View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4659_low_8 (Length: 317)
Name: NF4659_low_8
Description: NF4659
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4659_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 52108936 - 52108649
Alignment:
| Q |
18 |
cgcaaagagaaactcgtttcgcgggtcatcatcttcgattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttccttcaaccg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52108936 |
cgcaaagagaaactcgtttcgcgggtcatcatcttcgattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttccttcaaccg |
52108837 |
T |
|
| Q |
118 |
ttgaagtcatgagggaacgtgttgagtttattcagaaattagggttaacgattgatgatataaatcagtatcctttgattttgggttgtagtgttagaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52108836 |
ttgaagtcatgagggaacgtgttgagtttattcagaaattagggttaacgattgatgatataaatcagtatcctttgattttgggttgtagtgttagaaa |
52108737 |
T |
|
| Q |
218 |
aaacatgattcctgttttagggtatttagaaaaaattgggatttctaggtctaaacttggtgaatttattaagaattatccacaggtt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52108736 |
aaacatgattcctgttttagggtatttagaaaaaattgggatttctaggtctaaacttggtgaatttattaagaattatccacaggtt |
52108649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 305
Target Start/End: Complemental strand, 44520208 - 44519922
Alignment:
| Q |
18 |
cgcaaagagaaactcgtttcgcgggtcatcatcttcgattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttccttcaaccg |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44520208 |
cgcaaagagaaactcgtttcgagggtcatcatcttcgattatctcaagggtttgggaattattcctgatgaattgcaggatttggagcttccttcaaccg |
44520109 |
T |
|
| Q |
118 |
ttgaagtcatgagggaacgtgttgagtttattcagaaattagggttaacgattgatgatataaatcagtatcctttgattttgggttgtagtgttagaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
44520108 |
ttgaagtcatgagggaacgtgttgagtttattcagaaattagggttaacgattgatgatataaatcagtatcctttaattttgggttgtagtgtgagaaa |
44520009 |
T |
|
| Q |
218 |
aaacatgattcctgttttagggtatttagaaaaaattgggatttctaggtctaaacttggtgaatttattaagaattatccacaggtt |
305 |
Q |
| |
|
||||||||||| | |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44520008 |
aaacatgattcgtattttagggtatttataaaaaatt-ggatttctaggtctaaacttggtgaatttattaagaattatccacaggtt |
44519922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University