View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4660-Insertion-2 (Length: 1070)

Name: NF4660-Insertion-2
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4660-Insertion-2
NF4660-Insertion-2
[»] chr1 (14 HSPs)
chr1 (8-667)||(9625621-9626276)
chr1 (884-981)||(9626540-9626642)
chr1 (523-629)||(6844417-6844522)
chr1 (521-615)||(43114698-43114790)
chr1 (523-629)||(33674934-33675039)
chr1 (684-737)||(9626336-9626389)
chr1 (523-607)||(17054181-17054264)
chr1 (571-615)||(26271934-26271978)
chr1 (832-875)||(8322538-8322580)
chr1 (832-875)||(31810006-31810048)
chr1 (523-566)||(33241034-33241077)
chr1 (523-589)||(43115031-43115095)
chr1 (525-629)||(6318694-6318800)
chr1 (523-636)||(47795459-47795571)
[»] chr4 (6 HSPs)
chr4 (523-615)||(24739113-24739205)
chr4 (523-629)||(2494110-2494218)
chr4 (523-615)||(19298564-19298655)
chr4 (523-629)||(54175791-54175895)
chr4 (527-565)||(27839059-27839097)
chr4 (527-629)||(41692393-41692494)
[»] chr7 (9 HSPs)
chr7 (523-615)||(5801091-5801182)
chr7 (523-612)||(44434732-44434820)
chr7 (527-629)||(10283333-10283433)
chr7 (523-566)||(24689629-24689672)
chr7 (523-629)||(24688820-24688925)
chr7 (527-615)||(33858043-33858130)
chr7 (523-565)||(4594602-4594644)
chr7 (523-565)||(10282576-10282618)
chr7 (527-615)||(24689299-24689385)
[»] chr6 (8 HSPs)
chr6 (527-615)||(33438624-33438711)
chr6 (832-988)||(842203-842365)
chr6 (527-615)||(26001295-26001382)
chr6 (523-615)||(14094104-14094193)
chr6 (523-608)||(3307396-3307480)
chr6 (884-988)||(20773321-20773430)
chr6 (525-608)||(20469376-20469458)
chr6 (524-655)||(21980864-21980994)
[»] chr5 (16 HSPs)
chr5 (523-615)||(5246469-5246560)
chr5 (523-655)||(35040940-35041071)
chr5 (832-988)||(13375199-13375360)
chr5 (521-615)||(5249303-5249396)
chr5 (523-616)||(20515335-20515426)
chr5 (523-565)||(35781324-35781366)
chr5 (523-608)||(35040460-35040544)
chr5 (523-615)||(35781654-35781744)
chr5 (523-614)||(4727904-4727994)
chr5 (523-566)||(35041395-35041438)
chr5 (833-875)||(9670977-9671018)
chr5 (832-874)||(9672352-9672393)
chr5 (521-608)||(19950690-19950778)
chr5 (527-565)||(25413715-25413753)
chr5 (523-608)||(34383335-34383418)
chr5 (523-565)||(35041615-35041657)
[»] chr3 (10 HSPs)
chr3 (523-607)||(54981654-54981737)
chr3 (523-615)||(11633019-11633111)
chr3 (832-988)||(24613492-24613654)
chr3 (523-629)||(8707974-8708079)
chr3 (523-629)||(9059861-9059966)
chr3 (523-565)||(10333057-10333099)
chr3 (549-615)||(42583574-42583640)
chr3 (523-629)||(54356224-54356330)
chr3 (523-667)||(3942565-3942707)
chr3 (884-988)||(33781373-33781482)
[»] chr8 (12 HSPs)
chr8 (521-615)||(35308184-35308277)
chr8 (527-615)||(6007631-6007718)
chr8 (523-615)||(28828078-28828169)
chr8 (523-629)||(342712-342817)
chr8 (523-565)||(5764836-5764878)
chr8 (523-629)||(6007984-6008089)
chr8 (523-629)||(13916488-13916593)
chr8 (519-565)||(33489437-33489483)
chr8 (457-501)||(339745-339789)
chr8 (523-566)||(1153758-1153801)
chr8 (523-629)||(24981462-24981568)
chr8 (523-607)||(32795339-32795421)
[»] chr2 (5 HSPs)
chr2 (523-565)||(42676421-42676463)
chr2 (523-629)||(40662782-40662886)
chr2 (535-615)||(3256070-3256149)
chr2 (523-629)||(14787156-14787262)
chr2 (523-565)||(31667468-31667510)
[»] scaffold0016 (2 HSPs)
scaffold0016 (523-565)||(106167-106209)
scaffold0016 (523-565)||(205201-205243)


Alignment Details
Target: chr1 (Bit Score: 475; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 8 - 667
Target Start/End: Original strand, 9625621 - 9626276
Alignment:
Q  8 tgatcgatcatgtcgggcaacaaaagtatatatcaatgggggcagttgaatttaatttggcaataacttaacatggatttggactaaaagatcctaagat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9625621 tgatcgatcatgtcgggcaacaaaagtatatatcaatgggggcagttgaatttaatttggcaataacttaacatggatttggactaaaagatcctaagat 9625720  T
Q  108 acttgtttttaggtgaagaatatctaaagannnnnnnnnnngttttg---agaaaaacctaagatatttttcaagtcaacaaaataatataccaaataca 204  Q
    |||||||||||||||||||||||||||||             ||||    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9625721 acttgtttttaggtgaagaatatctaaagtttttttttttttttttttttagaaaaacctaagatatttttcaagtcaacaaaataatataccaaataca 9625820  T
