View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4659_low_4 (Length: 402)
Name: NF4659_low_4
Description: NF4659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4659_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 12 - 382
Target Start/End: Complemental strand, 23883475 - 23883105
Alignment:
| Q |
12 |
atgaagctcgatcttatggaaactagccaaattcaaaccttcaaaatctatccaaagttctgccacatacgcgctacttgcccgcaatctcttccaaaag |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23883475 |
atgaagctcgatcttatggaaactagccaaattcaaaccttcaaaatctatccaaagttctgccacatacgcgctgcttgcccgcaatctcttccaaaag |
23883376 |
T |
|
| Q |
112 |
acaccgatcaatttgccattctccccatgcaacactccctcctttatatgtgccatcggtgatcaaacgaatccaaccacttttagggaggctgccagtt |
211 |
Q |
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| T |
23883375 |
acactgatcaatttgccattctccccatgcaacactccctcctttatatgtgccatcggtgatcaaacgaatccaaccacttttagggaggctgccagtt |
23883276 |
T |
|
| Q |
212 |
gatattttccaaaattgtcattgtaatgttttgcatatatagtagcagttttagcactagctgcatggcaattaacaagcttgctaatttccagccaagg |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
23883275 |
gatattttccaaaattgtcattgtaatgttttgcatatatagtagcagttttagcactagctgcatgacaattaacaagcctgctaatttccagccaagg |
23883176 |
T |
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| Q |
312 |
attactaggtgacacaaaatcctcatcatgcatccttctgttcctccaattccacgaagtatgacatgcct |
382 |
Q |
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| T |
23883175 |
attactaggtgacacaaaatcctcatcatgcatccttctgttcctccaattccacgaagtatgacatgcct |
23883105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 12 - 379
Target Start/End: Original strand, 23419834 - 23420190
Alignment:
| Q |
12 |
atgaagctcgatcttatggaaactagccaaattcaaaccttcaaaatctatccaaagttctgccacatacgcgctacttgcccgcaatctcttccaaaag |
111 |
Q |
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| T |
23419834 |
atgaagctcgatcttatggaaaccagccaaattcaaaccttcaaaaactatccaaagttccgccacttacgcgctacttaaccacaatctctccaaaaag |
23419933 |
T |
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| Q |
112 |
acaccgatcaatttgccattctccccatgcaacactccctcctttatatgtgccatcggtgatcaaacgaatccaaccacttttagggaggctgccagtt |
211 |
Q |
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| T |
23419934 |
acacagatccatttgctattctccccatgcaacactccctcctttatatgtgcca-ccgtgatcaaacggatccagcca-------------tgccagtc |
23420019 |
T |
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| Q |
212 |
gatattttccaaaattgtc-------attgtaatgttttgcatatatagtagcagttttagcactagctgcatggcaattaacaagcttgctaatttcca |
304 |
Q |
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| T |
23420020 |
gatattttccaaaattgtcatttgtaattgtagtgttttgc----atggaagcagttttagcaccagccacgagacaattaacaagcctgttaatttcca |
23420115 |
T |
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| Q |
305 |
gccaaggattactaggtgacacaaaatcctcatcatgcatccttctgttcctccaattccacgaagtatgacatg |
379 |
Q |
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| T |
23420116 |
gtcaaggattactaggtgacacaaaatcctcatcatgcatcgttctgttcctccaattccacaacgtatgacatg |
23420190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 305 - 379
Target Start/End: Original strand, 23422273 - 23422347
Alignment:
| Q |
305 |
gccaaggattactaggtgacacaaaatcctcatcatgcatccttctgttcctccaattccacgaagtatgacatg |
379 |
Q |
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|||||||||||||||| ||||||| |||||||||||||||| || ||||||| ||||||||| |||||||||||| |
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| T |
23422273 |
gccaaggattactaggcgacacaatatcctcatcatgcatcattttgttccttcaattccacaaagtatgacatg |
23422347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 36 - 149
Target Start/End: Complemental strand, 23877055 - 23876941
Alignment:
| Q |
36 |
agccaaattcaaaccttcaaaatctatccaaagttctgccacatacgcgctacttgcccgcaatctcttccaaaagacaccgatc-aatttgccattctc |
134 |
Q |
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||||||||| |||||||||||| || | ||||||| |||||||||| ||||| ||| |||||||||| ||||||||| |||| ||| || |||||| |
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| T |
23877055 |
agccaaattaaaaccttcaaaaactcccaaaagttccgccacatacgtgctacacacccccaatctcttcgaaaagacacagatcaaatgtgtcattcta |
23876956 |
T |
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| Q |
135 |
cccatgcaacactcc |
149 |
Q |
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||||||||||||||| |
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| T |
23876955 |
cccatgcaacactcc |
23876941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 138
Target Start/End: Original strand, 23421999 - 23422101
Alignment:
| Q |
36 |
agccaaattcaaaccttcaaaatctatccaaagttctgccacatacgcgctacttgcccgcaatctcttccaaaagacaccgatcaatttgccattctcc |
135 |
Q |
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|||||||||||||||||||||| | | ||||||| ||||||||||| |||| ||| |||||| ||| |||||| || |||| |||||||||||| | |
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| T |
23421999 |
agccaaattcaaaccttcaaaaattcccaaaagttccgccacatacgcactacacacccccaatcttttcgaaaagatacagatccatttgccattcttc |
23422098 |
T |
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| Q |
136 |
cca |
138 |
Q |
| |
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||| |
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| T |
23422099 |
cca |
23422101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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