View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4660-Insertion-15 (Length: 230)
Name: NF4660-Insertion-15
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660-Insertion-15 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 28608660 - 28608438
Alignment:
| Q |
8 |
tctctgagtgcttcaaatttattatcaatactttctaactctatctgggatctcgtaagattttgtgttctagattggccactaggcttctccatatgag |
107 |
Q |
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| T |
28608660 |
tctctgagtgcttcaaatttattatcaatactttctaactctatctgggatcttgtaagattttgtgttccagattggccactaggcttctccatatgag |
28608561 |
T |
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| Q |
108 |
aagcaacaactgcaccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtctagtggcattgaaagattcaatgaggct |
207 |
Q |
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| T |
28608560 |
aagcaacaagtgcaccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtctagtggcattgaaagattcaatgaggct |
28608461 |
T |
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| Q |
208 |
aataacccctacagcctgacgag |
230 |
Q |
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| T |
28608460 |
aataacccctacagcttgacgag |
28608438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 38 - 230
Target Start/End: Original strand, 438274 - 438466
Alignment:
| Q |
38 |
ctttctaactctatctgggatctcgtaagattttgtgttctagattggccactaggcttctccatatgagaagcaacaactgcaccatcacgtccaacga |
137 |
Q |
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| T |
438274 |
ctttctaactctagctgggattgtgtaagattttgtgttccagattggccactagatttttccatatgagaagcaacaagggcaccaacacgtccaacga |
438373 |
T |
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| Q |
138 |
gttcaacaaggtaaagtgcaaaaatatgcataggggaaagtctagtggcattgaaagattcaatgaggctaataacccctacagcctgacgag |
230 |
Q |
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| T |
438374 |
tttcaacaaggtaaaggccaaaaacatgtataggggaaattctagtggcattgaaatattcaatgaggctaataactcctacggcctgacgag |
438466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 230
Target Start/End: Complemental strand, 13660025 - 13659809
Alignment:
| Q |
14 |
agtgcttcaaatttattatcaatactttctaactctatctgggatctcgtaagattttgtgttctagattggccactaggcttctccatatgagaagcaa |
113 |
Q |
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|||||||||||| |||||| ||| |||||| ||||| |||||||| ||||||||||| | || || |||| ||||||||| |||||||||| |||| |
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| T |
13660025 |
agtgcttcaaatgtattattaatgctttcttgctctacttgggatcttgtaagattttgcgctccaggttggttactaggcttatccatatgagcggcaa |
13659926 |
T |
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| Q |
114 |
caactgcaccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtctagtggcattgaaagattcaatgaggctaataac |
213 |
Q |
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||| ||||||| |||||| |||||||| |||||||||||| |||| ||| |||||||||| |||||| |||||||||||||||| |||||| ||||| |
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| T |
13659925 |
caagtgcaccagtacgtcctttgagttcaataaggtaaagtgcgaaaacatgtataggggaaattctagtagcattgaaagattcaacgaggctgataac |
13659826 |
T |
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| Q |
214 |
ccctacagcctgacgag |
230 |
Q |
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| T |
13659825 |
ccctgtagcctggcgag |
13659809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 16 - 218
Target Start/End: Complemental strand, 13652523 - 13652321
Alignment:
| Q |
16 |
tgcttcaaatttattatcaatactttctaactctatctgggatctcgtaagattttgtgttctagattggccactaggcttctccatatgagaagcaaca |
115 |
Q |
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|||||||||| |||||| ||| |||||| ||||| |||||| || ||||||||||||| || || ||| |||||||||| |||||||||| ||||||| |
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| T |
13652523 |
tgcttcaaatgtattattaatgctttcttgctctacctgggaactggtaagattttgtgctccaggttgcacactaggcttatccatatgagcagcaaca |
13652424 |
T |
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| Q |
116 |
actgcaccatcacgtccaacgagttcaacaaggtaaagtgcaaaaatatgcataggggaaagtctagtggcattgaaagattcaatgaggctaataaccc |
215 |
Q |
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| T |
13652423 |
agtgcaccggtacgtcctttgagttcaataaggtaaagtgaaaaaacatgtataggggaaattctagtggcattgaaagactgaatgaggttgataaccc |
13652324 |
T |
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| Q |
216 |
cta |
218 |
Q |
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||| |
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| T |
13652323 |
cta |
13652321 |
T |
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