View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4659_low_3 (Length: 467)

Name: NF4659_low_3
Description: NF4659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4659_low_3
NF4659_low_3
[»] chr3 (42 HSPs)
chr3 (17-461)||(1508537-1508981)
chr3 (219-344)||(30956700-30956824)
chr3 (219-344)||(30972512-30972636)
chr3 (222-295)||(31365394-31365467)
chr3 (227-345)||(20170403-20170520)
chr3 (219-345)||(35959529-35959654)
chr3 (219-304)||(944365-944452)
chr3 (227-288)||(402660-402721)
chr3 (235-323)||(12862342-12862429)
chr3 (219-321)||(20880349-20880450)
chr3 (227-323)||(2719349-2719444)
chr3 (220-295)||(19983653-19983728)
chr3 (227-286)||(23815943-23816002)
chr3 (234-323)||(24684918-24685006)
chr3 (237-333)||(29520564-29520658)
chr3 (219-288)||(34235195-34235264)
chr3 (228-293)||(39980610-39980675)
chr3 (233-333)||(46778312-46778411)
chr3 (227-329)||(28795921-28796022)
chr3 (219-269)||(46886835-46886885)
chr3 (237-333)||(5331184-5331278)
chr3 (227-288)||(28240216-28240277)
chr3 (219-288)||(31403240-31403309)
chr3 (233-302)||(53789576-53789645)
chr3 (219-271)||(20003430-20003482)
chr3 (219-255)||(42747913-42747949)
chr3 (244-295)||(30443661-30443712)
chr3 (219-282)||(35328288-35328350)
chr3 (247-302)||(36631166-36631221)
chr3 (219-278)||(38901968-38902027)
chr3 (219-278)||(47132249-47132308)
chr3 (233-287)||(7814265-7814319)
chr3 (233-287)||(12833880-12833934)
chr3 (222-288)||(47249587-47249653)
chr3 (231-304)||(901770-901838)
chr3 (244-345)||(4400943-4401044)
chr3 (277-333)||(29520416-29520470)
chr3 (219-280)||(34034043-34034104)
chr3 (220-273)||(39442321-39442374)
chr3 (259-295)||(139795-139831)
chr3 (219-255)||(21335561-21335597)
chr3 (260-288)||(30574031-30574059)
[»] chr7 (39 HSPs)
chr7 (219-318)||(21568728-21568826)
chr7 (219-345)||(46078019-46078144)
chr7 (219-323)||(23989579-23989682)
chr7 (219-279)||(33678664-33678724)
chr7 (219-333)||(9210500-9210613)
chr7 (227-284)||(38500051-38500108)
chr7 (220-323)||(4970883-4970985)
chr7 (219-345)||(45263965-45264092)
chr7 (227-295)||(3308374-3308442)
chr7 (237-333)||(45806562-45806657)
chr7 (221-288)||(33552940-33553007)
chr7 (219-289)||(33128629-33128699)
chr7 (234-288)||(33672975-33673029)
chr7 (219-319)||(40196249-40196345)
chr7 (227-285)||(47795847-47795905)
chr7 (219-304)||(38138592-38138677)
chr7 (219-295)||(18865172-18865248)
chr7 (219-271)||(27863843-27863895)
chr7 (270-345)||(420283-420357)
chr7 (219-303)||(5947033-5947113)
chr7 (219-302)||(46280374-46280457)
chr7 (268-323)||(48140137-48140191)
chr7 (227-273)||(17248437-17248483)
chr7 (220-286)||(20526641-20526707)
chr7 (219-345)||(45004638-45004763)
chr7 (274-342)||(20258437-20258506)
chr7 (220-345)||(28900760-28900885)
chr7 (219-288)||(39393695-39393763)
chr7 (260-308)||(8704509-8704557)
chr7 (268-342)||(20234402-20234477)
chr7 (219-284)||(19131242-19131307)
chr7 (227-288)||(21619297-21619358)
chr7 (227-288)||(46139832-46139893)
chr7 (236-288)||(7612358-7612410)
chr7 (231-295)||(20428351-20428415)
chr7 (228-288)||(20881755-20881815)
chr7 (219-263)||(22283860-22283904)
chr7 (260-288)||(32714345-32714373)
chr7 (281-333)||(45806411-45806462)
[»] chr4 (38 HSPs)
chr4 (219-333)||(43505830-43505941)
chr4 (219-345)||(50681162-50681287)
chr4 (244-345)||(41336658-41336757)
chr4 (219-288)||(50662851-50662920)
chr4 (231-295)||(15173422-15173486)
chr4 (233-288)||(35571951-35572006)
chr4 (227-304)||(24169141-24169218)
chr4 (219-333)||(25904295-25904412)
chr4 (219-288)||(44863081-44863150)
chr4 (219-275)||(27025-27081)
chr4 (236-288)||(55084593-55084645)
chr4 (270-345)||(54069490-54069564)
chr4 (219-285)||(11389408-11389474)
chr4 (260-333)||(15177287-15177359)
chr4 (274-323)||(31076481-31076529)
chr4 (219-272)||(44797764-44797817)
chr4 (220-288)||(3155486-3155554)
chr4 (244-288)||(21731772-21731816)
chr4 (258-302)||(22030115-22030159)
chr4 (234-333)||(31851343-31851439)
chr4 (244-295)||(40831157-40831211)
chr4 (220-288)||(44138442-44138510)
chr4 (270-321)||(33587051-33587101)
chr4 (219-266)||(47119086-47119133)
chr4 (236-287)||(49004090-49004141)
chr4 (244-333)||(403423-403512)
chr4 (220-285)||(679136-679202)
chr4 (233-287)||(1242401-1242455)
chr4 (234-304)||(18814979-18815048)
chr4 (227-345)||(19494794-19494911)
chr4 (236-286)||(30377813-30377863)
chr4 (228-285)||(4306281-4306338)
chr4 (227-289)||(7839490-7839556)
chr4 (109-166)||(49939875-49939932)
chr4 (236-288)||(2987088-2987140)
chr4 (220-288)||(22539166-22539234)
chr4 (244-288)||(23277320-23277364)
chr4 (270-342)||(42404074-42404145)
[»] chr2 (37 HSPs)
chr2 (227-333)||(32592467-32592572)
chr2 (219-343)||(15305528-15305652)
chr2 (219-333)||(39659594-39659706)
chr2 (219-302)||(41407173-41407256)
chr2 (244-333)||(26201925-26202014)
chr2 (219-288)||(40682492-40682561)
chr2 (241-346)||(42868533-42868637)
chr2 (219-294)||(1633669-1633744)
chr2 (219-303)||(12795664-12795748)
chr2 (236-304)||(33319926-33319994)
chr2 (241-345)||(41241205-41241308)
chr2 (219-286)||(2416195-2416262)
chr2 (219-274)||(15757809-15757864)
chr2 (233-304)||(42659264-42659335)
chr2 (227-277)||(43570306-43570356)
chr2 (227-291)||(31744246-31744308)
chr2 (220-289)||(41851408-41851477)
chr2 (242-345)||(28330372-28330474)
chr2 (219-295)||(41293353-41293431)
chr2 (219-343)||(43279602-43279727)
chr2 (234-304)||(3311931-3312001)
chr2 (233-287)||(5599180-5599234)
chr2 (227-289)||(38010292-38010354)
chr2 (219-288)||(19608744-19608813)
chr2 (268-333)||(20933676-20933740)
chr2 (222-302)||(11863806-11863886)
chr2 (244-300)||(31561870-31561926)
chr2 (245-288)||(2142561-2142604)
chr2 (221-276)||(10619346-10619401)
chr2 (256-294)||(5745522-5745560)
chr2 (219-345)||(12464546-12464671)
chr2 (219-285)||(36534670-36534736)
chr2 (219-304)||(23974603-23974688)
chr2 (220-285)||(26626759-26626824)
chr2 (251-280)||(39567817-39567846)
chr2 (219-267)||(4606863-4606911)
chr2 (129-161)||(32569231-32569263)
[»] chr8 (35 HSPs)
chr8 (219-304)||(14956408-14956493)
chr8 (229-295)||(15179034-15179100)
chr8 (227-304)||(1058187-1058264)
chr8 (239-329)||(38353242-38353330)
chr8 (221-304)||(9130423-9130506)
chr8 (219-343)||(35534686-35534807)
chr8 (244-288)||(40859837-40859881)
chr8 (228-291)||(41821440-41821501)
chr8 (259-304)||(38750270-38750315)
chr8 (219-288)||(2833449-2833519)
chr8 (219-273)||(40981002-40981056)
chr8 (219-334)||(12976088-12976199)
chr8 (227-288)||(26215386-26215447)
chr8 (218-323)||(29168147-29168251)
chr8 (234-323)||(36963440-36963528)
chr8 (237-288)||(2840259-2840310)
chr8 (237-288)||(2844946-2844997)
chr8 (227-342)||(15180421-15180535)
chr8 (260-323)||(32975973-32976035)
chr8 (233-287)||(40637423-40637477)
chr8 (219-288)||(41475179-41475248)
chr8 (228-288)||(10120648-10120708)
chr8 (219-271)||(29819026-29819078)
chr8 (219-287)||(34236044-34236112)
chr8 (219-282)||(37353373-37353437)
chr8 (219-345)||(12497304-12497434)
chr8 (259-289)||(31916537-31916567)
chr8 (233-279)||(41589579-41589625)
chr8 (244-345)||(10758329-10758429)
chr8 (227-304)||(28763253-28763330)
chr8 (253-323)||(30151041-30151113)
chr8 (259-288)||(37444534-37444563)
chr8 (219-282)||(900821-900885)
chr8 (221-281)||(9956938-9956998)
chr8 (244-288)||(10114397-10114441)
[»] chr1 (51 HSPs)
chr1 (219-288)||(5894282-5894351)
chr1 (219-320)||(1510407-1510507)
chr1 (219-304)||(33541821-33541906)
chr1 (219-288)||(47498962-47499031)
chr1 (88-171)||(3069709-3069792)
chr1 (253-343)||(14385838-14385927)
chr1 (219-321)||(37473271-37473372)
chr1 (219-304)||(41195307-41195392)
chr1 (237-321)||(3234120-3234203)
chr1 (227-343)||(14331669-14331784)
chr1 (219-302)||(51688577-51688660)
chr1 (244-302)||(24552455-24552513)
chr1 (234-304)||(42391253-42391323)
chr1 (244-333)||(18556824-18556912)
chr1 (219-304)||(41505559-41505644)
chr1 (219-323)||(30191863-30191966)
chr1 (219-286)||(27146369-27146436)
chr1 (259-321)||(44932029-44932090)
chr1 (219-304)||(1509624-1509709)
chr1 (219-304)||(5741534-5741619)
chr1 (219-304)||(17727208-17727293)
chr1 (219-288)||(22343960-22344029)
chr1 (219-268)||(24562452-24562501)
chr1 (219-288)||(38247326-38247394)
chr1 (219-275)||(6556890-6556946)
chr1 (236-288)||(38116304-38116356)
chr1 (219-286)||(1829075-1829142)
chr1 (233-288)||(9572227-9572282)
chr1 (219-333)||(5709434-5709548)
chr1 (219-277)||(27820470-27820528)
chr1 (219-277)||(33546590-33546648)
chr1 (227-288)||(14576782-14576843)
chr1 (241-288)||(15942237-15942284)
chr1 (220-323)||(29904633-29904734)
chr1 (260-331)||(42174770-42174840)
chr1 (219-281)||(473038-473100)
chr1 (239-273)||(27976372-27976406)
chr1 (219-273)||(30581684-30581738)
chr1 (233-287)||(31774167-31774221)
chr1 (219-285)||(34290121-34290187)
chr1 (219-285)||(45975572-45975638)
chr1 (257-302)||(2295014-2295059)
chr1 (219-304)||(5720853-5720938)
chr1 (244-289)||(11137801-11137846)
chr1 (219-256)||(34795565-34795602)
chr1 (219-288)||(35058873-35058945)
chr1 (220-288)||(7069183-7069251)
chr1 (219-323)||(17830026-17830129)
chr1 (220-271)||(24417817-24417869)
chr1 (244-288)||(33186173-33186217)
chr1 (301-345)||(41184723-41184767)
[»] chr6 (25 HSPs)
chr6 (227-305)||(34430596-34430674)
chr6 (219-295)||(6538389-6538465)
chr6 (234-333)||(18076083-18076181)
chr6 (219-288)||(264253-264322)
chr6 (247-303)||(29754193-29754249)
chr6 (219-302)||(24626167-24626250)
chr6 (259-345)||(12836245-12836330)
chr6 (259-347)||(30536390-30536477)
chr6 (232-305)||(32014161-32014234)
chr6 (227-288)||(35069442-35069503)
chr6 (233-285)||(23063650-23063702)
chr6 (244-302)||(30926435-30926493)
chr6 (241-286)||(10401139-10401184)
chr6 (241-282)||(34882526-34882567)
chr6 (258-346)||(8147614-8147700)
chr6 (236-323)||(35070725-35070812)
chr6 (219-266)||(14929606-14929653)
chr6 (274-333)||(30536643-30536701)
chr6 (233-280)||(32014113-32014160)
chr6 (234-272)||(658580-658618)
chr6 (221-271)||(9632785-9632835)
chr6 (220-266)||(10645470-10645516)
chr6 (245-302)||(6909988-6910045)
chr6 (248-288)||(12628276-12628316)
chr6 (260-304)||(35071203-35071247)
[»] chr5 (40 HSPs)
chr5 (218-323)||(7319106-7319210)
chr5 (219-323)||(3735586-3735689)
chr5 (221-285)||(19460508-19460572)
chr5 (233-288)||(39105360-39105415)
chr5 (219-301)||(32372496-32372578)
chr5 (219-288)||(9202867-9202936)
chr5 (219-323)||(32941343-32941445)
chr5 (219-333)||(13697844-13697957)
chr5 (219-333)||(25461841-25461953)
chr5 (219-296)||(16937988-16938065)
chr5 (244-289)||(42646552-42646597)
chr5 (220-288)||(1465138-1465206)
chr5 (224-288)||(7984865-7984929)
chr5 (219-286)||(10639826-10639892)
chr5 (219-302)||(40439070-40439152)
chr5 (219-301)||(24030518-24030600)
chr5 (219-281)||(32703574-32703636)
chr5 (227-289)||(36797204-36797266)
chr5 (219-288)||(42573898-42573968)
chr5 (228-285)||(12425462-12425519)
chr5 (219-304)||(25460964-25461049)
chr5 (219-288)||(28776857-28776926)
chr5 (259-323)||(16458073-16458136)
chr5 (221-333)||(25461732-25461842)
chr5 (219-302)||(26005353-26005436)
chr5 (222-288)||(39247984-39248051)
chr5 (219-285)||(40848639-40848705)
chr5 (260-333)||(29925754-29925826)
chr5 (234-295)||(31051785-31051846)
chr5 (219-304)||(34907898-34907983)
chr5 (236-288)||(10771997-10772049)
chr5 (273-333)||(36227721-36227780)
chr5 (234-269)||(3569097-3569132)
chr5 (227-270)||(7706126-7706169)
chr5 (270-333)||(42500310-42500372)
chr5 (268-330)||(7999127-7999188)
chr5 (219-273)||(40426634-40426688)
chr5 (238-288)||(42582813-42582863)
chr5 (244-288)||(20982254-20982297)
chr5 (230-270)||(39477844-39477884)
[»] scaffold0012 (1 HSPs)
scaffold0012 (233-303)||(207695-207765)
[»] scaffold0018 (1 HSPs)
scaffold0018 (219-304)||(157979-158064)
[»] scaffold0050 (1 HSPs)
scaffold0050 (219-283)||(58476-58540)


Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 17 - 461
Target Start/End: Complemental strand, 1508981 - 1508537
Alignment:
Q  17 taacatgatcgtcttataacaaataaattaacannnnnnnctttaattccnnnnnnnttgttccccccttcaacaaaactatgtacccgttccaattggc 116  Q
    |||||||||||||||||||||||||||||||||       ||| ||||||       ||||||||||||||||||||||||||| |||||||||||||||    
T  1508981 taacatgatcgtcttataacaaataaattaacatttttttcttcaattccaaaaaaattgttccccccttcaacaaaactatgtgcccgttccaattggc 1508882  T
Q  117 ttatctacactcatctactagcataaacattgtgagactatttgggagaattcacnnnnnnngcttatgacaagttcataacctgttttcatattatcaa 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  1508881 ttatctacactcatctactagcataaacattgtgagactatttgggagaattcacaaaaaaagcttatgacaagttcataacctgttttcatattatcaa 1508782  T
Q  217 gggtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaaga 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1508781 gggtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaaga 1508682  T
Q  317 taaaatattgttaaattatatttgtatatttatagaacatatttttcttcaaaaagctttgctagaggaatgctgtcttacaaagtgcaacaagtgcaca 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1508681 taaaatattgttaaattatatttgtatatttatagaacatatttttcttcaaaaagctttgctagaggaatgctgtcttacaaagtgcaacaagtgcaca 1508582  T
Q  417 tcatacaaaagtaggacaagcagaacattgtaaacatgtagttca 461  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  1508581 tcatacaaaagtaggacaagcagaacattgtaaacatgtagttca 1508537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 219 - 344
Target Start/End: Complemental strand, 30956824 - 30956700
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagata 318  Q
    ||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||  ||||| |||||||| ||||| ||| ||| || |||||||||||    
T  30956824 gtttggataaacagcttatttgcagcttatagcacaagggcttatcatgataagcatttatgcataagcttacataagcta-tttctatagcaaaagata 30956726  T
Q  319 aaatattgttaaattatatttgtata 344  Q
    |||||  |||||||| | ||||||||    
T  30956725 aaataaagttaaattgtttttgtata 30956700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 219 - 344
Target Start/End: Complemental strand, 30972636 - 30972512
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagata 318  Q
    ||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||  ||||| |||||||| ||||| ||| ||| || |||||||||||    
T  30972636 gtttggataaacagcttatttgcagcttatagcacaagggcttatcatgataagcatttatgcataagcttacataagcta-tttctatagcaaaagata 30972538  T
Q  319 aaatattgttaaattatatttgtata 344  Q
    |||||  |||||||| | ||||||||    
T  30972537 aaataaagttaaattgtttttgtata 30972512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 222 - 295
Target Start/End: Complemental strand, 31365467 - 31365394
Alignment:
Q  222 tggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataa 295  Q
    |||| |||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  31365467 tggataaacagcttatttgcagcttatagcacaagtgattatcatgataagcacttatgtataagcttgcataa 31365394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 227 - 345
Target Start/End: Original strand, 20170403 - 20170520
Alignment:
Q  227 aaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattg 326  Q
    ||||| ||||||||||  ||||| ||||| ||||| ||||||||||||||||||||| |||||||| || ||| ||||||  ||||||||||||||| ||    
T  20170403 aaacaacttatttgcagtttatatcacaactgcttttcatgataagcgcttatgtatcagcttgcacaagcta-tttttactgcaaaagataaaataatg 20170501  T
Q  327 ttaaattatatttgtatat 345  Q
    ||||||| | |||||||||    
T  20170502 ttaaattgtttttgtatat 20170520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 219 - 345
Target Start/End: Complemental strand, 35959654 - 35959529
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagata 318  Q
    ||||||| |||||||||||||||| |||||| ||||||  |||||||||||||| |||||||||||||||  ||||| ||| ||| || || ||| ||||    
T  35959654 gtttggataaacagcttatttgcagcttatatcacaagctcttatcatgataagagcttatgtataagctcacataagcta-tttctatagaaaaggata 35959556  T
Q  319 aaatattgttaaattatatttgtatat 345  Q
    |||||  |||||||||| |||||||||    
T  35959555 aaataaagttaaattatttttgtatat 35959529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 219 - 304
Target Start/End: Original strand, 944365 - 944452
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcac-aagtgcttatcatgataagcg-cttatgtataagcttgcataaactattttt 304  Q
    ||||||| ||||| |||||||||| |||||| ||| ||||||||||||||||||||| |||| |||||||||||||||| ||||||||    
T  944365 gtttggataaacaacttatttgcagcttataacactaagtgcttatcatgataagcggcttacgtataagcttgcataagctattttt 944452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 402721 - 402660
Alignment:
Q  227 aaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||| |||||||||| || |||||||||||||||||||||||||| |||||||||||||||    
T  402721 aaacaacttatttgcagctcatagcacaagtgcttatcatgataagggcttatgtataagct 402660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 235 - 323
Target Start/End: Complemental strand, 12862429 - 12862342
Alignment:
Q  235 tatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaata 323  Q
    ||||||||  |||||||| ||| |||||| ||||||||| ||||||| ||||||||||||| ||| |||||| ||||||||||||||||    
T  12862429 tatttgcaggttatagcaaaagcgcttataatgataagcacttatgtttaagcttgcataatcta-tttttatagcaaaagataaaata 12862342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 321
Target Start/End: Original strand, 20880349 - 20880450
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagata 318  Q
    ||||||| | ||| ||||||||||  |||||||||||| | ||||||| ||||| |||||||||||||||| ||||| ||| |||||| |||||| ||||    
T  20880349 gtttggatagacaacttatttgcagtttatagcacaagcggttatcataataagtgcttatgtataagcttacataagcta-tttttatagcaaatgata 20880447  T
Q  319 aaa 321  Q
    |||    
T  20880448 aaa 20880450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 323
Target Start/End: Original strand, 2719349 - 2719444
Alignment:
Q  227 aaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaata 323  Q
    ||||||||||||| || ||||||||||||  |||||||||||||||| |||| | |||||||| || || ||| ||| |||||||||| ||||||||    
T  2719349 aaacagcttatttacagcttatagcacaaacgcttatcatgataagcacttacgcataagcttacacaagcta-tttctaaagcaaaatataaaata 2719444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 295
Target Start/End: Original strand, 19983653 - 19983728
Alignment:
Q  220 tttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataa 295  Q
    |||||| ||||| ||||||||||| |||||||| || || |||| |||||||||| |||||||||||||| |||||    
T  19983653 tttggataaacaacttatttgcaatttatagcataattgtttattatgataagcgtttatgtataagcttacataa 19983728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 286
Target Start/End: Original strand, 23815943 - 23816002
Alignment:
Q  227 aaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataag 286  Q
    |||| ||||||||||| ||||||||  |||||||||||||||||||| ||||||||||||    
T  23815943 aaactgcttatttgcatcttatagccaaagtgcttatcatgataagcacttatgtataag 23816002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 24685006 - 24684918
Alignment:
Q  234 ttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaata 323  Q
    ||||||||| |||||||||||| | || |||||||||||||||| || ||||| || ||||| ||| |||||| || |||||||||||||    
T  24685006 ttatttgcagcttatagcacaaattctcatcatgataagcgcttttgcataagtttacataagcta-tttttatagaaaaagataaaata 24684918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 333
Target Start/End: Complemental strand, 29520658 - 29520564
Alignment:
Q  237 tttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattgttaaatt 333  Q
    |||||| ||||||||| ||   |||||||| |||||| ||||||||||||||||||||| |||  ||||| ||||||||| ||||||  ||||||||    
T  29520658 tttgcagcttatagcataaacacttatcataataagcacttatgtataagcttgcataagcta--ttttatagcaaaagagaaaataacgttaaatt 29520564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 288
Target Start/End: Complemental strand, 34235264 - 34235195
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||||| ||||| |||||||| | ||||||| ||| |||||||||||||||||| |||||||| |||||    
T  34235264 gtttggataaacaacttatttgtagcttatagtacatgtgcttatcatgataagcacttatgtagaagct 34235195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 293
Target Start/End: Original strand, 39980610 - 39980675
Alignment:
Q  228 aacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcat 293  Q
    ||||||||||||||| ||||||| ||||   ||||||||||||||| |||||||||||| ||||||    
T  39980610 aacagcttatttgcagcttataggacaaacacttatcatgataagcacttatgtataagtttgcat 39980675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 333
Target Start/End: Complemental strand, 46778411 - 46778312
Alignment:
Q  233 cttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattgttaaat 332  Q
    |||||||||| ||||||| ||||   ||||||||||||||||||||||||| |||||  |||| ||| ||| || ||||| ||||||||||  |||||||    
T  46778411 cttatttgcaccttatagtacaaacacttatcatgataagcgcttatgtatcagcttatataagcta-tttctatagcaagagataaaataaagttaaat 46778313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 329
Target Start/End: Complemental strand, 28796022 - 28795921
Alignment:
Q  227 aaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattg 326  Q
    ||||| ||||||| || ||||||||||||    |||||||||||| | ||||||||||||||| | |||||||| ||||||||  || ||||||||| ||    
T  28796022 aaacaacttatttacagcttatagcacaaacatttatcatgataaacacttatgtataagcttacctaaactat-ttttaaagggaaggataaaataatg 28795924  T
Q  327 tta 329  Q
    |||    
T  28795923 tta 28795921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 46886885 - 46886835
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgat 269  Q
    ||||||| ||||| |||||||||| ||||||||| ||||||||||||||||    
T  46886885 gtttggataaacaacttatttgcagcttatagcataagtgcttatcatgat 46886835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 237 - 333
Target Start/End: Original strand, 5331184 - 5331278
Alignment:
Q  237 tttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattgttaaatt 333  Q
    |||||| ||||||||| ||   ||||| || |||||| ||||||||||||||||||||| |||  ||||| ||||||||| ||||||  ||||||||    
T  5331184 tttgcagcttatagcataaacacttatgataataagcacttatgtataagcttgcataagcta--ttttatagcaaaagagaaaataacgttaaatt 5331278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 28240216 - 28240277
Alignment:
Q  227 aaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||| ||||| |||| ||||||||||||| ||||||||||||||| |||||| | ||||||    
T  28240216 aaacaacttatctgcagcttatagcacaagcgcttatcatgataagtgcttatatttaagct 28240277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 288
Target Start/End: Original strand, 31403240 - 31403309
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||||| |||||| |||||||||  || |||| |||||||||||||| |||||| ||||| ||||||||    
T  31403240 gtttggataaacaggttatttgcagtttctagcccaagtgcttatcatcataagcacttatatataagct 31403309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 53789645 - 53789576
Alignment:
Q  233 cttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattt 302  Q
    |||| ||||| |||||  |||||| |||||||||||||||| ||||||| ||||||| ||||| ||||||    
T  53789645 cttaattgcagcttatgccacaagcgcttatcatgataagcacttatgtgtaagcttacataagctattt 53789576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 20003482 - 20003430
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataa 271  Q
    ||||||| ||||| |||||||| | |||||||||| |||||||||||||||||    
T  20003482 gtttggagaaacaacttatttgtagcttatagcacgagtgcttatcatgataa 20003430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 255
Target Start/End: Complemental strand, 42747949 - 42747913
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaa 255  Q
    ||||||| |||||||||||||||||||||||||||||    
T  42747949 gtttggataaacagcttatttgcaacttatagcacaa 42747913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 295
Target Start/End: Original strand, 30443661 - 30443712
Alignment:
Q  244 cttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataa 295  Q
    ||||||||||||||||||||||||||||||  ||||| || ||||| |||||    
T  30443661 cttatagcacaagtgcttatcatgataagcaattatgcatgagcttacataa 30443712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 35328350 - 35328288
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgta 282  Q
    ||||||| ||| |||||||||||| ||||||| ||||| |||||| ||||||||| ||||||||    
T  35328350 gtttggataaatagcttatttgcagcttatag-acaagcgcttattatgataagcacttatgta 35328288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 302
Target Start/End: Complemental strand, 36631221 - 36631166
Alignment:
Q  247 atagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattt 302  Q
    |||||||||||||||||||||||||||  |||||||||| || || ||| ||||||    
T  36631221 atagcacaagtgcttatcatgataagcaattatgtataaactcgcttaagctattt 36631166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 278
Target Start/End: Original strand, 38901968 - 38902027
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgctta 278  Q
    ||||||| ||||||||||||||||||||||||||| |  |||||||| | |||| |||||    
T  38901968 gtttggataaacagcttatttgcaacttatagcacgatcgcttatcaggttaagtgctta 38902027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 278
Target Start/End: Original strand, 47132249 - 47132308
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgctta 278  Q
    ||||||| ||||| ||||||| || |||||||||||||  ||||||||||||||| ||||    
T  47132249 gtttggataaacaacttattttcaccttatagcacaagcacttatcatgataagcactta 47132308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 287
Target Start/End: Complemental strand, 7814319 - 7814265
Alignment:
Q  233 cttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagc 287  Q
    |||||||||| ||||||| | ||||||||||||| |||||| ||||| |||||||    
T  7814319 cttatttgcagcttatagtataagtgcttatcataataagcacttatttataagc 7814265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 287
Target Start/End: Original strand, 12833880 - 12833934
Alignment:
Q  233 cttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagc 287  Q
    ||||| |||| ||||||||| ||||||||||||| |||||| ||||| |||||||    
T  12833880 cttatatgcagcttatagcataagtgcttatcataataagcacttatttataagc 12833934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 288
Target Start/End: Complemental strand, 47249653 - 47249587
Alignment:
Q  222 tggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    |||| ||| |||||||||||| |||||| ||||||  |||||||||||||  ||| |||||||||||    
T  47249653 tggataaatagcttatttgcagcttataacacaagcacttatcatgataaatgctcatgtataagct 47249587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 304
Target Start/End: Original strand, 901770 - 901838
Alignment:
Q  231 agcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttt 304  Q
    |||||||||||| |||| | |||||| |||||||||||     ||||||||||||||||||||||  |||||||    
T  901770 agcttatttgcagcttacaacacaagcgcttatcatga-----gcttatgtataagcttgcataagttattttt 901838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 345
Target Start/End: Original strand, 4400943 - 4401044
Alignment:
Q  244 cttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattgttaaattatatttgtat 343  Q
    ||||||||||||   ||||| || |||||  |||||||||||| |||||||| || ||||||| | |||||| | |||||  |||||||||| || ||||    
T  4400943 cttatagcacaaacacttattattataagtacttatgtataagtttgcataagcttttttttataccaaaaggtgaaataacgttaaattattttcgtat 4401042  T
Q  344 at 345  Q
    ||    
T  4401043 at 4401044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 333
Target Start/End: Complemental strand, 29520470 - 29520416
Alignment:
Q  277 tatgtataagcttgcataaactattttttaaagcaaaagataaaatattgttaaatt 333  Q
    ||||||||||||||||||| ||||||||  ||||||||||||| |||  ||||||||    
T  29520470 tatgtataagcttgcataagctattttt--aagcaaaagataacataacgttaaatt 29520416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 280
Target Start/End: Original strand, 34034043 - 34034104
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatg 280  Q
    ||||||| ||||| ||||||| || ||||||| ||| | |||||||||||||||| ||||||    
T  34034043 gtttggataaacaacttattttcagcttatagaacaggcgcttatcatgataagcacttatg 34034104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 273
Target Start/End: Original strand, 39442321 - 39442374
Alignment:
Q  220 tttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagc 273  Q
    |||||| |||||||||||||||| ||||| ||  |||||||||| |||||||||    
T  39442321 tttggataaacagcttatttgcagcttatggcttaagtgcttattatgataagc 39442374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 295
Target Start/End: Complemental strand, 139831 - 139795
Alignment:
Q  259 cttatcatgataagcgcttatgtataagcttgcataa 295  Q
    |||||||||||||||||||||| |||||||| |||||    
T  139831 cttatcatgataagcgcttatgcataagcttacataa 139795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 21335561 - 21335597
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaa 255  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  21335561 gtttggataaacagcttatttgcaacttatatcacaa 21335597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 288
Target Start/End: Complemental strand, 30574059 - 30574031
Alignment:
Q  260 ttatcatgataagcgcttatgtataagct 288  Q
    |||||||||||||||||||||||||||||    
T  30574059 ttatcatgataagcgcttatgtataagct 30574031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 219 - 318
Target Start/End: Complemental strand, 21568826 - 21568728
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagata 318  Q
    ||||||| ||||||||| |||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||||||||||    
T  21568826 gtttggataaacagcttgtttgcagcttatagcataagtgcttatcatgataagcacttatgtataagcttgcataagcta-tttttatagcaaaagata 21568728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 219 - 345
Target Start/End: Original strand, 46078019 - 46078144
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagata 318  Q
    ||||||| ||||||||||| ||||||||| |||||||   | ||||||||||||||||||||||||||||| |||||  || |||||| || ||||||||    
T  46078019 gtttggacaaacagcttatatgcaacttaaagcacaaacacatatcatgataagcgcttatgtataagcttacataagtta-tttttatagaaaaagata 46078117  T
Q  319 aaatattgttaaattatatttgtatat 345  Q
    ||| |  |||||||| | |||||||||    
T  46078118 aaacaaagttaaattgtttttgtatat 46078144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 219 - 323
Target Start/End: Complemental strand, 23989682 - 23989579
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagata 318  Q
    |||||||  |||| |||||||||| ||||||| ||| | |||||||||||||||  |||||||||||| ||||||||||||| ||||| || ||||||||    
T  23989682 gtttggagtaacaacttatttgcagcttatagtacacgcgcttatcatgataagttcttatgtataagtttgcataaactat-ttttatagtaaaagata 23989584  T
Q  319 aaata 323  Q
    |||||    
T  23989583 aaata 23989579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 219 - 279
Target Start/End: Original strand, 33678664 - 33678724
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttat 279  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  33678664 gtttggacaaacagcttatttgcatcttatagcacaagtgcttatcatgataagagcttat 33678724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 333
Target Start/End: Original strand, 9210500 - 9210613
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagata 318  Q
    ||||||| |||||||||||||||| |||||||| |||    |||||||||||| ||||||||||||||||||||||| |||  ||||| || |||| |||    
T  9210500 gtttggataaacagcttatttgcagcttatagcgcaaacatttatcatgataatcgcttatgtataagcttgcataagcta-cttttatagaaaaaaata 9210598  T
Q  319 aaatattgttaaatt 333  Q
    ||||  |||||||||    
T  9210599 aaatgatgttaaatt 9210613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 38500108 - 38500051
Alignment:
Q  227 aaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtata 284  Q
    ||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||    
T  38500108 aaacagcttatttgcagtttatagcacaagcgcttatcatgataagcgcttatgtata 38500051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 220 - 323
Target Start/End: Complemental strand, 4970985 - 4970883
Alignment:
Q  220 tttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataa 319  Q
    |||||| |||| ||||||||||| ||||||| | |||| | || ||||||||||| |||||||||||||| ||||| ||| ||| || ||||||||||||    
T  4970985 tttggataaacggcttatttgcagcttatagaaaaagtccctaccatgataagcggttatgtataagcttacataagcta-tttctatagcaaaagataa 4970887  T
Q  320 aata 323  Q
    ||||    
T  4970886 aata 4970883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 219 - 345
Target Start/End: Original strand, 45263965 - 45264092
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaacta-ttttttaaagcaaaagat 317  Q
    ||||||| ||||| |||||||||  |||||  |||||| ||||||||||| ||||||||| | |||||||| ||||| ||| ||||||| || |||||||    
T  45263965 gtttggataaacaacttatttgcggcttatcacacaagcgcttatcatgaaaagcgcttacgcataagcttacataagctatttttttatagaaaaagat 45264064  T
Q  318 aaaatattgttaaattatatttgtatat 345  Q
     |||||  |||||||| | |||||||||    
T  45264065 gaaataaagttaaattgtttttgtatat 45264092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 295
Target Start/End: Complemental strand, 3308442 - 3308374
Alignment:
Q  227 aaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataa 295  Q
    |||||||||||||| | |||||||||||||| ||| |||||||||| ||||||||||||| || |||||    
T  3308442 aaacagcttatttggagcttatagcacaagtacttttcatgataagtgcttatgtataaggttacataa 3308374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 237 - 333
Target Start/End: Complemental strand, 45806657 - 45806562
Alignment:
Q  237 tttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattgttaaatt 333  Q
    |||||| ||||||||| |||  |||||||| |||||| ||||||||||||||||||||| ||| | |||| ||||||||| ||||||  ||||||||    
T  45806657 tttgcagcttatagcaaaagcacttatcataataagcacttatgtataagcttgcataagcta-tgtttatagcaaaagagaaaataacgttaaatt 45806562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 288
Target Start/End: Complemental strand, 33553007 - 33552940
Alignment:
Q  221 ttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||| ||||| |||||||||| ||||| |||||||  |||| |||||||||||||||||||||||||    
T  33553007 ttggataaacaacttatttgcagcttattgcacaagcacttaccatgataagcgcttatgtataagct 33552940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 289
Target Start/End: Original strand, 33128629 - 33128699
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagctt 289  Q
    ||||||| |||||||||||||||| |||| |||||||   |||||||||||||| ||||||| ||||||||    
T  33128629 gtttggataaacagcttatttgcagcttacagcacaaacacttatcatgataagtgcttatgcataagctt 33128699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 33672975 - 33673029
Alignment:
Q  234 ttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||||||| ||||||||||||||  |||| ||||||||||||||||||||||||    
T  33672975 ttatttgcagcttatagcacaagtatttattatgataagcgcttatgtataagct 33673029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 319
Target Start/End: Original strand, 40196249 - 40196345
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagata 318  Q
    ||||||| ||||| |||||||| |  ||| |||||| | |||||||||||||||||||||  |||||||||||||||  ||||||||  |||||||||||    
T  40196249 gtttggataaacaacttatttgtagtttacagcacatgcgcttatcatgataagcgctta--tataagcttgcataatgtatttttt--agcaaaagata 40196344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 47795847 - 47795905
Alignment:
Q  227 aaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataa 285  Q
    |||||||||||||||| ||||||||| ||| |||||||||||||| | |||||||||||    
T  47795847 aaacagcttatttgcagcttatagcataagcgcttatcatgataaccacttatgtataa 47795905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 304
Target Start/End: Complemental strand, 38138677 - 38138592
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttt 304  Q
    ||||||| |||||||||||||||  ||||||||||||   ||| |||||||||| | ||||||||||| ||| |||| ||||||||    
T  38138677 gtttggataaacagcttatttgcgtcttatagcacaatcacttgtcatgataagagtttatgtataaggttggataagctattttt 38138592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 295
Target Start/End: Complemental strand, 18865248 - 18865172
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataa 295  Q
    ||||||| ||||| |||||||||| ||||||||||||  ||||||||||||||| | |||| |||||| || |||||    
T  18865248 gtttggataaacaacttatttgcagcttatagcacaaacgcttatcatgataagtgtttatttataagtttacataa 18865172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 27863895 - 27863843
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataa 271  Q
    ||||||| ||||| |||||||| | ||||||||||||||||||||||||||||    
T  27863895 gtttggataaacaacttatttgtagcttatagcacaagtgcttatcatgataa 27863843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 345
Target Start/End: Original strand, 420283 - 420357
Alignment:
Q  270 aagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattgttaaattatatttgtatat 345  Q
    ||||| |||||||||||||||||||| ||| | |||| |||||||||||||||| |||| |||| | |||||||||    
T  420283 aagcgtttatgtataagcttgcataagcta-tgtttatagcaaaagataaaataatgttcaattgtttttgtatat 420357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 5947033 - 5947113
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactatttt 303  Q
    ||||||| ||| |||||||||| | ||||||||||||    ||||||||||| || |||||||||||||||  ||||||||||||    
T  5947033 gtttggataaatagcttatttgaagcttatagcacaa----ttatcatgataggcacttatgtataagcttagataaactatttt 5947113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 302
Target Start/End: Complemental strand, 46280457 - 46280374
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattt 302  Q
    ||||||| |||||| ||||||  | ||||||||||||| | |||||||||||||| || ||| |||||||| ||||| ||||||    
T  46280457 gtttggataaacagtttatttatagcttatagcacaagcgtttatcatgataagcactcatgcataagcttacataatctattt 46280374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 323
Target Start/End: Original strand, 48140137 - 48140191
Alignment:
Q  268 ataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaata 323  Q
    |||||||||||||||||||||||||||| ||| |||||| | ||||||||||||||    
T  48140137 ataagcgcttatgtataagcttgcataagcta-tttttataacaaaagataaaata 48140191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 273
Target Start/End: Original strand, 17248437 - 17248483
Alignment:
Q  227 aaacagcttatttgcaacttatagcacaagtgcttatcatgataagc 273  Q
    ||||| ||||||| ||||||||||||||||| |||||||||||||||    
T  17248437 aaacaccttatttacaacttatagcacaagttcttatcatgataagc 17248483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 286
Target Start/End: Complemental strand, 20526707 - 20526641
Alignment:
Q  220 tttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataag 286  Q
    |||||| |||||  ||||||||| |||||||||||| ||||||| ||||| ||| ||||||||||||    
T  20526707 tttggataaacacattatttgcaccttatagcacaaatgcttataatgattagctcttatgtataag 20526641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 345
Target Start/End: Original strand, 45004638 - 45004763
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagata 318  Q
    ||||||| ||| | ||||||||||  ||||||||||||   |||| ||||||| ||  |   |||| ||||||||||||||||||| | |||||||||||    
T  45004638 gtttggataaataacttatttgcagtttatagcacaagcaattattatgataaacgtgtgcctatatgcttgcataaactattttt-atagcaaaagata 45004736  T
Q  319 aaatattgttaaattatatttgtatat 345  Q
    |||||  |||||||| |||||| ||||    
T  45004737 aaataaagttaaattgtatttgcatat 45004763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 274 - 342
Target Start/End: Original strand, 20258437 - 20258506
Alignment:
Q  274 gcttatgtataagcttgcataaactat-tttttaaagcaaaagataaaatattgttaaattatatttgta 342  Q
    ||||||||| | |||||||||| |||| |||||| |||||||||||||||| ||||||||| | ||||||    
T  20258437 gcttatgtacatgcttgcataagctatatttttatagcaaaagataaaataatgttaaattgtttttgta 20258506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 345
Target Start/End: Original strand, 28900760 - 28900885
Alignment:
Q  220 tttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataa 319  Q
    |||||| ||||| |||||||||| |||||| ||||||   |||| ||||||||||||||||| ||| |   |||| | |||||||   | |||| |||||    
T  28900760 tttggataaacaacttatttgcagcttataacacaagcatttattatgataagcgcttatgtctaatcggacatatattatttttattatcaaatgataa 28900859  T
Q  320 aatattgttaaattatatttgtatat 345  Q
    ||||  |||||||||| |||||||||    
T  28900860 aataaagttaaattatctttgtatat 28900885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 288
Target Start/End: Complemental strand, 39393763 - 39393695
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    |||||||  ||||||||||||||| |||||||||||||   | |||||||||||||||||| ||||||||    
T  39393763 gtttggatgaacagcttatttgcagcttatagcacaagctttgatcatgataagcgcttat-tataagct 39393695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 8704509 - 8704557
Alignment:
Q  260 ttatcatgataagcgcttatgtataagcttgcataaactattttttaaa 308  Q
    |||||||||||||||||||||||||||||||| ||  ||| ||||||||    
T  8704509 ttatcatgataagcgcttatgtataagcttgcctatgctaatttttaaa 8704557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 342
Target Start/End: Original strand, 20234402 - 20234477
Alignment:
Q  268 ataagcgcttatgtataagcttgcataaactat-tttttaaagcaaaagataaaatattgttaaattatatttgta 342  Q
    ||||| |||||||||||||| ||||||| |||  |||||| |||||||||||||||||  ||||||| | ||||||    
T  20234402 ataagtgcttatgtataagcatgcataagctaaatttttatagcaaaagataaaatataattaaattgtttttgta 20234477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 284
Target Start/End: Original strand, 19131242 - 19131307
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtata 284  Q
    ||||||| ||||||||| |||| | |||||||||||||   |||| |||||||||| |||||||||    
T  19131242 gtttggataaacagcttgtttgaagcttatagcacaagcaattattatgataagcgtttatgtata 19131307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 21619297 - 21619358
Alignment:
Q  227 aaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||| || ||||||| |||||||||||||  ||||||||||||||| ||||| | ||||||    
T  21619297 aaacatctaatttgcagcttatagcacaagcacttatcatgataagcacttatctctaagct 21619358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 46139832 - 46139893
Alignment:
Q  227 aaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||| |||||||||| |||||| ||||||  |||||||||||||| | |||| ||||||||    
T  46139832 aaacaacttatttgcagcttataacacaagcacttatcatgataagtgattatctataagct 46139893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 7612358 - 7612410
Alignment:
Q  236 atttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||||| ||||||||| |||  ||||||||||||||| | ||||||||||||    
T  7612358 atttgcagcttatagcataagcacttatcatgataagctcatatgtataagct 7612410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 295
Target Start/End: Original strand, 20428351 - 20428415
Alignment:
Q  231 agcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataa 295  Q
    |||||| ||| | ||||||||||||   ||| |||||||||||||||||||||||| || |||||    
T  20428351 agcttagttggagcttatagcacaaacacttctcatgataagcgcttatgtataaggttacataa 20428415  T

