View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4660-Insertion-13 (Length: 214)
Name: NF4660-Insertion-13
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660-Insertion-13 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 214
Target Start/End: Original strand, 26721920 - 26722126
Alignment:
| Q |
8 |
ctatctacactttataggttctgcaaatatggttcaaagaagaaaaaccatgagccttggattatgatttgaggttgtaatttgagaaaatggtttaaga |
107 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26721920 |
ctatctacactttataggttctacaaatatggttcaaagaagaaaaaccatgagccttggattatgatttgaggttgtaatttgagaaaatggtttaaga |
26722019 |
T |
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| Q |
108 |
ctctatttgttgtgtaatttccatcaatgctctcagtactcaaaaacaaaactccaattctcataatcacaaaaccaaaaggcatcattccttctcaaat |
207 |
Q |
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| T |
26722020 |
ctctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaactccaattctcataatcacgaaaccaaaaggcatcattccttctcaaat |
26722119 |
T |
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| Q |
208 |
taatttt |
214 |
Q |
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||||||| |
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| T |
26722120 |
taatttt |
26722126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 8 - 214
Target Start/End: Complemental strand, 45116989 - 45116796
Alignment:
| Q |
8 |
ctatctacactttataggttctgcaaatatggttcaaagaagaaaaaccatgagccttggattatgatttgaggttgtaatttgagaaaatggtttaaga |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45116989 |
ctatctacactttataggttctgcaaatatggttcaaagaagaaaaaccatgagccttggattatgatttgag-------------aaaatggtttaaga |
45116903 |
T |
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| Q |
108 |
ctctatttgttgtgtaatttccatcaatgctctcagtactcaaaaacaaaactccaattctcataatcacaaaaccaaaaggcatcattccttctcaaat |
207 |
Q |
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| T |
45116902 |
ctctatttgttgtgtaatttccatcaatgctctcactactcaaagacaaaactccaattctcataatcacgaaaccaaaaggcatcattccttctcaaat |
45116803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 6e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 8 - 214
Target Start/End: Original strand, 2987389 - 2987582
Alignment:
| Q |
8 |
ctatctacactttataggttctgcaaatatggttcaaagaagaaaaaccatgagccttggattatgatttgaggttgtaatttgagaaaatggtttaaga |
107 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
2987389 |
ctatctatactttataggttctgcaaatatggttcaaagaagaaaaaccatgagccttggattatgattt-------------gagaaaatggtttaata |
2987475 |
T |
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| Q |
108 |
ctctatttgttgtgtaatttccatcaatgctctcagtactcaaaaacaaaactccaattctcataatcacaaaaccaaaaggcatcattccttctcaaat |
207 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2987476 |
ctctatttgttgtgtaatttccatcaatgttctcactactcaaagacaaaactccaattctcataatcacgaaaccaaaaggcatcattccttctcaaat |
2987575 |
T |
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