaaattatagagttgagaaaaaaataaatgtggccaaaagggtgtg--ccttgtagaa |
40614486 |
T |
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| Q |
377 |
gaggaaaattataaaacctgctactaaaacaagaaattaccctcaaacccaaccgaaatagggataataaatctaatttaa---tacaagcaaatcaaat |
473 |
Q |
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| T |
40614485 |
gaggaaaattataaaacctgctactaaaacaagaaattaccctcaaacccaaccgaaatagggataataaatctaatttaatagtacaagcaaatcaaat |
40614386 |
T |
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| Q |
474 |
accatcaaacctaagtaccccaagaaagcaacgtatgctctcaattaaagactgagcacatggagatgcatttatttt |
551 |
Q |
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| T |
40614385 |
accatcaaacctaagtaccccaagaaagcaacgtatgctctcaattaaagactgagcacatggagatgcatttatttt |
40614308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 10 - 201
Target Start/End: Complemental strand, 40614850 - 40614659
Alignment:
| Q |
10 |
ggacatccaagatgtagggcttttgaacccatgggatcaggaaatgagttccttcaccaacagattctggaagagtgtcgtggaattggtcgacaaggac |
109 |
Q |
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| T |
40614850 |
ggacatccaagatgtagggcttttgaacccatgggatcaggaaatgagttccttcaccaacagattctggaagagtgccgtggaattggtcgacaaggac |
40614751 |
T |
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| Q |
110 |
agaggagtacacagtagttgcagcggcgccgagacccaaagccaagcgtgctttcttggagaggatggatgctattgctttgctgcttatca |
201 |
Q |
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| T |
40614750 |
agaggagtacacagtagttgcagcggcgccgagacccaaagccaagcgagctttcttggagacgatggatgctattgctttgctgcttatca |
40614659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 277 - 529
Target Start/End: Complemental strand, 40610622 - 40610375
Alignment:
| Q |
277 |
aataaataaatgtggcgaaacacctgtgacttgtcgaaggggaaaattatagagttgagnnnnnnntaaatgtggccaaaagggtgtgtgccttgtagaa |
376 |
Q |
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| T |
40610622 |
aataaataaatgtcgcgaaacacatgtgacttgtcgaaggggaaaattagagagttgagaaaaaaataaacgtggccaaaagg--gtgtgccttgtagaa |
40610525 |
T |
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| Q |
377 |
gaggaaaattataaaacctgctactaaaacaagaaattaccctcaaacccaaccgaaatagggataataaatctaatttaatacaagcaaatcaaatac- |
475 |
Q |
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| T |
40610524 |
ggggaaaattatacaacctgccactaaaataa-aaattaccctcaaacccaaccgaaacagggataataaatc-----taatacaagaaaatcaaatacc |
40610431 |
T |
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| Q |
476 |
--catcaaacctaagtaccccaagaaagcaacgtatgctctcaattaaagactgag |
529 |
Q |
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| T |
40610430 |
atcatcaaacctaagtaccccaagaaagcaacttaagctctcaattaaagactgag |
40610375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 40610908 - 40610817
Alignment:
| Q |
18 |
aagatgtagggcttttgaacccatgggatcaggaaatgagttccttcaccaacagattctggaagagtgtcgtggaattggtcgacaaggac |
109 |
Q |
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| T |
40610908 |
aagatgtagggcttttgaacccatgggatcttgaaatgaattcctttgccgacggatctgggaagagtgccgtggaatcggtcgacgaggac |
40610817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 40610743 - 40610698
Alignment:
| Q |
153 |
aagcgtgctttcttggagaggatggatgctattgctttgctgctta |
198 |
Q |
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| T |
40610743 |
aagcgtgctttcttgaagaggttggatgcttttgcttggctgctta |
40610698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 1385170 - 1385228
Alignment:
| Q |
18 |
aagatgtagggcttttgaacccatgggatcaggaaatgagttccttcaccaacagattc |
76 |
Q |
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| T |
1385170 |
aagacgtaaggcttttgaacccatgggatgaggaaatgagttccttcaccgactgattc |
1385228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 18133313 - 18133264
Alignment:
| Q |
18 |
aagatgtagggcttttgaacccatgggatcaggaaatgagttccttcacc |
67 |
Q |
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| T |
18133313 |
aagatgtaaggcttttgaacccatgggatgaggaaatgggttccttcacc |
18133264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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