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Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 20881815 - 20881755
Alignment:
Q  228 aacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    |||| |||||||| |  ||||||||||||  ||||||||||||||| ||||||||| ||||    
T  20881815 aacaacttatttgtagtttatagcacaagcacttatcatgataagctcttatgtatgagct 20881755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 22283904 - 22283860
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttat 263  Q
    ||||||| ||||| ||||| |||||||||||||||||| ||||||    
T  22283904 gtttggataaacaacttatgtgcaacttatagcacaagggcttat 22283860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 288
Target Start/End: Original strand, 32714345 - 32714373
Alignment:
Q  260 ttatcatgataagcgcttatgtataagct 288  Q
    |||||||||||||||||||||||||||||    
T  32714345 ttatcatgataagcgcttatgtataagct 32714373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 45806462 - 45806411
Alignment:
Q  281 tataagcttgcataaactattttttaaagcaaaagataaaatattgttaaatt 333  Q
    ||||||||||||||| |||||||| | ||||||||||||||||  ||||||||    
T  45806462 tataagcttgcataagctattttt-atagcaaaagataaaataacgttaaatt 45806411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 219 - 333
Target Start/End: Original strand, 43505830 - 43505941
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagata 318  Q
    ||||||| ||||| |||||||||||||||||||||||  ||  |||||||||||| ||||||||||||||||||||| ||| |||||| |||||||||||    
T  43505830 gtttggataaacaacttatttgcaacttatagcacaaacgc--atcatgataagcacttatgtataagcttgcataagcta-tttttatagcaaaagata 43505926  T
Q  319 aaatattgttaaatt 333  Q
    |||||  ||||||||    
T  43505927 aaataacgttaaatt 43505941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 219 - 345
Target Start/End: Complemental strand, 50681287 - 50681162
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagata 318  Q
    ||||||| ||||| |||||||  | |||||||||||||  |||||||||||||||| |||||||||||||| || || ||| |||||| || | ||||||    
T  50681287 gtttggataaacaacttatttatagcttatagcacaagaacttatcatgataagcgtttatgtataagcttacaaaagcta-tttttataggataagata 50681189  T
Q  319 aaatattgttaaattatatttgtatat 345  Q
    ||||| ||||||||| | |||||||||    
T  50681188 aaataatgttaaattgtttttgtatat 50681162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 244 - 345
Target Start/End: Original strand, 41336658 - 41336757
Alignment:
Q  244 cttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattgttaaattatatttgtat 343  Q
    |||||||||||||| ||||| ||||||||| |||||||||| |||||||||| ||| |||||| ||| ||||||||||||  |||||||| | |||||||    
T  41336658 cttatagcacaagttcttattatgataagcacttatgtataggcttgcataagcta-tttttatagc-aaagataaaataaagttaaattgtttttgtat 41336755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 288
Target Start/End: Complemental strand, 50662920 - 50662851
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||||| ||||| |||||||||| |||||| |||||| |||||||||||| |||| |||||||||||||    
T  50662920 gtttggataaacaacttatttgcagcttatatcacaagagcttatcatgatgagcgtttatgtataagct 50662851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 15173486 - 15173422
Alignment:
Q  231 agcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataa 295  Q
    ||||||||| || ||| ||||||||  |||||||||||||||||| |||||||||||||||||||    
T  15173486 agcttattttcagcttgtagcacaaacgcttatcatgataagcgcatatgtataagcttgcataa 15173422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 35572006 - 35571951
Alignment:
Q  233 cttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    |||||||||| ||||||||||||||| ||||||||| |||| ||||||||||||||    
T  35572006 cttatttgcagcttatagcacaagtggttatcatgacaagcacttatgtataagct 35571951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 304
Target Start/End: Original strand, 24169141 - 24169218
Alignment:
Q  227 aaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttt 304  Q
    |||||||||| ||||| |||||| ||| ||  ||||||||||| ||||||||||||| ||||| ||||| ||||||||    
T  24169141 aaacagcttacttgcagcttatatcaccagcacttatcatgattagcgcttatgtatgagcttacataagctattttt 24169218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 333
Target Start/End: Complemental strand, 25904412 - 25904295
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagc----gcttatgtataagcttgcataaactattttttaaagcaaaa 314  Q
    ||||||| ||||| || |||||||  ||||||||||||  |||||||||||||||    | |||| ||||||||| ||||| ||| |||||| |||||||    
T  25904412 gtttggataaacaactcatttgcagattatagcacaagcacttatcatgataagcatgtgattatatataagcttacataagcta-tttttacagcaaaa 25904314  T
Q  315 gataaaatattgttaaatt 333  Q
    |||||||||  ||||||||    
T  25904313 gataaaataaagttaaatt 25904295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 288
Target Start/End: Complemental strand, 44863150 - 44863081
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||||| ||||| |||||||||| |||||||||||||  ||| |||||||||| ||||||| |||||||    
T  44863150 gtttggataaacaacttatttgcagcttatagcacaagcacttgtcatgataagtgcttatgcataagct 44863081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 27081 - 27025
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgc 275  Q
    ||||||| ||||| ||| |||||| ||||||||||||| ||||||||||||||||||    
T  27081 gtttggataaacatcttgtttgcagcttatagcacaagcgcttatcatgataagcgc 27025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 55084645 - 55084593
Alignment:
Q  236 atttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||| ||||||||||| ||||| ||||||||||||||||||||| |||||||    
T  55084645 atttgaaacttatagcataagtgattatcatgataagcgcttatgcataagct 55084593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 270 - 345
Target Start/End: Complemental strand, 54069564 - 54069490
Alignment:
Q  270 aagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattgttaaattatatttgtatat 345  Q
    |||| ||||||||||||||||||||  |||||||| | | |||||||||||||| ||||||||| | |||||||||    
T  54069564 aagcacttatgtataagcttgcatatgctattttt-atatcaaaagataaaataatgttaaattgtttttgtatat 54069490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 11389408 - 11389474
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataa 285  Q
    ||||||| ||||| ||||||||||  ||||| ||  |||||||||||||||||| ||||||||||||    
T  11389408 gtttggataaacaacttatttgcagtttatatcatgagtgcttatcatgataagtgcttatgtataa 11389474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 260 - 333
Target Start/End: Complemental strand, 15177359 - 15177287
Alignment:
Q  260 ttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattgttaaatt 333  Q
    |||||||||||||| | ||||||||||||||||||| ||| |||| | ||| ||||||||||||  ||||||||    
T  15177359 ttatcatgataagcacgtatgtataagcttgcataagcta-ttttaatagctaaagataaaataacgttaaatt 15177287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 274 - 323
Target Start/End: Complemental strand, 31076529 - 31076481
Alignment:
Q  274 gcttatgtataagcttgcataaactattttttaaagcaaaagataaaata 323  Q
    |||||||||||||||||||||| ||| |||||| ||||||||||||||||    
T  31076529 gcttatgtataagcttgcataagcta-tttttagagcaaaagataaaata 31076481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 44797764 - 44797817
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataag 272  Q
    ||||||| ||||| |||||||||||||||||||||||| | |||||||| ||||    
T  44797764 gtttggataaacaacttatttgcaacttatagcacaagcgattatcatggtaag 44797817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 3155486 - 3155554
Alignment:
Q  220 tttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    |||||| ||||| ||||| |||| ||||||| ||||| ||||||||||||||||   ||||||||||||    
T  3155486 tttggataaacaacttatctgcagcttatagtacaagcgcttatcatgataagcatgtatgtataagct 3155554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 21731816 - 21731772
Alignment:
Q  244 cttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||||||||||| ||||||||||||||| ||||| |||||||||    
T  21731816 cttatagcacaagcgcttatcatgataagtgcttacgtataagct 21731772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 302
Target Start/End: Original strand, 22030115 - 22030159
Alignment:
Q  258 gcttatcatgataagcgcttatgtataagcttgcataaactattt 302  Q
    |||||||||||||||||||||||||||||||  ||||| ||||||    
T  22030115 gcttatcatgataagcgcttatgtataagctcacataagctattt 22030159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 333
Target Start/End: Original strand, 31851343 - 31851439
Alignment:
Q  234 ttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattgttaaatt 333  Q
    ||||||||| |||||  |||||||||||||||||||||||  ||||||| |||||  ||||| ||| |||||| | |||| |||||||||  ||||||||    
T  31851343 ttatttgcagcttat--cacaagtgcttatcatgataagcatttatgtagaagctcacataagcta-tttttataacaaatgataaaataaagttaaatt 31851439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 295
Target Start/End: Complemental strand, 40831211 - 40831157
Alignment:
Q  244 cttatagcacaagtgcttatcatgataa---gcgcttatgtataagcttgcataa 295  Q
    ||||||||||||| ||||||||||||||   ||||||||| ||||||||||||||    
T  40831211 cttatagcacaagcgcttatcatgataataagcgcttatgaataagcttgcataa 40831157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 44138442 - 44138510
Alignment:
Q  220 tttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    |||||| |||||||||||||||| ||| ||| |||||  ||||||||||||   |||||||||||||||    
T  44138442 tttggataaacagcttatttgcagcttttagtacaagcacttatcatgatacttgcttatgtataagct 44138510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 321
Target Start/End: Complemental strand, 33587101 - 33587051
Alignment:
Q  270 aagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaa 321  Q
    |||||||||||||||||||||||||| ||| |||||| ||| ||||||||||    
T  33587101 aagcgcttatgtataagcttgcataagcta-tttttatagcgaaagataaaa 33587051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 266
Target Start/End: Complemental strand, 47119133 - 47119086
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcat 266  Q
    ||||||| ||||| ||||||||||||||||||||||||  ||||||||    
T  47119133 gtttggataaacaacttatttgcaacttatagcacaagcacttatcat 47119086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 287
Target Start/End: Complemental strand, 49004141 - 49004090
Alignment:
Q  236 atttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagc 287  Q
    |||||||  |||||||||| | |||||| |||||||||||||||||||||||    
T  49004141 atttgcagattatagcacatgcgcttataatgataagcgcttatgtataagc 49004090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 333
Target Start/End: Original strand, 403423 - 403512
Alignment:
Q  244 cttatagcacaagtgcttat-catgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattgttaaatt 333  Q
    |||||| || |||||||||| |||||||| ||||||| ||||||||||| |||  ||  ||||| ||||||||||||||||  ||||||||    
T  403423 cttatatcagaagtgcttattcatgataaacgcttatctataagcttgcgtaagtta-cttttatagcaaaagataaaataacgttaaatt 403512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 285
Target Start/End: Original strand, 679136 - 679202
Alignment:
Q  220 tttggaaaaacagctta-tttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataa 285  Q
    |||||| ||||| |||| |||| | |||||| |||| |||||||| |||||||||||||||||||||    
T  679136 tttggataaacaacttaatttgtagcttataacacatgtgcttataatgataagcgcttatgtataa 679202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 287
Target Start/End: Complemental strand, 1242455 - 1242401
Alignment:
Q  233 cttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagc 287  Q
    |||||||||| ||||||| | ||||||||||||| |||||| ||||| |||||||    
T  1242455 cttatttgcagcttatagtataagtgcttatcataataagcacttatttataagc 1242401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 304
Target Start/End: Original strand, 18814979 - 18815048
Alignment:
Q  234 ttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttt 304  Q
    ||||||||| ||||| ||||||||||||||||| |||||| ||| || |||||||| ||||| || |||||    
T  18814979 ttatttgcagcttatggcacaagtgcttatcat-ataagcacttttgcataagcttacataagctgttttt 18815048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 345
Target Start/End: Original strand, 19494794 - 19494911
Alignment:
Q  227 aaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattg 326  Q
    ||||| |||||| | | |||||||||||||| ||| ||||||||||| | |||||||||| || ||||| |||  || || |||||| |||||||||  |    
T  19494794 aaacatcttattcggagcttatagcacaagtacttttcatgataagcacctatgtataaggttacataagcta-gttctatagcaaatgataaaataaag 19494892  T
Q  327 ttaaattatatttgtatat 345  Q
     |||||| | |||||||||    
T  19494893 ctaaattgtttttgtatat 19494911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 30377863 - 30377813
Alignment:
Q  236 atttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataag 286  Q
    ||||||| |||||||||||| || |||||||||||||| ||| ||||||||    
T  30377863 atttgcagcttatagcacaaatgtttatcatgataagcacttgtgtataag 30377813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 285
Target Start/End: Complemental strand, 4306338 - 4306281
Alignment:
Q  228 aacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataa 285  Q
    ||||||||||||| || |||| |||||| || | |||||||||||||||||| |||||    
T  4306338 aacagcttatttgaaaattatggcacaattgttaatcatgataagcgcttatatataa 4306281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 7839556 - 7839490
Alignment:
Q  227 aaacagcttatttgcaactta----tagcacaagtgcttatcatgataagcgcttatgtataagctt 289  Q
    ||||| ||||||| |||||||    ||||||||||||||| ||||||||| | ||||||||||||||    
T  7839556 aaacaacttatttacaacttatagctagcacaagtgcttaccatgataagtgattatgtataagctt 7839490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 166
Target Start/End: Original strand, 49939875 - 49939932
Alignment:
Q  109 caattggcttatctacactcatctactagcataaacattgtgagactatttgggagaa 166  Q
    |||||||||||| ||  || |||||||||||||| | |||||||||||||||| ||||    
T  49939875 caattggcttatttaagcttatctactagcataagctttgtgagactatttggaagaa 49939932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 2987088 - 2987140
Alignment:
Q  236 atttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||||| |||||| || ||||| |||||||||||||| ||||| ||||||||    
T  2987088 atttgcagcttataacataagtgtttatcatgataagcacttatttataagct 2987140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 22539234 - 22539166
Alignment:
Q  220 tttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    |||||| ||| | ||||||||||  |||||||| |||  |||||||||| ||||| |||||||||||||    
T  22539234 tttggataaataacttatttgcaggttatagcataagcccttatcatgacaagcgtttatgtataagct 22539166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 23277320 - 23277364
Alignment:
Q  244 cttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    |||||||||||||  ||||| |||||||| |||||||||||||||    
T  23277320 cttatagcacaagcacttataatgataagagcttatgtataagct 23277364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 342
Target Start/End: Complemental strand, 42404145 - 42404074
Alignment:
Q  270 aagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattgttaaattatatttgta 342  Q
    |||| |||||||||||| |||||||  || ||||| | |||||||||||||||| ||||||||| | ||||||    
T  42404145 aagcacttatgtataagtttgcatacgctcttttt-atagcaaaagataaaataatgttaaattgtttttgta 42404074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 227 - 333
Target Start/End: Original strand, 32592467 - 32592572
Alignment:
Q  227 aaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattg 326  Q
    ||||| |||||||| | ||||||||||||   |||||||| |||||||||||||||||||||||||||||||| |||||| || ||||||||||||| ||    
T  32592467 aaacaacttatttgtagcttatagcacaaacacttatcattataagcgcttatgtataagcttgcataaacta-tttttatagaaaaagataaaataatg 32592565  T
Q  327 ttaaatt 333  Q
    |||||||    
T  32592566 ttaaatt 32592572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 219 - 343
Target Start/End: Original strand, 15305528 - 15305652
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttat-catgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagat 317  Q
    ||||||| |||||||||||||||||||| ||||| ||| | |||| |||| |||| |||| ||||||||||||||||| |||||||| | |||||| |||    
T  15305528 gtttggataaacagcttatttgcaacttttagcataagcgtttatacatggtaagtgcttgtgtataagcttgcataagctattttt-atagcaaatgat 15305626  T
Q  318 aaaatattgttaaattatatttgtat 343  Q
    |||||| ||||||||||| |||||||    
T  15305627 aaaataatgttaaattatttttgtat 15305652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 219 - 333
Target Start/End: Complemental strand, 39659706 - 39659594
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagata 318  Q
    ||||||| ||||| |||||||||| |||| ||||||| |||||||||||||||||||||||||||||| ||| ||| |||||||| |||  |||||||||    
T  39659706 gtttggataaacaacttatttgcagcttagagcacaaatgcttatcatgataagcgcttatgtataagtttggatacactattttataa--caaaagata 39659609  T
Q  319 aaatattgttaaatt 333  Q
     ||||  ||||||||    
T  39659608 caataacgttaaatt 39659594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 219 - 302
Target Start/End: Original strand, 41407173 - 41407256
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattt 302  Q
    ||||||| ||||||||| |||||| ||||||||||||| |||||||||||||||| ||||||||||||||| ||||| ||||||    
T  41407173 gtttggataaacagcttgtttgcagcttatagcacaagcgcttatcatgataagcacttatgtataagcttacataagctattt 41407256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 333
Target Start/End: Original strand, 26201925 - 26202014
Alignment:
Q  244 cttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaa-agataaaatattgttaaatt 333  Q
    ||||||||||||| |||||||||||||||| ||||| ||||||||||||||| ||| |||||| |||||| ||||||||||  ||||||||    
T  26201925 cttatagcacaagcgcttatcatgataagcccttatatataagcttgcataagcta-tttttatagcaaagagataaaataacgttaaatt 26202014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 219 - 288
Target Start/End: Complemental strand, 40682561 - 40682492
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||||| ||||| ||||||||||||| ||||| |||| |||||||||| ||||||||||||||||||||    
T  40682561 gtttggataaacatcttatttgcaactcatagcgcaagcgcttatcatggtaagcgcttatgtataagct 40682492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 241 - 346
Target Start/End: Complemental strand, 42868637 - 42868533
Alignment:
Q  241 caacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattgttaaattatatttg 340  Q
    |||||||||||||||| ||||||||||||| ||||||||| ||||| || ||||| ||| |||| | || |||||||||||||  |||||||| | ||||    
T  42868637 caacttatagcacaagcgcttatcatgataggcgcttatgcataagtttacataagcta-ttttcatagaaaaagataaaataaagttaaattgtttttg 42868539  T
Q  341 tatatt 346  Q
    ||||||    
T  42868538 tatatt 42868533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 219 - 294
Target Start/End: Complemental strand, 1633744 - 1633669
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcata 294  Q
    ||||||| |||||||||||||||| ||||||||| |||||||||||||||||||  ||||||| | ||||| ||||    
T  1633744 gtttggataaacagcttatttgcagcttatagcagaagtgcttatcatgataagatcttatgtttgagcttacata 1633669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 12795664 - 12795748
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactatttt 303  Q
    ||||||| |||||| |||||||||  |||||||| |||||||||||||||||||| ||| |  |||||||| ||||| |||||||    
T  12795664 gtttggataaacagtttatttgcagtttatagcataagtgcttatcatgataagcactttttcataagcttacataagctatttt 12795748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 304
Target Start/End: Complemental strand, 33319994 - 33319926
Alignment:
Q  236 atttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttt 304  Q
    ||||||| ||||||||||||| ||||||| |||||| |||||||||| ||| || ||||||||||||||    
T  33319994 atttgcagcttatagcacaagcgcttatcctgataatcgcttatgtaaaagtttacataaactattttt 33319926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 241 - 345
Target Start/End: Complemental strand, 41241308 - 41241205
Alignment:
Q  241 caacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattgttaaattatatttg 340  Q
    ||||||||||||||||  |||||||||||| ||||||||| |||||||| ||||| ||| ||| || || ||||||||||||   |||||||| | ||||    
T  41241308 caacttatagcacaagcacttatcatgatatgcgcttatggataagcttacataagcta-tttctataggaaaagataaaatgaagttaaattgtttttg 41241210  T
Q  341 tatat 345  Q
    |||||    
T  41241209 tatat 41241205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 286
