View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4660-Insertion-10 (Length: 315)
Name: NF4660-Insertion-10
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660-Insertion-10 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 315
Target Start/End: Original strand, 55896646 - 55896943
Alignment:
| Q |
8 |
acaatatgagagggagagatttgtttatttatataaagagttggtgaggtttggttgttgatgtggaatgaggagggcggaagaagaggtaagagaagga |
107 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
55896646 |
acaatatgagagggaga--tttgtttatttatataaagagttggtgaggtttggttgttgatgtggaatgagg---gcggaagaagaggtaagagaagga |
55896740 |
T |
|
| Q |
108 |
agaatatcatacaatttttgaattattagcaaataaacccttgattaataaaattttaagataaaatagtaccactaatcataaaataaaattaatttga |
207 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55896741 |
acaatatcatacaatttttgaattattagcaaataaacccttgattaataaaattttaagataaaatagtaccactaatcataaaataaaattaatttga |
55896840 |
T |
|
| Q |
208 |
-acgtgtcataacactagttgtttgatactaaaaagcatataaagttttcagtagttttttaaattttcgtgattgaatttgataaatgtttgaaaacta |
306 |
Q |
| |
|
| || | || | |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
55896841 |
taagttttattatgttagt------ctactaaaaagcatataaagttttcagtagttttttaaattttagtgattgaatttgataaatgtttgaaaacta |
55896934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 5e-59; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 1028424 - 1028230
Alignment:
| Q |
23 |
gagatttgtttatttatataaagagttggtgaggtttggttgttgatgtggaatgag-gagggcggaagaagaggtaagagaaggaagaatatcatacaa |
121 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
1028424 |
gagatttgtttatttatttaaagagttggtggggtttggttgttgatgtggaatgactgagggcggaagaa-------------------tatcatacaa |
1028344 |
T |
|
| Q |
122 |
tttttgaattattagcaaataaacccttgattaataaaattttaagataaaatagtaccactaatcataaaataaaattaatttgaacgtgtcataa-ca |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1028343 |
tttttgaattattagcaaataaacccttgattaataaaattttaagataaaatagtaccattaatcataaaataaaattaatttgaacgtgtcataacca |
1028244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 1028150 - 1028100
Alignment:
| Q |
264 |
ttttaaattttcgtgattgaatttgataaatgtttgaaaactaatgtactg |
314 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1028150 |
ttttaaattttagtgattgaatttgataaatgtttgaaaactaatgtactg |
1028100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 268
Target Start/End: Complemental strand, 1028207 - 1028177
Alignment:
| Q |
238 |
aaaagcatataaagttttcagtagtttttta |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
1028207 |
aaaagcatataaagttttcagtagtttttta |
1028177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University