View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4660-Insertion-17 (Length: 122)

Name: NF4660-Insertion-17
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4660-Insertion-17
NF4660-Insertion-17
[»] chr3 (11 HSPs)
chr3 (8-122)||(36002251-36002365)
chr3 (47-103)||(36023375-36023431)
chr3 (46-88)||(23447048-23447090)
chr3 (46-88)||(23478348-23478390)
chr3 (7-88)||(23439668-23439749)
chr3 (12-88)||(23463039-23463115)
chr3 (7-87)||(23472204-23472284)
chr3 (46-86)||(23498829-23498869)
chr3 (46-88)||(23453818-23453860)
chr3 (48-88)||(23386037-23386077)
chr3 (48-88)||(23404408-23404448)
[»] chr2 (2 HSPs)
chr2 (12-118)||(16337668-16337774)
chr2 (19-118)||(16121394-16121493)
[»] chr4 (1 HSPs)
chr4 (24-98)||(12897180-12897254)


Alignment Details
Target: chr3 (Bit Score: 111; Significance: 2e-56; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 2e-56
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 36002365 - 36002251
Alignment:
Q  8 cttctgtgctgaaaatcttgtacaacttagcatgaccaatagcaaacttaaaaagctatgggatggaattcaggtacaaattaattaatgtgtttgtata 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36002365 cttctgtgctgaaaatcttgtacaacttagcatgaccaatagcaaacttaaaaagctatgggatggaattcaggtacaaattaattaatgtgtttatata 36002266  T
Q  108 tacttgttattttta 122  Q
    |||||||||||||||    
T  36002265 tacttgttattttta 36002251  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 4e-17
Query Start/End: Original strand, 47 - 103
Target Start/End: Complemental strand, 36023431 - 36023375
Alignment:
Q  47 tagcaaacttaaaaagctatgggatggaattcaggtacaaattaattaatgtgtttg 103  Q
    |||||| || |||||||| ||||||||||||||||||||||||||||||||||||||    
T  36023431 tagcaagctaaaaaagctttgggatggaattcaggtacaaattaattaatgtgtttg 36023375  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 23447090 - 23447048
Alignment:
Q  46 atagcaaacttaaaaagctatgggatggaattcaggtacaaat 88  Q
    ||||||| ||||||||||||||||||||| |||||||||||||    
T  23447090 atagcaagcttaaaaagctatgggatggagttcaggtacaaat 23447048  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 23478390 - 23478348
Alignment:
Q  46 atagcaaacttaaaaagctatgggatggaattcaggtacaaat 88  Q
    ||||||| ||||||||||||||||||||| |||||||||||||    
T  23478390 atagcaagcttaaaaagctatgggatggagttcaggtacaaat 23478348  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 7 - 88
Target Start/End: Complemental strand, 23439749 - 23439668
Alignment:
Q  7 acttctgtgctgaaaatcttgtacaacttagcatgaccaatagcaaacttaaaaagctatgggatggaattcaggtacaaat 88  Q
    |||| ||||||||||  |||||| | |||||||||||  ||||||| |||||||| || || |||||| |||||||||||||    
T  23439749 acttttgtgctgaaatgcttgtagagcttagcatgactcatagcaagcttaaaaatctctgagatggagttcaggtacaaat 23439668  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 23463115 - 23463039
Alignment:
Q  12 tgtgctgaaaatcttgtacaacttagcatgaccaatagcaaacttaaaaagctatgggatggaattcaggtacaaat 88  Q
    ||||||||||  |||||| | ||| ||||||   ||||||| ||||||||||| ||||||||| |||||||||||||    
T  23463115 tgtgctgaaatgcttgtatatctttgcatgagtcatagcaagcttaaaaagctctgggatggagttcaggtacaaat 23463039  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 87
Target Start/End: Complemental strand, 23472284 - 23472204
Alignment:
Q  7 acttctgtgctgaaaatcttgtacaacttagcatgaccaatagcaaacttaaaaagctatgggatggaattcaggtacaaa 87  Q
    |||| ||||||||||  |||||| | |||  ||||||  ||||||| ||||||||||| ||||||||| ||||||||||||    
T  23472284 acttttgtgctgaaatgcttgtagagcttcacatgactcatagcaagcttaaaaagctctgggatggagttcaggtacaaa 23472204  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 23498869 - 23498829
Alignment:
Q  46 atagcaaacttaaaaagctatgggatggaattcaggtacaa 86  Q
    ||||||| ||||||||||||||||||||| |||||||||||    
T  23498869 atagcaagcttaaaaagctatgggatggagttcaggtacaa 23498829  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 88
Target Start/End: Complemental strand, 23453860 - 23453818
Alignment:
Q  46 atagcaaacttaaaaagctatgggatggaattcaggtacaaat 88  Q
    ||||||| ||||||||||| ||||||||| |||||||||||||    
T  23453860 atagcaagcttaaaaagctctgggatggagttcaggtacaaat 23453818  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 23386077 - 23386037
Alignment:
Q  48 agcaaacttaaaaagctatgggatggaattcaggtacaaat 88  Q
    ||||| ||||||||||| ||||||||| |||||||||||||    
T  23386077 agcaagcttaaaaagctctgggatggagttcaggtacaaat 23386037  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 23404448 - 23404408
Alignment:
Q  48 agcaaacttaaaaagctatgggatggaattcaggtacaaat 88  Q
    ||||| ||||||||||| ||||||||| |||||||||||||    
T  23404448 agcaagcttaaaaagctctgggatggagttcaggtacaaat 23404408  T

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Target: chr2 (Bit Score: 75; Significance: 5e-35; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 5e-35
Query Start/End: Original strand, 12 - 118
Target Start/End: Original strand, 16337668 - 16337774
Alignment:
Q  12 tgtgctgaaaatcttgtacaacttagcatgaccaatagcaaacttaaaaagctatgggatggaattcaggtacaaattaattaatgtgtttgtatatact 111  Q
    |||||| |||| ||||||||||||||||||||| ||||||| |||| |||||| |||||| |||||||||||||||||||||||||||||| ||||||||    
T  16337668 tgtgctcaaaaccttgtacaacttagcatgacccatagcaagcttagaaagctttgggatagaattcaggtacaaattaattaatgtgtttttatatact 16337767  T
Q  112 tgttatt 118  Q
    |||||||    
T  16337768 tgttatt 16337774  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 8e-31
Query Start/End: Original strand, 19 - 118
Target Start/End: Complemental strand, 16121493 - 16121394
Alignment:
Q  19 aaaatcttgtacaacttagcatgaccaatagcaaacttaaaaagctatgggatggaattcaggtacaaattaattaatgtgtttgtatatacttgttatt 118  Q
    |||| |||||| |||||||||||||| ||||||| |||| |||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  16121493 aaaagcttgtagaacttagcatgacccatagcaagcttagaaagctttgggatagaattcaggtacaaattaattaatgtgtttttatatacttgttatt 16121394  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 98
Target Start/End: Original strand, 12897180 - 12897254
Alignment:
Q  24 cttgtacaacttagcatgaccaatagcaaacttaaaaagctatgggatggaattcaggtacaaattaattaatgt 98  Q
    ||||||||||||||||||  | ||||||| ||||||||||| ||| ||| |||||||||||| ||| ||||||||    
T  12897180 cttgtacaacttagcatgcgccatagcaagcttaaaaagctttggaatgaaattcaggtacacatttattaatgt 12897254  T

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