Target Start/End: Original strand, 2416195 - 2416262
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataag 286  Q
    ||||||| ||||| ||||||| || |||||||||||||| ||||||||| |||| |||||||||||||    
T  2416195 gtttggataaacaacttattttcagcttatagcacaagttcttatcatgttaagtgcttatgtataag 2416262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 15757864 - 15757809
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcg 274  Q
    ||||||| ||||||||||||| || ||||||||||||| |||||||||||||||||    
T  15757864 gtttggataaacagcttattttcagcttatagcacaagcgcttatcatgataagcg 15757809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 304
Target Start/End: Complemental strand, 42659335 - 42659264
Alignment:
Q  233 cttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttt 304  Q
    |||||||||| || ||||||||    ||||||||||||||||||||||||||||||| ||||| ||||||||    
T  42659335 cttatttgcagctaatagcacacacacttatcatgataagcgcttatgtataagcttacataagctattttt 42659264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 227 - 277
Target Start/End: Original strand, 43570306 - 43570356
Alignment:
Q  227 aaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgctt 277  Q
    |||||||||||||||| |||||||||||||  |||||||||||||||||||    
T  43570306 aaacagcttatttgcagcttatagcacaagcacttatcatgataagcgctt 43570356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 291
Target Start/End: Original strand, 31744246 - 31744308
Alignment:
Q  227 aaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgc 291  Q
    |||||||||||||| | |||||||||||||  ||||  |||||||||||||||||||||||||||    
T  31744246 aaacagcttatttgtagcttatagcacaagcactta--atgataagcgcttatgtataagcttgc 31744308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 220 - 289
Target Start/End: Original strand, 41851408 - 41851477
Alignment:
Q  220 tttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagctt 289  Q
    |||||| ||||| |||||||||| | ||||||||||| |||||||||| ||| ||||||| |||||||||    
T  41851408 tttggataaacatcttatttgcagcatatagcacaagcgcttatcatgctaaacgcttatatataagctt 41851477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 242 - 345
Target Start/End: Complemental strand, 28330474 - 28330372
Alignment:
Q  242 aacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattgttaaattatatttgt 341  Q
    |||||||||||||||  ||||||||||||||||| |||| |||||||||  ||| |||||| ||  || ||||| |||||||  ||| |||||| |||||    
T  28330474 aacttatagcacaagcacttatcatgataagcgcatatgcataagcttgtgtaagctatttgttttag-aaaaggtaaaataaagtttaattatttttgt 28330376  T
Q  342 atat 345  Q
    ||||    
T  28330375 atat 28330372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 295
Target Start/End: Complemental strand, 41293431 - 41293353
Alignment:
Q  219 gtttggaaaaacagcttattt--gcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataa 295  Q
    ||||||| ||||| |||||||  ||| |||||||||||||||| ||||||| ||||||| ||||| ||||||| |||||    
T  41293431 gtttggataaacaacttatttttgcagcttatagcacaagtgcgtatcatggtaagcgcgtatgtgtaagcttacataa 41293353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 343
Target Start/End: Complemental strand, 43279727 - 43279602
Alignment:
Q  219 gtttggaaaaacagcttatttgcaactt--atagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaaga 316  Q
    ||||||| ||||||||||||||||  ||  ||| | ||||  ||||||||| |||||||| || | ||||||||||||| ||| |||||| | |||||||    
T  43279727 gtttggataaacagcttatttgcagtttttataactcaagcacttatcatgttaagcgctaatttctaagcttgcataagcta-tttttatatcaaaaga 43279629  T
Q  317 taaaatattgttaaattatatttgtat 343  Q
    ||||||| ||| ||||| | |||||||    
T  43279628 taaaataatgtgaaattgtttttgtat 43279602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 304
Target Start/End: Original strand, 3311931 - 3312001
Alignment:
Q  234 ttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttt 304  Q
    |||||| || ||||||||||||||| ||||||||| ||| |||||||||||||| | ||||| || |||||    
T  3311931 ttattttcagcttatagcacaagtgattatcatgaaaagtgcttatgtataagcatacataagctgttttt 3312001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 287
Target Start/End: Complemental strand, 5599234 - 5599180
Alignment:
Q  233 cttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagc 287  Q
    |||||||||| ||||||||| ||||||||||||| |||||| ||||| |||||||    
T  5599234 cttatttgcagcttatagcataagtgcttatcataataagcacttatttataagc 5599180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 289
Target Start/End: Original strand, 38010292 - 38010354
Alignment:
Q  227 aaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagctt 289  Q
    ||||| |||||||||| |||||| |||||||||||||||||||| || |||| || |||||||    
T  38010292 aaacaacttatttgcagcttatatcacaagtgcttatcatgatatgcccttacgtctaagctt 38010354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 288
Target Start/End: Complemental strand, 19608813 - 19608744
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||||| | ||||| |||||||| |||||||||||||  | || |||||||||| ||||||||||||||    
T  19608813 gtttggatatacagcatatttgcagcttatagcacaagcacataccatgataagcacttatgtataagct 19608744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 268 - 333
Target Start/End: Original strand, 20933676 - 20933740
Alignment:
Q  268 ataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattgttaaatt 333  Q
    |||||| |||||||||| |||||||||| ||||||||  || |||||||||||||| |||||||||    
T  20933676 ataagcacttatgtataggcttgcataatctatttttacaa-caaaagataaaataatgttaaatt 20933740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 302
Target Start/End: Original strand, 11863806 - 11863886
Alignment:
Q  222 tggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattt 302  Q
    |||| ||||| ||||||| || |||| |||||||   ||| |||||||||||||||||| |||||||| ||||| ||||||    
T  11863806 tggataaacaacttattttcagcttacagcacaaacacttgtcatgataagcgcttatgcataagcttacataagctattt 11863886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 300
Target Start/End: Complemental strand, 31561926 - 31561870
Alignment:
Q  244 cttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactat 300  Q
    ||||||||||||| | |||||||||||||||||||  ||||||||| ||||| ||||    
T  31561926 cttatagcacaagcgtttatcatgataagcgcttacatataagcttacataagctat 31561870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 288
Target Start/End: Original strand, 2142561 - 2142604
Alignment:
Q  245 ttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||||||||||  ||||||||||||||||||| ||||||||||    
T  2142561 ttatagcacaagaacttatcatgataagcgcttgtgtataagct 2142604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 276
Target Start/End: Complemental strand, 10619401 - 10619346
Alignment:
Q  221 ttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgct 276  Q
    ||||| |||||||||||||| |  |||||| | |||||||||||||||||||||||    
T  10619401 ttggataaacagcttatttgtagtttatagtagaagtgcttatcatgataagcgct 10619346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 5745560 - 5745522
Alignment:
Q  256 gtgcttatcatgataagcgcttatgtataagcttgcata 294  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  5745560 gtgcttaacatgataaccgcttatgtataagcttgcata 5745522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 345
Target Start/End: Complemental strand, 12464671 - 12464546
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagata 318  Q
    ||||||| |||| ||||||||| | |||||| | || |  |||||||||||||| || |||||| |||||| ||||| |||||| |  | | ||||||||    
T  12464671 gtttggataaacggcttatttgtagcttataacgcacgcacttatcatgataagtgcatatgtagaagcttacataagctatttctgta-gaaaaagata 12464573  T
Q  319 aaatattgttaaattatatttgtatat 345  Q
    |||||  |||||||| | |||||||||    
T  12464572 aaataaagttaaattgtttttgtatat 12464546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 36534670 - 36534736
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataa 285  Q
    ||||||| ||||| ||||||| ||  ||||| || ||||||||||||||||||| |||| |||||||    
T  36534670 gtttggataaacaacttattttcagtttataacataagtgcttatcatgataagtgcttgtgtataa 36534736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 304
Target Start/End: Complemental strand, 23974688 - 23974603
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttt 304  Q
    ||||||| || ||||||||||| | |||||| |||||||| | | || ||||||| |||||| |||||||| | ||| ||||||||    
T  23974688 gtttggataagcagcttatttggagcttatatcacaagtgataagcaagataagcacttatgcataagcttacttaagctattttt 23974603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 285
Target Start/End: Original strand, 26626759 - 26626824
Alignment:
Q  220 tttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataa 285  Q
    |||||| ||||| |||||||||| ||||||||| |||  |||||||||||||   |||||||||||    
T  26626759 tttggataaacaacttatttgcagcttatagcataagctcttatcatgataaatacttatgtataa 26626824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 280
Target Start/End: Complemental strand, 39567846 - 39567817
Alignment:
Q  251 cacaagtgcttatcatgataagcgcttatg 280  Q
    ||||||||||||||||||||||||||||||    
T  39567846 cacaagtgcttatcatgataagcgcttatg 39567817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 4606863 - 4606911
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatg 267  Q
    ||||||| ||||| |||||| ||| |||||| |||||||||||||||||    
T  4606863 gtttggataaacaacttattcgcagcttataacacaagtgcttatcatg 4606911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 32569231 - 32569263
Alignment:
Q  129 atctactagcataaacattgtgagactatttgg 161  Q
    ||||||||||||||||||||||| |||||||||    
T  32569231 atctactagcataaacattgtgacactatttgg 32569263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 219 - 304
Target Start/End: Complemental strand, 14956493 - 14956408
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttt 304  Q
    ||||||| ||||| |||||||||| ||||||||||||  |||||||||||||||| ||||||||||||||||||||| ||||||||    
T  14956493 gtttggataaacaacttatttgcagcttatagcacaatcgcttatcatgataagcacttatgtataagcttgcataagctattttt 14956408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 229 - 295
Target Start/End: Original strand, 15179034 - 15179100
Alignment:
Q  229 acagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataa 295  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||    
T  15179034 acagcttatttgcaacttatagcacaagtgcatatcatgatgagcgcttatgtataagattgcataa 15179100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 227 - 304
Target Start/End: Complemental strand, 1058264 - 1058187
Alignment:
Q  227 aaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttt 304  Q
    |||||||||||||||| ||||||||||||| |||||  ||||||||||||||||||||||||| ||||| ||||||||    
T  1058264 aaacagcttatttgcagcttatagcacaagcgcttactatgataagcgcttatgtataagcttacataagctattttt 1058187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 239 - 329
Target Start/End: Original strand, 38353242 - 38353330
Alignment:
Q  239 tgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattgtta 329  Q
    |||| ||||||  |||||||||||||||||||| ||||||||||||||||||||||| ||||||||  | ||||||||||||||| |||||    
T  38353242 tgcagcttatattacaagtgcttatcatgataatcgcttatgtataagcttgcataagctattttt--atgcaaaagataaaataatgtta 38353330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 221 - 304
Target Start/End: Complemental strand, 9130506 - 9130423
Alignment:
Q  221 ttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttt 304  Q
    ||||| ||| |||||||||||| ||||||||||||||| | |||||||||| | |||||||||||||| |||||| ||||||||    
T  9130506 ttggataaatagcttatttgcagcttatagcacaagtggtcatcatgataatcacttatgtataagctcgcataagctattttt 9130423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 343
Target Start/End: Complemental strand, 35534807 - 35534686
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagata 318  Q
    |||||||||||||||||||||||| ||||||||||| | | ||||||| |||||||| |||| |||||||| |||||  || |||||| || ||||||||    
T  35534807 gtttggaaaaacagcttatttgcagcttatagcacaggcgtttatcattataagcgc-tatgcataagcttacataagata-tttttatag-aaaagata 35534711  T
Q  319 aaatattgttaaattatatttgtat 343  Q
    |||||  |||||||| | |||||||    
T  35534710 aaataaagttaaattgtttttgtat 35534686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 40859881 - 40859837
Alignment:
Q  244 cttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  40859881 cttatagcacaagtgcttatcatgataagcgcttatgtataagct 40859837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 41821440 - 41821501
Alignment:
Q  228 aacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgc 291  Q
    ||||||||||||||| ||||  |||||||||||||||||||||||| |||||||||||||||||    
T  41821440 aacagcttatttgcagctta--gcacaagtgcttatcatgataagcacttatgtataagcttgc 41821501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 259 - 304
Target Start/End: Original strand, 38750270 - 38750315
Alignment:
Q  259 cttatcatgataagcgcttatgtataagcttgcataaactattttt 304  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  38750270 cttatcatgataagcgcttatgtataagcttgcataagctattttt 38750315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 288
Target Start/End: Complemental strand, 2833519 - 2833449
Alignment:
Q  219 gtttggaaaaacagcttattt-gcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||||| |||| |||||||| ||| ||||||||| ||||||||||||||||||| ||||||| |||||||    
T  2833519 gtttggataaactgcttattttgcagcttatagcataagtgcttatcatgataagtgcttatgaataagct 2833449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 40981002 - 40981056
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagc 273  Q
    ||||||| |||||||||||||||| ||||||||||||| ||||||| ||||||||    
T  40981002 gtttggataaacagcttatttgcagcttatagcacaagcgcttatcttgataagc 40981056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 334
Target Start/End: Original strand, 12976088 - 12976199
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagata 318  Q
    ||||||| |||||||||||||||| ||   |||||| |  || |||||||||||||||||||||||||||  ||||| ||| ||| || ||||||| |||    
T  12976088 gtttggataaacagcttatttgcagct---agcacaggcactcatcatgataagcgcttatgtataagctcacataagcta-tttctatagcaaaatata 12976183  T
Q  319 aaatattgttaaatta 334  Q
    |||||  |||||||||    
T  12976184 aaataaagttaaatta 12976199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 26215386 - 26215447
Alignment:
Q  227 aaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||| ||||||| || |||||||||| || |||||| ||||||||||||||||||||||||    
T  26215386 aaacaacttattttcagcttatagcacgagcgcttataatgataagcgcttatgtataagct 26215447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 323
Target Start/End: Complemental strand, 29168251 - 29168147
Alignment:
Q  218 ggtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagat 317  Q
    |||||||| | |||| |||| |||| ||||||||||||| | ||||||| | ||| |||||||||||||||  ||||| ||| ||| || ||||||||||    
T  29168251 ggtttggatacacaggttatctgcagcttatagcacaagcgtttatcatcaaaagtgcttatgtataagctcacataagcta-tttctatagcaaaagat 29168153  T
Q  318 aaaata 323  Q
    ||||||    
T  29168152 aaaata 29168147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 36963528 - 36963440
Alignment:
Q  234 ttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaata 323  Q
    ||||||||| ||||||||||||| |||||||||||||| |||||| | |||||||| | ||| ||| ||| |  ||||||||||||||||    
T  36963528 ttatttgcagcttatagcacaagcgcttatcatgataaacgcttacggataagctttcttaagcta-tttctctagcaaaagataaaata 36963440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 288
Target Start/End: Original strand, 2840259 - 2840310
Alignment:
Q  237 tttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||| |||||||    
T  2840259 tttgcagcttatagcataagtgcttatcatgataagtgcttatgaataagct 2840310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 288
Target Start/End: Original strand, 2844946 - 2844997
Alignment:
Q  237 tttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||| |||||||    
T  2844946 tttgcagcttatagcataagtgcttatcatgataagtgcttatgaataagct 2844997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 342
Target Start/End: Original strand, 15180421 - 15180535
Alignment:
Q  227 aaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattg 326  Q
    ||||| |||||||| | ||||||||||||| || ||||||||| ||  ||||| |||||| ||||||||  || ||| || ||||||||||||  ||| |    
T  15180421 aaacaacttatttgaagcttatagcacaagcgcgtatcatgatgagaacttatctataagtttgcataagtta-tttgtacagcaaaagataacgtatcg 15180519  T
Q  327 ttaaattatatttgta 342  Q
    ||||||||| ||||||    
T  15180520 ttaaattatttttgta 15180535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 323
Target Start/End: Original strand, 32975973 - 32976035
Alignment:
Q  260 ttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaata 323  Q
    |||| |||||||| |||||| ||||||||||||||| ||| |||||| ||||||||||||||||    
T  32975973 ttattatgataagtgcttatatataagcttgcataagcta-tttttatagcaaaagataaaata 32976035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 287
Target Start/End: Complemental strand, 40637477 - 40637423
Alignment:
Q  233 cttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagc 287  Q
    |||||||||| ||||||||| ||||||||||||| |||||| ||||| |||||||    
T  40637477 cttatttgcagcttatagcataagtgcttatcataataagcacttatttataagc 40637423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 288
Target Start/End: Complemental strand, 41475248 - 41475179
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||||| ||||| |||||||||||||||||  ||||   ||| ||||||||||| ||||||||||||||    
T  41475248 gtttggataaacaacttatttgcaacttataagacaaacacttgtcatgataagcacttatgtataagct 41475179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 10120648 - 10120708
Alignment:
Q  228 aacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||||||||||||| ||||||||| ||| | || |||||||||| |||||| ||||||||    
T  10120648 aacagcttatttgcagcttatagcataagcgtttctcatgataagtgcttatctataagct 10120708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 29819078 - 29819026
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataa 271  Q
    ||||||| ||||| |||||||||| ||||||||| ||| ||||||||||||||    
T  29819078 gtttggataaacaacttatttgcagcttatagcaaaagggcttatcatgataa 29819026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 34236044 - 34236112
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagc 287  Q
    ||||||| ||||| |||||||||| |||||| |||||  | |||||||||||||| |||||| ||||||    
T  34236044 gtttggataaacaacttatttgcagcttataacacaaacggttatcatgataagcccttatggataagc 34236112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 37353437 - 37353373
Alignment:
Q  219 gtttggaaaaacagctt-atttgcaacttatagcacaagtgcttatcatgataagcgcttatgta 282  Q
    ||||||| ||||| ||| ||||||| ||||||||| || ||||||| ||||||||||||||||||    
T  37353437 gtttggataaacaacttgatttgcagcttatagcataaatgcttatgatgataagcgcttatgta 37353373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 345
Target Start/End: Complemental strand, 12497434 - 12497304
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagc-----gcttatgtataagcttgcataaactattttttaaagcaaa 313  Q
    ||||||| ||||| |||||||||| |||||||  || | | |||||| |||||||     | |||||||||||||||||||| | |||||| | ||||||    
T  12497434 gtttggacaaacaacttatttgcagcttatagagcacgcgtttatcaagataagctaagaggttatgtataagcttgcataagccattttt-atagcaaa 12497336  T
Q  314 agataaaatattgttaaattatatttgtatat 345  Q
    ||||||||||  ||||| || | |||||||||    
T  12497335 agataaaataaagttaacttgtttttgtatat 12497304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 289
Target Start/End: Original strand, 31916537 - 31916567
Alignment:
Q  259 cttatcatgataagcgcttatgtataagctt 289  Q
    |||||||||||||||||||||||||||||||    
T  31916537 cttatcatgataagcgcttatgtataagctt 31916567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 279
Target Start/End: Original strand, 41589579 - 41589625
Alignment:
Q  233 cttatttgcaacttatagcacaagtgcttatcatgataagcgcttat 279  Q
    |||||||||| |||||||||||||   ||||||||||||||||||||    
T  41589579 cttatttgcagcttatagcacaagcatttatcatgataagcgcttat 41589625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 345
Target Start/End: Complemental strand, 10758429 - 10758329
Alignment:
Q  244 cttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattgttaaattatatttgtat 343  Q