Q  205 ttcttaaaatcaatcaagttgtcattaaacatgttaagttggtatagaattgtatcataatatcctctcgaagacaattagattttaagctcagactttg 304  Q
    ||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9625821 ttcttaaaatcaatcaagttgtcatgaaaca-gttaagttgatatagaattgtatcataatatcctctcgaagacaattagattttaagctcagactttg 9625919  T
Q  305 attcaatggatttgttgaaaccatgattgttgagtgcaaaatacttggttgagttagatctttgttattgacattttggtatagttatgggacaagatgc 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9625920 attcaatggatttgttgaaaccatgattgttgagtgcaaaatacttggttgagttagatctttgttattgacattttggtatagttatgggacaagatgc 9626019  T
Q  405 attgcagtcattctaatagatagattaagcatctaccggttacgaattagattaaaagtgatttgaacatcgtataatttagagattattttttagaaaa 504  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||| ||||||||||||||    ||||||||||     
T  9626020 attgcagtcattctaatagatagattaagcatctactagttacgaattagattaaaagtgatttgagcattgtataatttagaga----tttttagaaac 9626115  T
Q  505 tttttnnnnnnnnttaataatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatata 604  Q
    |||||         ||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||  |||||| ||||||    
T  9626116 ttttttaaaaaa--taataatttattttgtgtttatttatcgtaataaaaattacttttttattttcaaataatttcgtttgtttggaaacaactatata 9626213  T
Q  605 aaagagattttaggttacgaaattacctcaattctttgaaaattattttctgtcttctataaa 667  Q
    |||||||||||| |||||||||||| || |||| ||||||||||||||||||||| |||||||    
T  9626214 aaagagattttatgttacgaaattaacttaattttttgaaaattattttctgtctcctataaa 9626276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 884 - 981
Target Start/End: Original strand, 9626540 - 9626642
Alignment:
Q  884 ctaaaataaactctgtgtctt-ttaaccttttgaaaacggtc-ttgc-gtcagcttctg-caacaaaa-cgctattgtggctaatggagcacaagtggca 978  Q
    ||||||||||| || | |||| |||||||||||||||||||| |||| ||||||||||| |||||||| |||||||||||||||||||||||| |||| |    
T  9626540 ctaaaataaaccctctttcttattaaccttttgaaaacggtcattgccgtcagcttctgtcaacaaaaacgctattgtggctaatggagcacaggtggta 9626639  T
Q  979 ggt 981  Q
    |||    
T  9626640 ggt 9626642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 523 - 629
Target Start/End: Original strand, 6844417 - 6844522
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagattttaggttac 622  Q
    |||||||||||||||| |||| ||||||||||||||||||||| |   |||||||| | ||||||||  |  ||| |||||||||||||||||  |||||    
T  6844417 aatctattttgcgtttgtttaccgtaataaaaatcactttttt-taaacaaataatctagtttgtttggatgcaactatataaaagagattttttgttac 6844515  T
Q  623 gaaatta 629  Q
     ||||||    
T  6844516 aaaatta 6844522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 521 - 615
Target Start/End: Original strand, 43114698 - 43114790
Alignment:
Q  521 ataatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagatttt 615  Q
    ||||||||||||| ||||||||||| |||||||||| |  ||||| |||  ||||||||| ||||||||  | | || |||||||||||||||||    
T  43114698 ataatctattttgtgtttatttatcataataaaaatta--tttttttttataaataatttagtttgtttggatataactatataaaagagatttt 43114790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 523 - 629
Target Start/End: Original strand, 33674934 - 33675039
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagattttaggttac 622  Q
    |||||||||||||||| |||| |||||||||||| |||||||| |   ||||||||||  |||| ||  | |||| |||||||||||||||||  |||||    
T  33674934 aatctattttgcgtttgtttaccgtaataaaaataactttttt-taaacaaataatttaatttgattggatacaactatataaaagagattttttgttac 33675032  T
Q  623 gaaatta 629  Q
     ||||||    
T  33675033 aaaatta 33675039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 684 - 737
Target Start/End: Original strand, 9626336 - 9626389
Alignment:
Q  684 agaaaccattcttaacgacttcttatttgatgttatttttagtgtttctttaga 737  Q
    |||| ||| ||||||| ||||||||||||||||| |||||||| ||||||||||    
T  9626336 agaagccactcttaacaacttcttatttgatgttgtttttagtttttctttaga 9626389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 523 - 607
Target Start/End: Original strand, 17054181 - 17054264
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaa 607  Q
