View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4659_low_6 (Length: 336)

Name: NF4659_low_6
Description: NF4659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4659_low_6
NF4659_low_6
[»] chr3 (4 HSPs)
chr3 (17-193)||(21966567-21966753)
chr3 (17-193)||(21989003-21989189)
chr3 (26-196)||(21966963-21967144)
chr3 (26-196)||(21989399-21989580)
[»] chr2 (2 HSPs)
chr2 (193-321)||(45622387-45622515)
chr2 (159-196)||(3833504-3833541)
[»] chr6 (2 HSPs)
chr6 (26-192)||(20487184-20487361)
chr6 (26-196)||(20481638-20481819)
[»] chr8 (2 HSPs)
chr8 (26-195)||(24860149-24860329)
chr8 (31-192)||(24858944-24859115)
[»] scaffold0625 (1 HSPs)
scaffold0625 (130-196)||(8000-8066)
[»] chr7 (1 HSPs)
chr7 (130-196)||(18993631-18993697)
[»] chr4 (1 HSPs)
chr4 (159-208)||(11384176-11384225)


Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 21966753 - 21966567
Alignment:
Q  17 catcagcgaccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaa 116  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21966753 catcagcgaccataagcgccacatcagcgaccatgtgtgagactta-catttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaa 21966655  T
Q  117 ttaaaggacca-----------aaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcct 193  Q
    |||||||||||           ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21966654 ttaaaggaccaaaatgaaactaaaattaattaaaggaccaaaacgaattttggtaattatttaagggaccaaatatataattaagcct 21966567  T

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Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 21989189 - 21989003
Alignment:
Q  17 catcagcgaccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaa 116  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21989189 catcagcgaccataagcgccacatcagcgaccatgtgtgagactta-catttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaa 21989091  T
Q  117 ttaaaggacca-----------aaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcct 193  Q
    |||||||||||           ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21989090 ttaaaggaccaaaatgaaactaaaattaattaaaggaccaaaacgaattttggtaattatttaagggaccaaatatataattaagcct 21989003  T

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Target: chr3; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 26 - 196
Target Start/End: Original strand, 21966963 - 21967144
Alignment:
Q  26 ccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggac 125  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21966963 ccataagcgccacatcagcgaccatgtgtgagacttaacgtttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggac 21967062  T
Q  126 ca-----------aaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcctaaa 196  Q
    ||           ||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||    
T  21967063 caaaatgaaacttaaattaattaagggaccaaaatgaatattggtaattatttgagggaccagatatataattaagcctaaa 21967144  T

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Target: chr3; HSP #4
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 26 - 196
Target Start/End: Original strand, 21989399 - 21989580
Alignment:
Q  26 ccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggac 125  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21989399 ccataagcgccacatcagcgaccatgtgtgagacttaacgtttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggac 21989498  T
Q  126 ca-----------aaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcctaaa 196  Q
    ||           ||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||    
T  21989499 caaaatgaaacttaaattaattaagggaccaaaatgaatattggtaattatttgagggaccagatatataattaagcctaaa 21989580  T

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Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 193 - 321
Target Start/End: Original strand, 45622387 - 45622515
Alignment:
Q  193 taaatttaacaatatatcaatgactatgacattaattaactgcacttgatcagctttcccattctagatgttgccttggggcagtaccccatgaatccat 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45622387 taaatttaacaatatatcaatgactatgacattaattaactgcacttgatcagctttcccattctagatgttgccttggggcagtaccccatgaatccat 45622486  T
Q  293 gaatttaataacgtggcatacatacatac 321  Q
    |||||||||||||||||||||||||||||    
T  45622487 gaatttaataacgtggcatacatacatac 45622515  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 196
Target Start/End: Complemental strand, 3833541 - 3833504
Alignment:
Q  159 taattatttaagggaccagatatataattaagcctaaa 196  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  3833541 taattatttaagggaccaattatataattaagcctaaa 3833504  T

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Target: chr6 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 26 - 192
Target Start/End: Original strand, 20487184 - 20487361
Alignment:
Q  26 ccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggac 125  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  20487184 ccataagcgccacatcagcgaccatgtgtgagacttaacgtttcttaattaaagtttgacggaaaggacataaacgatggacggatcttaattaaaggac 20487283  T
Q  126 c-----------aaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 192  Q
    |           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20487284 caaaatgagactaaaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 20487361  T

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Target: chr6; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 26 - 196
Target Start/End: Complemental strand, 20481819 - 20481638
Alignment:
Q  26 ccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggac 125  Q
    ||||||||||||||||| | ||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20481819 ccataagcgccacatcagcaaccatgtgtgagacttagcgtttcttaattaaagtttgacggaaaggacataaacgatggacgaatcttaattaaaggac 20481720  T
Q  126 ca-----------aaattaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcctaaa 196  Q
    ||           ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20481719 caaaatgagactaaaattaaataagggaccaaaccgaattttggtaattatttaagggaccagatatataattaagcctaaa 20481638  T

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Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 26 - 195
Target Start/End: Original strand, 24860149 - 24860329
Alignment:
Q  26 ccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggac 125  Q
    ||||||||||||||||| ||||||| ||||||||||||| ||||  ||||||  ||||||||||||| ||||||||||||||| | ||||||||||||||    
T  24860149 ccataagcgccacatcagcgaccatatgtgagacttaacgtttcaaaattaaaatttgacggaaagggcataaacgatggacggagcttaattaaaggac 24860248  T
Q  126 caaaat-----------taattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcctaa 195  Q
    ||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24860249 caaaatgagtctaaaaataattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcctaa 24860329  T

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Target: chr8; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 31 - 192
Target Start/End: Complemental strand, 24859115 - 24858944
Alignment:
Q  31 agcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggaccaaaa 130  Q
    |||||||||||| || |||||||||||||||||||||||||||| ||| ||| |||||||| ||| |||||||||||| | |||||||||||||||||||    
T  24859115 agcgccacatcagcgcccatgtgtgagacttaacatttcttaataaatttttaacggaaagaacaaaaacgatggacggagcttaattaaaggaccaaaa 24859016  T
Q  131 t-----------taattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcc 192  Q
    |           |||||||||||||||||||||||||| ||||||||||| || | |||||||||||||||||    
T  24859015 tgaacctaaaaataattaagggaccaaaacgaattttgataattatttaa-ggcctagatatataattaagcc 24858944  T

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Target: scaffold0625 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0625
Description:

Target: scaffold0625; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 196
Target Start/End: Original strand, 8000 - 8066
Alignment:
Q  130 attaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcctaaa 196  Q
    ||||||||||||||||||  ||| |||  |||||||||||||||||| | || ||||||||||||||    
T  8000 attaattaagggaccaaagtgaaatttcataattatttaagggaccaaagatgtaattaagcctaaa 8066  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 196
Target Start/End: Complemental strand, 18993697 - 18993631
Alignment:
Q  130 attaattaagggaccaaaacgaattttggtaattatttaagggaccagatatataattaagcctaaa 196  Q
    ||||||||||||||||||  ||| |||  |||||||||||||||||| | || ||||||||||||||    
T  18993697 attaattaagggaccaaagtgaaatttcataattatttaagggaccaaagatgtaattaagcctaaa 18993631  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 11384225 - 11384176
Alignment:
Q  159 taattatttaagggaccagatatataattaagcctaaatttaacaatata 208  Q
    ||||||||||||||||||  |||||||||||||||||||| ||| |||||    
T  11384225 taattatttaagggaccatttatataattaagcctaaattaaactatata 11384176  T

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