    |||||||||| ||  |||||||||||||| | |||||||||||||  | ||||||| ||| || ||||||  ||||||||  |||||||| | |||||||    
T  10758429 cttatagcactagcacttatcatgataagtgattatgtataagctcacgtaaacta-tttctatagcaaatcataaaataaagttaaattgtttttgtat 10758331  T
Q  344 at 345  Q
    ||    
T  10758330 at 10758329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 304
Target Start/End: Original strand, 28763253 - 28763330
Alignment:
Q  227 aaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttt 304  Q
    |||||||||||||| ||||||||||| ||   ||||||||||||||   ||||||||| ||| |||||  ||||||||    
T  28763253 aaacagcttatttgtaacttatagcataaacacttatcatgataagaatttatgtatatgctggcataggctattttt 28763330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 323
Target Start/End: Original strand, 30151041 - 30151113
Alignment:
Q  253 caagtgcttatcatgataagcgc--ttatgtataagcttgcataaactattttttaaagcaaaagataaaata 323  Q
    |||| |||||||||||||||| |  |||| ||||||||||||||| ||||||| || || | |||||||||||    
T  30151041 caagcgcttatcatgataagcccacttatttataagcttgcataagctattttctatagtataagataaaata 30151113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 288
Target Start/End: Complemental strand, 37444563 - 37444534
Alignment:
Q  259 cttatcatgataagcgcttatgtataagct 288  Q
    ||||||||||||||||||||||||||||||    
T  37444563 cttatcatgataagcgcttatgtataagct 37444534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 900885 - 900821
Alignment:
Q  219 gtttggaaaaacagct-tatttgcaacttatagcacaagtgcttatcatgataagcgcttatgta 282  Q
    ||||||| ||||| || |||||||| ||||||||||||  |||||||||||||| | ||||||||    
T  900885 gtttggataaacaactatatttgcatcttatagcacaaacgcttatcatgataaacacttatgta 900821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 281
Target Start/End: Complemental strand, 9956998 - 9956938
Alignment:
Q  221 ttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgt 281  Q
    ||||| ||||| |||||||| | |||||||||||||  ||||||||||||  |||||||||    
T  9956998 ttggataaacaacttatttgtagcttatagcacaagcacttatcatgatacacgcttatgt 9956938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 10114397 - 10114441
Alignment:
Q  244 cttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||||||| ||||| |||| |||||||| |||||||||||||||    
T  10114397 cttatagcataagtggttatgatgataagtgcttatgtataagct 10114441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 51)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 219 - 288
Target Start/End: Complemental strand, 5894351 - 5894282
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  5894351 gtttggataaacagcttatttgaagcttatagcacaagtgcttatcatgataagcgcttatgtataagct 5894282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 219 - 320
Target Start/End: Complemental strand, 1510507 - 1510407
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagata 318  Q
    ||||||| |||||||||||||| | ||||||||||||| ||||||| |||||||| ||||| |||||||||||| || ||| |||||||| |||||||||    
T  1510507 gtttggataaacagcttatttgtatcttatagcacaagcgcttatcttgataagcacttatatataagcttgcaaaagcta-tttttaaaacaaaagata 1510409  T
Q  319 aa 320  Q
    ||    
T  1510408 aa 1510407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 219 - 304
Target Start/End: Complemental strand, 33541906 - 33541821
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttt 304  Q
    ||||||| ||||| ||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||| ||||  |||||||    
T  33541906 gtttggataaacaacttatttgcagtttatagcacaagtgtttatcatgataagcgcttatgtataagcttgaataagatattttt 33541821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 219 - 288
Target Start/End: Complemental strand, 47499031 - 47498962
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  47499031 gtttggataaacaacttatttgcagcttatagcacaagtgcttatcatgataagcgcttgtgtataagct 47498962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 88 - 171
Target Start/End: Original strand, 3069709 - 3069792
Alignment:
Q  88 aacaaaactatgtacccgttccaattggcttatctacactcatctactagcataaacattgtgagactatttgggagaattcac 171  Q
    ||||||||||| | || ||| | |||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||    
T  3069709 aacaaaactatatgcctgtttcgattggcttatctgcactcatctactagcataaacattgtgagactgtctgggagaattcac 3069792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 253 - 343
Target Start/End: Complemental strand, 14385927 - 14385838
Alignment:
Q  253 caagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattgttaaattatatttgtat 343  Q
    |||||||||||||||||||| ||||||||||||||| ||| ||||||| ||||| ||||||||||| |||| ||||||||| | |||||||    
T  14385927 caagtgcttatcatgataagagcttatgtataagctggcagaaactat-ttttatagcaaaagatagaataatgttaaattgtttttgtat 14385838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 219 - 321
Target Start/End: Original strand, 37473271 - 37473372
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagata 318  Q
    ||||||| ||||| |||||||||| ||||| |||||||| |||||||||| |||| ||||||||||||||| ||||| ||| |||||| |||||| ||||    
T  37473271 gtttggataaacaacttatttgcagcttattgcacaagttcttatcatgacaagcacttatgtataagcttacataagcta-tttttatagcaaatgata 37473369  T
Q  319 aaa 321  Q
    |||    
T  37473370 aaa 37473372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 219 - 304
Target Start/End: Complemental strand, 41195392 - 41195307
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttt 304  Q
    ||||||| ||| | |||||||||| ||||||||||||| ||||||| |||||| |||||||||||||| || ||||||||||||||    
T  41195392 gtttggataaataacttatttgcagcttatagcacaagcgcttatcctgataatcgcttatgtataagtttacataaactattttt 41195307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 237 - 321
Target Start/End: Complemental strand, 3234203 - 3234120
Alignment:
Q  237 tttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaa 321  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||| ||| | || | ||||||||||||||    
T  3234203 tttgcaacttatagcacaagcgcttatcatgataagcgcttatatataagcgtgcataagcta-tattcatagcaaaagataaaa 3234120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 227 - 343
Target Start/End: Original strand, 14331669 - 14331784
Alignment:
Q  227 aaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattg 326  Q
    |||||||||||||| | ||||||||||||| |||| ||||||||||| ||||||||||||||  ||||| ||| ||| || || | |||||||||||  |    
T  14331669 aaacagcttatttgaagcttatagcacaagcgcttctcatgataagcacttatgtataagctaacataagcta-tttctacagaacaagataaaataaag 14331767  T
Q  327 ttaaattatatttgtat 343  Q
    ||||||| | |||||||    
T  14331768 ttaaattgtttttgtat 14331784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 219 - 302
Target Start/End: Original strand, 51688577 - 51688660
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattt 302  Q
    ||||||| ||||| |||||||||| ||||||| ||||||||||||||||||||| | |||| ||||||||| ||| | ||||||    
T  51688577 gtttggataaacaacttatttgcagcttatagtacaagtgcttatcatgataagtgtttatatataagcttacatgagctattt 51688660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 244 - 302
Target Start/End: Complemental strand, 24552513 - 24552455
Alignment:
Q  244 cttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattt 302  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||| ||||| ||||||    
T  24552513 cttatagcacaagtgattatcatgataagcgcttatgtacaagcttacataagctattt 24552455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 234 - 304
Target Start/End: Original strand, 42391253 - 42391323
Alignment:
Q  234 ttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttt 304  Q
    ||||||||  |||| |||||||  ||||||||||||||| |||||||||||||||||| ||||||||||||    
T  42391253 ttatttgcggcttacagcacaaaagcttatcatgataagtgcttatgtataagcttgcttaaactattttt 42391323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 333
Target Start/End: Original strand, 18556824 - 18556912
Alignment:
Q  244 cttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattgttaaatt 333  Q
    |||||||||||||  |||||| |||  ||||||| |||||||||||| |||| ||| ||||||  |||||||||||||||||||||||||    
T  18556824 cttatagcacaagcacttatcgtgacgagcgcttgtgtataagcttgtataagcta-tttttattgcaaaagataaaatattgttaaatt 18556912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 304
Target Start/End: Original strand, 41505559 - 41505644
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttt 304  Q
    ||||||| |||||||||||||||| ||||||||||||  |||||| |||||||| ||||||| ||  |||| ||||| ||||||||    
T  41505559 gtttggataaacagcttatttgcagcttatagcacaaacgcttatgatgataagtgcttatgcattggcttacataagctattttt 41505644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 323
Target Start/End: Original strand, 30191863 - 30191966
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagata 318  Q
    ||||||| ||| ||||||||| |||||||||||| |||||||||| ||||||||| ||| ||||||||  | | ||| ||| |||||| ||||||| |||    
T  30191863 gtttggataaatagcttatttacaacttatagcagaagtgcttattatgataagcacttgtgtataagtatacctaagcta-tttttatagcaaaaaata 30191961  T
Q  319 aaata 323  Q
    |||||    
T  30191962 aaata 30191966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 286
Target Start/End: Complemental strand, 27146436 - 27146369
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataag 286  Q
    ||||||| ||| |||||||||||| ||||||||| |||| | |||||||||||||| |||||||||||    
T  27146436 gtttggataaatagcttatttgcagcttatagcataagtacatatcatgataagcgtttatgtataag 27146369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 259 - 321
Target Start/End: Complemental strand, 44932090 - 44932029
Alignment:
Q  259 cttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaa 321  Q
    ||||||||||||||| |||| |||||||||||||||||||| | |||| ||||||||||||||    
T  44932090 cttatcatgataagcacttaggtataagcttgcataaacta-tatttatagcaaaagataaaa 44932029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 304
Target Start/End: Original strand, 1509624 - 1509709
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttt 304  Q
    ||||||| |||||||||||||  | |||| |||||||   |||||||||||||| |||||| ||||||||||||| | ||||||||    
T  1509624 gtttggataaacagcttatttttagcttacagcacaatcacttatcatgataagtgcttatatataagcttgcatgacctattttt 1509709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 304
Target Start/End: Original strand, 5741534 - 5741619
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttt 304  Q
    ||||||| ||| | ||||||||   |||||||||||||  | |||||||||||||||||||||||||| || ||||| ||||||||    
T  5741534 gtttggataaatatcttatttgtggcttatagcacaagcacctatcatgataagcgcttatgtataagtttacataagctattttt 5741619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 304
Target Start/End: Complemental strand, 17727293 - 17727208
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttt 304  Q
    ||||||| ||||| ||||| || | |||||||||||||  ||||||| ||||||||||||  |||||| |||||||| ||||||||    
T  17727293 gtttggataaacaacttatgtgtagcttatagcacaagcacttatcaagataagcgcttagatataaggttgcataagctattttt 17727208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 288
Target Start/End: Original strand, 22343960 - 22344029
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||||| || || |||||||||||||||  ||||||| ||||||||||||||| ||||||| |||||||    
T  22343960 gtttggataatcaacttatttgcaacttaccgcacaagcgcttatcatgataagagcttatgcataagct 22344029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 24562501 - 24562452
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatga 268  Q
    ||||||| |||||||||||||||| ||||||||||| |||||||||||||    
T  24562501 gtttggataaacagcttatttgcagcttatagcacatgtgcttatcatga 24562452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 288
Target Start/End: Original strand, 38247326 - 38247394
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||||| |||||||| ||||||| |||||||||||||  |||||||||||| || ||||||||||||||    
T  38247326 gtttggataaacagct-atttgcagcttatagcacaagcacttatcatgatatgcacttatgtataagct 38247394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 6556890 - 6556946
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgc 275  Q
    ||||||| ||||||||| |||| |  |||||||||||||||||||||||||||||||    
T  6556890 gtttggataaacagcttctttgtagtttatagcacaagtgcttatcatgataagcgc 6556946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 38116356 - 38116304
Alignment:
Q  236 atttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||||| ||||||| ||| | |||||||||||||||||||||||||||||||    
T  38116356 atttgcagcttatagtacatgcgcttatcatgataagcgcttatgtataagct 38116304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 286
Target Start/End: Complemental strand, 1829142 - 1829075
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataag 286  Q
    ||||||| ||||| |||||||| ||| ||||||| ||   ||||||||||||||||||||||||||||    
T  1829142 gtttggataaacaacttatttgaaacctatagcataaacacttatcatgataagcgcttatgtataag 1829075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 9572282 - 9572227
Alignment:
Q  233 cttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    |||||||||| |||||||||||||||| ||||||||| |||||| |||||| ||||    
T  9572282 cttatttgcagcttatagcacaagtgcctatcatgatcagcgctaatgtattagct 9572227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 333
Target Start/End: Original strand, 5709434 - 5709548
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagata 318  Q
    |||||||  |||| |||||||| | ||||||||||||     |||||| ||||||||||||||||| ||||| || | ||||||||  |||| ||| |||    
T  5709434 gtttggatgaacaacttatttgaagcttatagcacaaacaagtatcattataagcgcttatgtatatgcttgtattagctatttttataagctaaatata 5709533  T
Q  319 aaatattgttaaatt 333  Q
    ||||| |||||||||    
T  5709534 aaatagtgttaaatt 5709548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 27820528 - 27820470
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgctt 277  Q
    ||||||| ||||| |||||||||| ||||||||| ||| ||||||||||||||| ||||    
T  27820528 gtttggataaacaacttatttgcagcttatagcataagcgcttatcatgataagggctt 27820470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 277
Target Start/End: Complemental strand, 33546648 - 33546590
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgctt 277  Q
    ||||||| |||||||||||| ||| |||| |||||||||| ||||||||||| ||||||    
T  33546648 gtttggataaacagcttattcgcagcttaaagcacaagtgtttatcatgatatgcgctt 33546590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 288
Target Start/End: Complemental strand, 14576843 - 14576782
Alignment:
Q  227 aaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||| ||||||| || |||||||||||||  ||||||||||||||| ||||| ||||||||    
T  14576843 aaacatcttatttccagcttatagcacaagctcttatcatgataagcacttatttataagct 14576782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 288
Target Start/End: Original strand, 15942237 - 15942284
Alignment:
Q  241 caacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    |||||||| ||  ||||||||||||||||||| |||||||||||||||    
T  15942237 caacttattgcttaagtgcttatcatgataagtgcttatgtataagct 15942284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 323
Target Start/End: Original strand, 29904633 - 29904734
Alignment:
Q  220 tttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataa 319  Q
    |||||| ||||| ||||| |||| |||||||  |||| ||||||||||||||  ||||||| |||||||   |||| ||| |||||| ||||||||||||    
T  29904633 tttggataaacaacttatatgcagcttatagttcaagcgcttatcatgataaaagcttatg-ataagctcatataagcta-tttttatagcaaaagataa 29904730  T
Q  320 aata 323  Q
    ||||    
T  29904731 aata 29904734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 331
Target Start/End: Original strand, 42174770 - 42174840
Alignment:
Q  260 ttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattgttaaa 331  Q
    |||| |||||||| |||||||||||||||||||||  ||| |||||| | ||||||||||| || |||||||    
T  42174770 ttattatgataagggcttatgtataagcttgcataggcta-tttttatatcaaaagataaagtaatgttaaa 42174840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 281
Target Start/End: Original strand, 473038 - 473100
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgt 281  Q
    ||||||| ||||| |||||||||| |||| | || ||| |||||||||| |||||||||||||    
T  473038 gtttggataaacaacttatttgcagcttacaacaaaagcgcttatcatggtaagcgcttatgt 473100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 273
Target Start/End: Original strand, 27976372 - 27976406
Alignment:
Q  239 tgcaacttatagcacaagtgcttatcatgataagc 273  Q
    |||| ||||||||||||||||||||||||||||||    
T  27976372 tgcagcttatagcacaagtgcttatcatgataagc 27976406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 30581684 - 30581738
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagc 273  Q
    ||||||| |||||| ||||||||| ||||||| |||||| ||| |||||||||||    
T  30581684 gtttggataaacagtttatttgcagcttatagaacaagtacttttcatgataagc 30581738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 287
Target Start/End: Complemental strand, 31774221 - 31774167
Alignment:
Q  233 cttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagc 287  Q
    |||||||||| ||||||| | ||||||||||||| |||||| ||||| |||||||    
T  31774221 cttatttgcagcttatagtataagtgcttatcataataagcacttatttataagc 31774167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 34290121 - 34290187
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataa 285  Q
    ||||||| ||||| ||||||||||| ||| |||| ||  |||||| ||||||||||||||| |||||    
T  34290121 gtttggataaacatcttatttgcaatttacagcataaacgcttattatgataagcgcttatatataa 34290187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 45975572 - 45975638
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataa 285  Q
    ||||||| ||| |||||||||| | |||||| |||||   ||||||||||||||| |||||||||||    
T  45975572 gtttggataaatagcttatttgtagcttataacacaaacacttatcatgataagcccttatgtataa 45975638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 302
Target Start/End: Original strand, 2295014 - 2295059
Alignment:
Q  257 tgcttatcatgataagcgcttatgtataagcttgcataaactattt 302  Q
    |||||||||||||||| ||||||| |||||||| ||||| ||||||    
T  2295014 tgcttatcatgataagtgcttatgcataagcttacataagctattt 2295059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 304
Target Start/End: Original strand, 5720853 - 5720938
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttt 304  Q
    ||||||| ||| | ||||||||   |||||| ||||||  | |||||||||||||||||||||||||| || | ||| ||||||||    
T  5720853 gtttggataaatatcttatttgtggcttataacacaagcacctatcatgataagcgcttatgtataagtttacgtaagctattttt 5720938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 11137801 - 11137846
Alignment:
Q  244 cttatagcacaagtgcttatcatgataagcgcttatgtataagctt 289  Q
    ||||||||| |||||| |||||||||||||  ||||||||||||||    
T  11137801 cttatagcataagtgcatatcatgataagcaattatgtataagctt 11137846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 256
Target Start/End: Complemental strand, 34795602 - 34795565
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaag 256  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  34795602 gtttggataaacagcttatttgcatcttatagcacaag 34795565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 288
Target Start/End: Complemental strand, 35058945 - 35058873
Alignment:
Q  219 gtttggaaaaacagcttattt-gcaacttatagcacaagtgcttatcatgata--agcgcttatgtataagct 288  Q
    ||||||| ||||||||||||| ||||||||||||| |||  ||||||||||||   | |||||||||||||||    
T  35058945 gtttggataaacagcttattttgcaacttatagcataagcacttatcatgataggtgtgcttatgtataagct 35058873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 288
Target Start/End: Original strand, 7069183 - 7069251
Alignment:
Q  220 tttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    |||||| ||||||||||||| || ||||||||||  ||  ||||| |||||||| |||| |||||||||    
T  7069183 tttggataaacagcttatttccagcttatagcactggtatttatcgtgataagcacttaagtataagct 7069251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 323
Target Start/End: Original strand, 17830026 - 17830129
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagata 318  Q
    ||||||| ||||| | ||| | || |||||| ||||||  ||||||||||||||| ||||| |||| | || ||||| ||| |||||| |||||| ||||    
T  17830026 gtttggataaacaacatatcttcagcttatatcacaagcacttatcatgataagcacttatctatacgattacataagcta-tttttatagcaaatgata 17830124  T
Q  319 aaata 323  Q
    |||||    
T  17830125 aaata 17830129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 271
Target Start/End: Complemental strand, 24417869 - 24417817