    |||||||||||||||| |||| |||||||||||||||| |||| |   |||||||| | ||||||||| | |||| |||||||||    
T  17054181 aatctattttgcgtttgtttaccgtaataaaaatcactatttt-taaacaaataatctagtttgtttcgatacaactatataaaa 17054264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 571 - 615
Target Start/End: Original strand, 26271934 - 26271978
Alignment:
Q  571 caaataatttcgtttgtttcaaaacaattatataaaagagatttt 615  Q
    |||||||||| ||||||||||| |||| |||||||||||||||||    
T  26271934 caaataatttagtttgtttcaatacaactatataaaagagatttt 26271978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 832 - 875
Target Start/End: Original strand, 8322538 - 8322580
Alignment:
Q  832 ggtccctttaagttcgcgcatttttttgttttcgtccctgtaag 875  Q
    ||||||| |||||||||||||||| |||||||||||||||||||    
T  8322538 ggtccctgtaagttcgcgcatttt-ttgttttcgtccctgtaag 8322580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 832 - 875
Target Start/End: Original strand, 31810006 - 31810048
Alignment:
Q  832 ggtccctttaagttcgcgcatttttttgttttcgtccctgtaag 875  Q
    ||||||| |||||||||||||||| |||||||||||||||||||    
T  31810006 ggtccctgtaagttcgcgcatttt-ttgttttcgtccctgtaag 31810048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 523 - 566
Target Start/End: Original strand, 33241034 - 33241077
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcactttttta 566  Q
    ||||||||||| |||| ||||||||||||||||||| |||||||    
T  33241034 aatctattttgtgtttgtttatcgtaataaaaatcattttttta 33241077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 523 - 589
Target Start/End: Complemental strand, 43115095 - 43115031
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgttt 589  Q
    |||||||||||||||| |||| ||||||| ||||||||||||  |||  ||||||||| ||||||||    
T  43115095 aatctattttgcgtttgtttaccgtaatagaaatcacttttt--tttaaaaataatttagtttgttt 43115031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 525 - 629
Target Start/End: Complemental strand, 6318800 - 6318694
Alignment:
Q  525 tctattttgcgtttatttatcgtaataaaaatcacttttttatt-ttcaaataatttcgtttgtttcaaaacaattatat-aaaagagattttaggttac 622  Q
    |||||||| |||||||||| |||||||||||| |||||||| ||   |||||||||| ||||||||  | ||||   ||| |||||| |||||| |||||    
T  6318800 tctattttacgtttatttaccgtaataaaaataactttttttttaaacaaataatttagtttgttttgatacaaccgtataaaaagaaattttatgttac 6318701  T
Q  623 gaaatta 629  Q
    |||||||    
T  6318700 gaaatta 6318694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 523 - 636
Target Start/End: Complemental strand, 47795571 - 47795459
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagattttaggttac 622  Q
    ||||||||||| |||| |||| |||||||||||||| |||||| |   |||||||| | ||||||||  | || | |||||||||| ||||||  |||||    
T  47795571 aatctattttgtgtttgtttaccgtaataaaaatca-ttttttttaaacaaataatctagtttgttttgatacgactatataaaagggattttttgttac 47795473  T
Q  623 gaaattacctcaat 636  Q
     |||||| ||||||    
T  47795472 aaaattagctcaat 47795459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 4e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 523 - 615
Target Start/End: Complemental strand, 24739205 - 24739113
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagatttt 615  Q
    |||| ||||||||||| |||| | |||||||||||||||||||||   |||||||||| ||||||||  | ||||||||||||||| ||||||    
T  24739205 aatccattttgcgtttgtttaccataataaaaatcacttttttataaacaaataatttagtttgtttggatacaattatataaaagggatttt 24739113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 523 - 629
Target Start/End: Complemental strand, 2494218 - 2494110
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttatttt--caaataatttcgtttgtttcaaaacaattatataaaagagattttaggtt 620  Q
    |||||||||||||||| |||| |||| |||||||||||||||| ||||  |||||||  | ||||||||  | |||| |||||||||||||||||  |||    
T  2494218 aatctattttgcgtttgtttaccgtagtaaaaatcactttttttttttaacaaataacctagtttgtttggatacaactatataaaagagattttttgtt 2494119  T
Q  621 acgaaatta 629  Q
    || ||||||    
T  2494118 acaaaatta 2494110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 523 - 615
Target Start/End: Complemental strand, 19298655 - 19298564
