View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4660-Insertion-16 (Length: 193)
Name: NF4660-Insertion-16
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660-Insertion-16 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 34 - 193
Target Start/End: Complemental strand, 12587119 - 12586960
Alignment:
| Q |
34 |
tacaaaattcacatacacaacactactaccataatgaatctcgtacttaatcaaacaaaattaaatattcttcttttacaggtctgtgggcatttatccg |
133 |
Q |
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| T |
12587119 |
tacaaaattcacatacacaacactactaccataatgaatctcgtacttaatcaaacaaaattaaatattcttcttttacaagtctgtgggcatttatccc |
12587020 |
T |
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| Q |
134 |
tacatgttctttctttgagagaggacaaaggacctttttaactatcactcaactaattta |
193 |
Q |
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| T |
12587019 |
tacatgttctttctttgagagaggacaaaggacctttttaactatcactcaactaattta |
12586960 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 42
Target Start/End: Original strand, 51891339 - 51891367
Alignment:
| Q |
14 |
accaaaagagtaattaaacctacaaaatt |
42 |
Q |
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| T |
51891339 |
accaaaagagtaattaaacctacaaaatt |
51891367 |
T |
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