Alignment:
Q  220 tttggaaaaacagctta-tttgcaacttatagcacaagtgcttatcatgataa 271  Q
    |||||| |||||| ||| |||||| |||||| |||||||||||||||||||||    
T  24417869 tttggataaacaggttaatttgcagcttataacacaagtgcttatcatgataa 24417817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 33186173 - 33186217
Alignment:
Q  244 cttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||||||||| |||||||| ||||||| |||||||| |||||||    
T  33186173 cttatagcacaggtgcttattatgataaccgcttatgcataagct 33186217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 345
Target Start/End: Complemental strand, 41184767 - 41184723
Alignment:
Q  301 tttttaaagcaaaagataaaatattgttaaattatatttgtatat 345  Q
    |||||| |||||||||||||||| ||||||||| | |||||||||    
T  41184767 tttttatagcaaaagataaaataatgttaaattgtttttgtatat 41184723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 227 - 305
Target Start/End: Original strand, 34430596 - 34430674
Alignment:
Q  227 aaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactatttttt 305  Q
    ||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||| ||||    
T  34430596 aaacatcttatttgcagcttatagcacaagtgcttatcatgataggcgcttatgtataagcttccataagctatatttt 34430674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 219 - 295
Target Start/End: Original strand, 6538389 - 6538465
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataa 295  Q
    ||||||| ||| |||||||||||| |||||||||||||  ||||| |||||||||||||||||||||||||||||||    
T  6538389 gtttggataaatagcttatttgcagcttatagcacaagcacttataatgataagcgcttatgtataagcttgcataa 6538465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 234 - 333
Target Start/End: Original strand, 18076083 - 18076181
Alignment:
Q  234 ttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattgttaaatt 333  Q
    ||||||||| ||||||||||||| ||||||||| |||||| |||||||||||||||||||||  || |||||| ||||||||| ||||||  ||||||||    
T  18076083 ttatttgcagcttatagcacaagcgcttatcataataagcacttatgtataagcttgcataagtta-tttttatagcaaaagagaaaataaggttaaatt 18076181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 219 - 288
Target Start/End: Original strand, 264253 - 264322
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    |||||||  ||||||| ||||||| ||||||||||||||||||||||||||||| |||||| ||||||||    
T  264253 gtttggattaacagctaatttgcagcttatagcacaagtgcttatcatgataagtgcttatatataagct 264322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 29754249 - 29754193
Alignment:
Q  247 atagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactatttt 303  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||    
T  29754249 atagcacaagcgcttatcatgataagcgcttatgtattagcttgcataagctatttt 29754193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 219 - 302
Target Start/End: Original strand, 24626167 - 24626250
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattt 302  Q
    ||||||| ||||| ||||||| || |||||||||||| ||||||||||||| |  |||||||||||||||| ||||| ||||||    
T  24626167 gtttggataaacaacttatttacagcttatagcacaaatgcttatcatgatgattgcttatgtataagcttacataagctattt 24626250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 259 - 345
Target Start/End: Complemental strand, 12836330 - 12836245
Alignment:
Q  259 cttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattgttaaattatatttgtatat 345  Q
    |||||| ||||||| |||||||||||||||||||||| | |  ||||||||||||| |||||||| ||||||||||| ||| |||||    
T  12836330 cttatcttgataagagcttatgtataagcttgcataagc-aacttttaaagcaaaatataaaataatgttaaattatttttctatat 12836245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 259 - 347
Target Start/End: Original strand, 30536390 - 30536477
Alignment:
Q  259 cttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattgttaaattatatttgtatattt 347  Q
    |||||||||||||  ||||||||||||| |||||||| ||| || ||| |||||| ||||||||| ||||||||| | |||||||||||    
T  30536390 cttatcatgataaaagcttatgtataagtttgcataagcta-ttattatagcaaatgataaaataatgttaaattgtttttgtatattt 30536477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 232 - 305
Target Start/End: Complemental strand, 32014234 - 32014161
Alignment:
Q  232 gcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactatttttt 305  Q
    ||||||||||| ||| ||||||||||||||||||  ||||||  || ||| ||||||||||||| |||||||||    
T  32014234 gcttatttgcagcttctagcacaagtgcttatcaatataagcatttgtgtgtaagcttgcataagctatttttt 32014161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 288
Target Start/End: Original strand, 35069442 - 35069503
Alignment:
Q  227 aaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||| |||||||||| ||||||||||||| | ||||||||||||| ||||||| |||||||    
T  35069442 aaacaacttatttgcagcttatagcacaagcgtttatcatgataagtgcttatgcataagct 35069503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 285
Target Start/End: Complemental strand, 23063702 - 23063650
Alignment:
Q  233 cttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataa 285  Q
    |||||||||| |||||||||||| || ||||||||||||||| ||||||||||    
T  23063702 cttatttgcatcttatagcacaaatgattatcatgataagcgtttatgtataa 23063650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 302
Target Start/End: Original strand, 30926435 - 30926493
Alignment:
Q  244 cttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattt 302  Q
    ||||||||||||| ||||||||||||||||  ||| |||||||||| ||||| ||||||    
T  30926435 cttatagcacaagggcttatcatgataagcaattaagtataagcttacataagctattt 30926493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 241 - 286
Target Start/End: Complemental strand, 10401184 - 10401139
Alignment:
Q  241 caacttatagcacaagtgcttatcatgataagcgcttatgtataag 286  Q
    |||||||| |||||||  ||||||||||||||||||||||||||||    
T  10401184 caacttattgcacaagcacttatcatgataagcgcttatgtataag 10401139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 34882567 - 34882526
Alignment:
Q  241 caacttatagcacaagtgcttatcatgataagcgcttatgta 282  Q
    |||||||||| |||| ||||||||||||||||||||||||||    
T  34882567 caacttatagaacaaatgcttatcatgataagcgcttatgta 34882526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 346
Target Start/End: Original strand, 8147614 - 8147700
Alignment:
Q  258 gcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattgttaaattatatttgtatatt 346  Q
    ||||||||||||||||||||| | |||||| | ||||| ||| |||||| ||||||||||||||||  ||| |||| | ||||||||||    
T  8147614 gcttatcatgataagcgcttaagcataagc-tacataagcta-tttttatagcaaaagataaaataaagttgaattgtttttgtatatt 8147700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 323
Target Start/End: Complemental strand, 35070812 - 35070725
Alignment:
Q  236 atttgcaacttatagcacaagtgcttatcatgataagcgcttatg-tataagcttgcataaactattttttaaagcaaaagataaaata 323  Q
    ||||||| |||||||||||||  ||| ||||||||||| || ||| ||||||||| ||||| ||| |||||| || |||||||||||||    
T  35070812 atttgcaccttatagcacaagcacttgtcatgataagcactaatgctataagcttacataagcta-tttttatagaaaaagataaaata 35070725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 266
Target Start/End: Original strand, 14929606 - 14929653
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcat 266  Q
    ||||||| ||||| || ||||||| |||||||||||||||||||||||    
T  14929606 gtttggacaaacaactcatttgcagcttatagcacaagtgcttatcat 14929653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 333
Target Start/End: Complemental strand, 30536701 - 30536643
Alignment:
Q  274 gcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattgttaaatt 333  Q
    |||||||||||||||||||||| ||| |||||| |||||||||||| |||  ||||||||    
T  30536701 gcttatgtataagcttgcataagcta-tttttatagcaaaagataagataacgttaaatt 30536643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 280
Target Start/End: Original strand, 32014113 - 32014160
Alignment:
Q  233 cttatttgcaacttatagcacaagtgcttatcatgataagcgcttatg 280  Q
    |||||||||| ||||||| | ||||||||||||| |||||||||||||    
T  32014113 cttatttgcagcttatagaaaaagtgcttatcattataagcgcttatg 32014160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 272
Target Start/End: Complemental strand, 658618 - 658580
Alignment:
Q  234 ttatttgcaacttatagcacaagtgcttatcatgataag 272  Q
    |||||| ||||||||||||||||| ||||||||||||||    
T  658618 ttattttcaacttatagcacaagtacttatcatgataag 658580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 271
Target Start/End: Original strand, 9632785 - 9632835
Alignment:
Q  221 ttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataa 271  Q
    ||||| ||||| |||||||||| |||||||||||| |||||||||| ||||    
T  9632785 ttggataaacaacttatttgcagcttatagcacaaatgcttatcataataa 9632835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 266
Target Start/End: Complemental strand, 10645516 - 10645470
Alignment:
Q  220 tttggaaaaacagcttatttgcaacttatagcacaagtgcttatcat 266  Q
    |||||| ||||| |||||||||| |||||||||||| ||||||||||    
T  10645516 tttggataaacaacttatttgcagcttatagcacaaatgcttatcat 10645470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 6910045 - 6909988
Alignment:
Q  245 ttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattt 302  Q
    ||||| ||||||  |||||||||||||| |||||||||||| ||| ||||| ||||||    
T  6910045 ttatatcacaagcacttatcatgataagtgcttatgtataaacttacataagctattt 6909988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 12628276 - 12628316
Alignment:
Q  248 tagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||| ||| |||||||||||||||||||||||| ||||||    
T  12628276 tagcataagagcttatcatgataagcgcttatgtgtaagct 12628316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 35071247 - 35071203
Alignment:
Q  260 ttatcatgataagcgcttatgtataagcttgcataaactattttt 304  Q
    |||| ||||||||||||| | ||||||||||||||| ||||||||    
T  35071247 ttataatgataagcgcttgtatataagcttgcataagctattttt 35071203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 40)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 218 - 323
Target Start/End: Complemental strand, 7319210 - 7319106
Alignment:
Q  218 ggtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagat 317  Q
    |||||| | ||||||||||||| || ||||||||||||| |||||||||||||||| |||||| |||||||| ||||| ||| ||| ||| |||||| ||    
T  7319210 ggtttgaataaacagcttatttacagcttatagcacaagcgcttatcatgataagcacttatgcataagcttacataagcta-tttctaacgcaaaatat 7319112  T
Q  318 aaaata 323  Q
    ||||||    
T  7319111 aaaata 7319106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 219 - 323
Target Start/End: Complemental strand, 3735689 - 3735586
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagata 318  Q
    ||||||| ||||| | |||||||| ||||||||||||| | ||||||||||||||||||||| |||||||| ||||| ||| ||| || ||||||||||     
T  3735689 gtttggataaacaacctatttgcagcttatagcacaagagattatcatgataagcgcttatggataagcttacataagcta-tttctatagcaaaagatg 3735591  T
Q  319 aaata 323  Q
    |||||    
T  3735590 aaata 3735586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 221 - 285
Target Start/End: Complemental strand, 19460572 - 19460508
Alignment:
Q  221 ttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataa 285  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||    
T  19460572 ttggataaacagcttatttgcagcttatagcacaaatgcttatcatgataagcacttatgtataa 19460508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 39105360 - 39105415
Alignment:
Q  233 cttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  39105360 cttatttgcagcttatagcataagtgcttatcatgataagcgcttatgtataagct 39105415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 301
Target Start/End: Original strand, 32372496 - 32372578
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactatt 301  Q
    ||||||| ||||| |||||||||| |||||||||||||  ||||||||||||||| ||||||||||  ||| |||||||||||    
T  32372496 gtttggataaacaacttatttgcagcttatagcacaagcacttatcatgataagcccttatgtatacacttacataaactatt 32372578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 219 - 288
Target Start/End: Complemental strand, 9202936 - 9202867
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||||| ||||| |||||||||| ||||||||||||||| ||||||||||||| |||||| ||||||||    
T  9202936 gtttggataaacatcttatttgcagcttatagcacaagtgtttatcatgataagtgcttatatataagct 9202867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 323
Target Start/End: Original strand, 32941343 - 32941445
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagata 318  Q
    ||||||| |||||||||||| ||| ||||||||| |||  |||| ||||||||||||||| |||||||||||||||  |||  ||||| |||||||||||    
T  32941343 gtttggataaacagcttattagcagcttatagca-aagcacttaccatgataagcgcttacgtataagcttgcataggcta-gttttagagcaaaagata 32941440  T
Q  319 aaata 323  Q
    |||||    
T  32941441 aaata 32941445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 333
Target Start/End: Complemental strand, 13697957 - 13697844
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagata 318  Q
    ||||||| ||||| |||||||||| |||||| || |||   ||||||||||||| | || || |||| |||||||||| || |||||| |||||||||||    
T  13697957 gtttggataaacaacttatttgcagcttataacataagcatttatcatgataagtgattttgcataaacttgcataaatta-tttttatagcaaaagata 13697859  T
Q  319 aaatattgttaaatt 333  Q
    ||||| |||||||||    
T  13697858 aaataatgttaaatt 13697844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 333
Target Start/End: Complemental strand, 25461953 - 25461841
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagata 318  Q
    ||||||| || ||| ||||||| | |||||| |||||| ||||||||||||||| | |||| ||||||||||||||| ||| |||||| |||| |||||     
T  25461953 gtttggataagcaggttatttgtagcttataacacaagcgcttatcatgataagtggttatatataagcttgcataagcta-tttttatagcagaagat- 25461856  T
Q  319 aaatattgttaaatt 333  Q
    |||||| ||||||||    
T  25461855 aaatatcgttaaatt 25461841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 219 - 296
Target Start/End: Complemental strand, 16938065 - 16937988
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaa 296  Q
    ||||||| ||||| |||||||| | |||||| |||||||| |||||||||||||| ||||||||| || |||||||||    
T  16938065 gtttggacaaacaacttatttgaagcttataacacaagtgtttatcatgataagcacttatgtattagtttgcataaa 16937988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 42646552 - 42646597
Alignment:
Q  244 cttatagcacaagtgcttatcatgataagcgcttatgtataagctt 289  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  42646552 cttatagcacaagtgcttatcatgataagcgcttatatataagctt 42646597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 220 - 288
Target Start/End: Complemental strand, 1465206 - 1465138
Alignment:
Q  220 tttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    |||||| |||||| ||||| |||  |||||||| |||||||||||| ||||||||||||||||||||||    
T  1465206 tttggataaacagattattcgcagtttatagcataagtgcttatcaagataagcgcttatgtataagct 1465138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 7984865 - 7984929
Alignment:
Q  224 gaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    |||||||| |||||||||| ||||||| ||| | |||||||||||||||||||||||| ||||||    
T  7984865 gaaaaacaacttatttgcagcttatagtacatgcgcttatcatgataagcgcttatgtttaagct 7984929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 286
Target Start/End: Original strand, 10639826 - 10639892
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataag 286  Q
    ||||||| ||||||||||||||||||||| |||| ||||| |||||| ||||||| ||||||||||||    
T  10639826 gtttggataaacagcttatttgcaactta-agcaaaagtggttatcacgataagcacttatgtataag 10639892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 302
Target Start/End: Complemental strand, 40439152 - 40439070
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattt 302  Q
    ||||||| |||||||||||||||| |||||| |||||| ||||||| ||||| || || |||||||||||| ||||| ||||||    
T  40439152 gtttggataaacagcttatttgcaccttata-cacaagcgcttatcttgataggcactcatgtataagcttacataagctattt 40439070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 301
Target Start/End: Complemental strand, 24030600 - 24030518
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactatt 301  Q
    ||||||| |||||||||||||||| |||||||||||||  |||||||||||||| ||   ||||||||||  ||||| |||||    
T  24030600 gtttggataaacagcttatttgcagcttatagcacaagcacttatcatgataagtgcgcgtgtataagctcacataagctatt 24030518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 281
Target Start/End: Complemental strand, 32703636 - 32703574
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgt 281  Q
    |||| |||||||| |||||||||| |||||||||||||   ||||||||||||||||||||||    
T  32703636 gtttagaaaaacaacttatttgcagcttatagcacaagcatttatcatgataagcgcttatgt 32703574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 36797266 - 36797204
Alignment:
Q  227 aaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagctt 289  Q
    |||||| |||||||||||||||||||||||  |||||||| ||||  ||||||||||||||||    
T  36797266 aaacagtttatttgcaacttatagcacaagcacttatcattataactgcttatgtataagctt 36797204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 288
Target Start/End: Complemental strand, 42573968 - 42573898
Alignment:
Q  219 gtttggaaaaacagctta-tttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||||| |||||||||| |||||| ||||||||   || |||||||||||||||||||||||||||||||    
T  42573968 gtttggataaacagcttaatttgcagcttatagcctgagcgcttatcatgataagcgcttatgtataagct 42573898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 12425462 - 12425519
Alignment:
Q  228 aacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataa 285  Q
    |||| |||||||||| ||||||| ||||||| |||||||||||| |||||||||||||    
T  12425462 aacatcttatttgcagcttatagtacaagtgtttatcatgataaacgcttatgtataa 12425519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 304
Target Start/End: Original strand, 25460964 - 25461049
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttt 304  Q
    ||||||| ||||||||||| |  | ||||||||| |||  |||||||||||||| |||||| ||||||||||| ||| ||||||||    
T  25460964 gtttggataaacagcttatatttagcttatagcataagcacttatcatgataagagcttatatataagcttgcgtaagctattttt 25461049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 288
Target Start/End: Original strand, 28776857 - 28776926
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||||| ||||| |||||||||| ||||||||  |||  |||||||||||||| |||||||||||||||    
T  28776857 gtttggataaacaacttatttgcagcttatagcctaagcacttatcatgataagtgcttatgtataagct 28776926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 323
Target Start/End: Complemental strand, 16458136 - 16458073
Alignment:
Q  259 cttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaata 323  Q
    |||||| ||||||| |||||| ||||||||||||||| ||| |||||| ||||||||||||||||    
T  16458136 cttatcctgataagtgcttatatataagcttgcataagcta-tttttatagcaaaagataaaata 16458073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 221 - 333
Target Start/End: Complemental strand, 25461842 - 25461732
Alignment:
Q  221 ttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaa 320  Q
    ||||| || ||||||||||| | |||||| |||| |  ||| |||||||||| | |||| ||||||||||||||| ||| |||||| |||||||||| ||    
T  25461842 ttggataagcagcttatttgtagcttataacacaggctcttctcatgataagtggttatatataagcttgcataagcta-tttttatagcaaaagat-aa 25461745  T
Q  321 atattgttaaatt 333  Q
    |||| ||||||||    
T  25461744 atatcgttaaatt 25461732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 302
Target Start/End: Complemental strand, 26005436 - 26005353
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattt 302  Q
    ||||||| ||||| |||||| | | ||||||||||||   ||||| |||||||  |||||||||||||||||||||| ||||||    
T  26005436 gtttggataaacaacttattagaagcttatagcacaaacacttattatgataattgcttatgtataagcttgcataagctattt 26005353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 288
Target Start/End: Original strand, 39247984 - 39248051
Alignment:
Q  222 tggaaaaacagcttatttgcaactt-atagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    |||| |||||||||||||||| ||| |||||| || ||||||| |||||||||||||||||| |||||    
T  39247984 tggataaacagcttatttgcagctttatagcataattgcttatgatgataagcgcttatgtaaaagct 39248051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 40848639 - 40848705
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataa 285  Q
    ||||||| |||||| | ||||||| ||||||| |||||||||| | ||||||||| |||||||||||    
T  40848639 gtttggataaacagttaatttgcatcttatagtacaagtgcttttaatgataagcacttatgtataa 40848705  T

