View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4659_low_7 (Length: 334)
Name: NF4659_low_7
Description: NF4659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4659_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 16 - 324
Target Start/End: Original strand, 49171080 - 49171388
Alignment:
| Q |
16 |
aataatggcgcacccgttgtatgaacagcttctatcagcacacgtgtcgtgtttaagaatcgccacgccggttgaccagttgcccaggatcgatgctcag |
115 |
Q |
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| T |
49171080 |
aataatggcgcacccgttgtatgaacagcttctatcagcacacgtgtcgtgtttaagaatcgccacgccggttgaccagttgcccaggatcgatgctcag |
49171179 |
T |
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| Q |
116 |
ctggcagagtcgcagaatgttgttgccaagtactctgccttaggacaacagggcatgcttgataacgatgataataaacaactcgaccacttcatggtat |
215 |
Q |
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| T |
49171180 |
ctggcagagtcgcagaatgttgttgccaagtactctgccttaggacaacagggcatgcttgataacgatgataataaacaactcgaccacttcatggtat |
49171279 |
T |
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| Q |
216 |
tttacttttctcaataataattacaaaatattgtgannnnnnnnnnnnaaagctttttgcgtgtcaattaatggatggaaatagatttgcaaaattttct |
315 |
Q |
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| T |
49171280 |
tttacttttctcaataataattacaaaatattgtgattttttttttttaaagctttttgcgtgtcaattaatggatggaaattgatttgcaaaattttct |
49171379 |
T |
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| Q |
316 |
gtctctgtg |
324 |
Q |
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||||||||| |
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| T |
49171380 |
gtctctgtg |
49171388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 2746604 - 2746462
Alignment:
| Q |
20 |
atggcgcacccgttgtatgaacagcttctatcagcacacgtgtcgtgtttaagaatcgccacgccggttgaccagttgcccaggatcgatgctcagctgg |
119 |
Q |
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| T |
2746604 |
atggcacatccgttgtatgaacagttgttgtcggcacatgtggcgtgtttgaggatagcaacgccggtggatcagttaccgaggattgatgcacagttag |
2746505 |
T |
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| Q |
120 |
cagagtcgcagaatgttgttgccaagtactctgccttaggaca |
162 |
Q |
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| T |
2746504 |
cacagtctcagaatgtggtggccaaatactctgcttttggaca |
2746462 |
T |
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