View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4660-Insertion-12 (Length: 263)
Name: NF4660-Insertion-12
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660-Insertion-12 |
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| [»] chr3 (8 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 6 - 263
Target Start/End: Complemental strand, 23235691 - 23235434
Alignment:
| Q |
6 |
caagctcctcctacaacttcgatgccttagtaagtccttcaataacctgatttctgatcccaatttcgctaagaaacaccttcgcttatcaaccaccagc |
105 |
Q |
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| T |
23235691 |
caagctcctcctacaacttcgatgccttagtaagtccttcaataacctgatttctgatcccaatttcgctaagaaacaccttcgcttatcaaccaccagc |
23235592 |
T |
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| Q |
106 |
ggcaacctcgtcttaacctactttgatgatactattaataggaagccaacactagtcttttaccggcttcgctccatttttcaccaaagtcgctccattt |
205 |
Q |
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| T |
23235591 |
cgcaacctcatcttaacctactttgatgatactattgataggaagccaacactagtcttttaccggcttcactccatttttcaccgaagtcgctccattt |
23235492 |
T |
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| Q |
206 |
ttaattctgtaacggttaaaccgacccaactacactatcctttttacccactatacag |
263 |
Q |
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|||| ||||||||||||||||| |||||||||||||||| |||| ||||||||||||| |
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| T |
23235491 |
ttaactctgtaacggttaaacccacccaactacactatctttttgacccactatacag |
23235434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 6 - 262
Target Start/End: Complemental strand, 23231799 - 23231543
Alignment:
| Q |
6 |
caagctcctcctacaacttcgatgccttagtaagtccttcaataacctgatttctgatcccaatttcgctaagaaacaccttcgcttatcaaccaccagc |
105 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||| ||| || ||||||||||||||||| |||||||||||||||||||||| |||| || |
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| T |
23231799 |
caagctcctcctacaacttcgatgtctcagtaagtccttcaataccctaatctctgatcccaatttcgcaaagaaacaccttcgcttatcaatcacccgc |
23231700 |
T |
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| Q |
106 |
ggcaacctcgtcttaacctactttgatgatactattaataggaagccaacactagtcttttaccggcttcgctccatttttcaccaaagtcgctccattt |
205 |
Q |
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| T |
23231699 |
cgcaacctcatcttaacctactttgatgatacttatgatatgaagtcaacgctaatcttttaccggcttcactccatttttcacccgcttcgctccattt |
23231600 |
T |
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| Q |
206 |
ttaattctgtaacggttaaaccgacccaactacactatcctttttacccactataca |
262 |
Q |
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| T |
23231599 |
ttaactctgtaacagttaaaccgacccaactacactatccttttgatccactataca |
23231543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 132
Target Start/End: Complemental strand, 23240271 - 23240162
Alignment:
| Q |
23 |
ttcgatgccttagtaagtccttcaataacctgatttctgatcccaatttcgctaagaaacaccttcgcttatcaaccaccagcggcaacctcgtcttaac |
122 |
Q |
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|||||||||| |||||||||||||||| ||| ||||||||||| |||||| |||||||||||||||||||||||||||| | |||||||| ||||||| |
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| T |
23240271 |
ttcgatgcctcagtaagtccttcaataccctaatttctgatccttatttcgttaagaaacaccttcgcttatcaaccacccgaagcaacctcatcttaac |
23240172 |
T |
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| Q |
123 |
ctactttgat |
132 |
Q |
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|||||||||| |
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| T |
23240171 |
ctactttgat |
23240162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 101
Target Start/End: Original strand, 23196249 - 23196339
Alignment:
| Q |
11 |
tcctcctacaacttcgatgccttagtaagtccttcaataacctgatttctgatcccaatttcgctaagaaacaccttcgcttatcaaccac |
101 |
Q |
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| T |
23196249 |
tcctcctacaactacgatgcctcagtaagttcttcaatacccttatttctgatccaaagttcgctaagaaacaccttcgcttatcaaccac |
23196339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 249
Target Start/End: Original strand, 23196401 - 23196478
Alignment:
| Q |
172 |
cttcgctccatttttcaccaaagtcgctccatttttaattctgtaacggttaaaccgacccaactacactatcctttt |
249 |
Q |
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| T |
23196401 |
cttcactccacttttcaccaatgtgattccatttttaactctgtaaccgttaaacctacccaaatacgctatcctttt |
23196478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 74
Target Start/End: Complemental strand, 23226468 - 23226400
Alignment:
| Q |
6 |
caagctcctcctacaacttcgatgccttagtaagtccttcaataacctgatttctgatcccaatttcgc |
74 |
Q |
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|||| ||||| ||||||||||||| || ||| ||||||| |||| ||| ||||||||||||| |||||| |
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| T |
23226468 |
caagatcctcttacaacttcgatgtctcagttagtccttgaatatcctaatttctgatcccactttcgc |
23226400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 7398947 - 7398866
Alignment:
| Q |
7 |
aagctcctcctacaacttcgatgccttagtaagtccttcaataacctgatttctgatcccaatttcgctaagaaacaccttc |
88 |
Q |
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| T |
7398947 |
aagcttctccttcaacttcgatgcctctgtaagttcttcaatacccttatctctgattccaaatttacaaagaaacaccttc |
7398866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 263
Target Start/End: Complemental strand, 23240119 - 23240058
Alignment:
| Q |
202 |
atttttaattctgtaacggttaaaccgacccaactacactatcctttttacccactatacag |
263 |
Q |
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| T |
23240119 |
atttttaactctgcaacagttaaacccatccaactgcactatccttttgacccaatatacag |
23240058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 19118289 - 19118380
Alignment:
| Q |
7 |
aagctcctcctacaacttcgatgccttagtaagtccttcaataacctgatttctgatcccaatttcgctaagaaacaccttcgcttatcaac |
98 |
Q |
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| T |
19118289 |
aagctcctcatacaacttcgatgtcaaagtaagtccctcaataccctaatttccgatcccaaattcgcaaagaaacaccttcgcctatcaac |
19118380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 19125598 - 19125689
Alignment:
| Q |
7 |
aagctcctcctacaacttcgatgccttagtaagtccttcaataacctgatttctgatcccaatttcgctaagaaacaccttcgcttatcaac |
98 |
Q |
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| T |
19125598 |
aagctcctcgtacaacttcgatgtcagagtaagtccctcaataccctaatttctgatcccatcttcgtgaagaaacaccttcgcctatcaac |
19125689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 17367603 - 17367662
Alignment:
| Q |
6 |
caagctcctcctacaacttcgatgccttagtaagtccttcaataacctgatttctgatcc |
65 |
Q |
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| T |
17367603 |
caagctcctcatacaacttcgatgtttaagtaagtctttcaatgacctaatttctgatcc |
17367662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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