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Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 260 - 333
Target Start/End: Original strand, 29925754 - 29925826
Alignment:
Q  260 ttatcatgataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattgttaaatt 333  Q
    ||||||| |||| |||||| ||||| |||||||||| |||||||| | ||||||||||||||||  ||||||||    
T  29925754 ttatcataataaacgcttaagtatatgcttgcataagctattttt-atagcaaaagataaaatagcgttaaatt 29925826  T

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Target: chr5; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 234 - 295
Target Start/End: Original strand, 31051785 - 31051846
Alignment:
Q  234 ttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataa 295  Q
    ||||| ||| ||||||||||||||||||||||||||||  | |||| ||||||||| |||||    
T  31051785 ttattcgcagcttatagcacaagtgcttatcatgataaatgattatctataagcttacataa 31051846  T

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Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 304
Target Start/End: Complemental strand, 34907983 - 34907898
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttt 304  Q
    |||||||  |||| |||||||| || |||||||||||||  ||||||||||||  | || |||||| | |||||||||||||||||    
T  34907983 gtttggattaacaacttatttgtaaattatagcacaagtctttatcatgataaaggtttgtgtatatgattgcataaactattttt 34907898  T

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Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 288
Target Start/End: Complemental strand, 10772049 - 10771997
Alignment:
Q  236 atttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||||| ||||||||| |||||||||||||||||| | | ||||||||||||    
T  10772049 atttgcagcttatagcataagtgcttatcatgataaacacatatgtataagct 10771997  T

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Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 273 - 333
Target Start/End: Original strand, 36227721 - 36227780
Alignment:
Q  273 cgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattgttaaatt 333  Q
    ||||||||||||||||||| ||| ||| |||||| ||||||||||||||||  ||||||||    
T  36227721 cgcttatgtataagcttgcttaatcta-tttttatagcaaaagataaaatagcgttaaatt 36227780  T

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Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 269
Target Start/End: Complemental strand, 3569132 - 3569097
Alignment:
Q  234 ttatttgcaacttatagcacaagtgcttatcatgat 269  Q
    ||||||||| ||||||||||||||||||||||||||    
T  3569132 ttatttgcagcttatagcacaagtgcttatcatgat 3569097  T

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Target: chr5; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 270
Target Start/End: Complemental strand, 7706169 - 7706126
Alignment:
Q  227 aaacagcttatttgcaacttatagcacaagtgcttatcatgata 270  Q
    ||||| ||||||||||  ||||||||||||||||||||||||||    
T  7706169 aaacaacttatttgcaggttatagcacaagtgcttatcatgata 7706126  T

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Target: chr5; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 333
Target Start/End: Complemental strand, 42500372 - 42500310
Alignment:
Q  270 aagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattgttaaatt 333  Q
    ||||||| |||||||||||||||||| ||| |||||| | ||||||||||||||  ||||||||    
T  42500372 aagcgctaatgtataagcttgcataagcta-tttttatatcaaaagataaaataaagttaaatt 42500310  T

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Target: chr5; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 330
Target Start/End: Original strand, 7999127 - 7999188
Alignment:
Q  268 ataagcgcttatgtataagcttgcataaactattttttaaagcaaaagataaaatattgttaa 330  Q
    ||||||||||||||||||||||||||||  || ||||||  ||||||| ||||||| ||||||    
T  7999127 ataagcgcttatgtataagcttgcataagtta-tttttatggcaaaaggtaaaataatgttaa 7999188  T

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Target: chr5; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 273
Target Start/End: Original strand, 40426634 - 40426688
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagc 273  Q
    ||||||| ||||| || ||||||| |||||||||||||  |||||||||||||||    
T  40426634 gtttggataaacaactcatttgcagcttatagcacaagcacttatcatgataagc 40426688  T

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Target: chr5; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 288
Target Start/End: Original strand, 42582813 - 42582863
Alignment:
Q  238 ttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||| ||||||||| ||| | ||||||| |||||||||||||||||||||    
T  42582813 ttgcagcttatagcataagcgtttatcataataagcgcttatgtataagct 42582863  T

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Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 20982297 - 20982254
Alignment:
Q  244 cttatagcacaagtgcttatcatgataagcgcttatgtataagct 288  Q
    ||||||||| ||||||||||||| ||||| |||||||||||||||    
T  20982297 cttatagcataagtgcttatcat-ataagtgcttatgtataagct 20982254  T

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Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 39477844 - 39477884
Alignment:
Q  230 cagcttatttgcaacttatagcacaagtgcttatcatgata 270  Q
    ||||||||||||| ||||||| ||||| |||||||||||||    
T  39477844 cagcttatttgcagcttataggacaagcgcttatcatgata 39477884  T

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Target: scaffold0012 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 303
Target Start/End: Complemental strand, 207765 - 207695
Alignment:
Q  233 cttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactatttt 303  Q
    ||||||||||  | ||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  207765 cttatttgcatgtgataccacaagtgcttatcatgataagcacttatgtataagcttgcataagctatttt 207695  T

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Target: scaffold0018 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 304
Target Start/End: Original strand, 157979 - 158064
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtataagcttgcataaactattttt 304  Q
    ||||||| |||||||||||||||| ||||||||||||   ||||| |||||||  ||||||| || ||||| ||||| ||||||||    
T  157979 gtttggataaacagcttatttgcagcttatagcacaaacacttatgatgataattgcttatgcattagcttacataagctattttt 158064  T

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Target: scaffold0050 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 58476 - 58540
Alignment:
Q  219 gtttggaaaaacagcttatttgcaacttatagcacaagtgcttatcatgataagcgcttatgtat 283  Q
    ||||||| ||||| |||||||||| |||| ||||||||||||| |||| |||||| |||||||||    
T  58476 gtttggataaacaacttatttgcagcttagagcacaagtgcttgtcataataagcacttatgtat 58540  T

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