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagatttt 615  Q
    |||||||||||||||| |||| |   ||||||||||||||||| |   |||||||||| |||||||| || |||| |||||||||| ||||||    
T  19298655 aatctattttgcgtttgtttaccacgataaaaatcactttttt-taaacaaataatttagtttgtttgaatacaactatataaaagggatttt 19298564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 523 - 629
Target Start/End: Original strand, 54175791 - 54175895
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagattttaggttac 622  Q
    |||||||||||||||| |||| |||| ||||||||||||||| |  |  ||||||| | ||||||||  | |||| |||||||||| ||||||  |||||    
T  54175791 aatctattttgcgtttttttaccgtactaaaaatcactttttaaaat--aaataatctagtttgtttggatacaactatataaaagggattttttgttac 54175888  T
Q  623 gaaatta 629  Q
     ||||||    
T  54175889 aaaatta 54175895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 527 - 565
Target Start/End: Complemental strand, 27839097 - 27839059
Alignment:
Q  527 tattttgcgtttatttatcgtaataaaaatcactttttt 565  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  27839097 tattttgcgtttgtttaccgtaataaaaatcactttttt 27839059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 527 - 629
Target Start/End: Original strand, 41692393 - 41692494
Alignment:
Q  527 tattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagattttaggttacgaaa 626  Q
    |||||||||||| |||| |||||||||||||| |||||| |   | |||||||| ||||||||  | ||||||||||||||  ||||||  ||||| |||    
T  41692393 tattttgcgtttttttaccgtaataaaaatcattttttt-taaactaataatttagtttgtttggatacaattatataaaaaggattttttgttacaaaa 41692491  T
Q  627 tta 629  Q
    |||    
T  41692492 tta 41692494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 523 - 615
Target Start/End: Complemental strand, 5801182 - 5801091
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagatttt 615  Q
    ||||||||||| |||| |||| ||||||||||||||||||||| |   |||||||||| ||||||||  | |||| |||||||||||||||||    
T  5801182 aatctattttgtgtttgtttaccgtaataaaaatcactttttt-taaacaaataatttagtttgtttggatacaactatataaaagagatttt 5801091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 523 - 612
Target Start/End: Complemental strand, 44434820 - 44434732
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagat 612  Q
    ||||||||||| |||| |||| ||||||||||||||||||||||    |||||||||| ||||||||  | |||| ||||||||||||||    
T  44434820 aatctattttgtgtttgtttaccgtaataaaaatcactttttta-aaacaaataatttagtttgtttggatacaactatataaaagagat 44434732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 527 - 629
Target Start/End: Complemental strand, 10283433 - 10283333
Alignment:
Q  527 tattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagattttaggttacgaaa 626  Q
    |||||||||||  ||||||||||||||||||| |||||||    |||||||||| ||||||||| | |||  |||||||||| ||||||  ||||| |||    
T  10283433 tattttgcgttagtttatcgtaataaaaatcattttttta--aacaaataatttagtttgtttcgatacagctatataaaagggattttttgttacaaaa 10283336  T
Q  627 tta 629  Q
    |||    
T  10283335 tta 10283333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 523 - 566
Target Start/End: Complemental strand, 24689672 - 24689629
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcactttttta 566  Q
    |||||||||| ||||||||||| |||||||||||||||||||||    
T  24689672 aatctattttacgtttatttattgtaataaaaatcactttttta 24689629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 523 - 629
Target Start/End: Complemental strand, 24688925 - 24688820
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagattttaggttac 622  Q
    |||||||||||||||| |||| ||| ||||||||||||||||| |   |||||||||| |||||||  || |||| |||||||||  ||||||  |||||    
T  24688925 aatctattttgcgtttgtttaccgtgataaaaatcactttttt-taaacaaataatttagtttgttcgaatacaactatataaaaatgattttttgttac 24688827  T
Q  623 gaaatta 629  Q
     ||||||    
T  24688826 caaatta 24688820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 527 - 615
Target Start/End: Complemental strand, 33858130 - 33858043
Alignment:
Q  527 tattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagatttt 615  Q
    |||||||| ||| |||||||||||||||||||||| ||| |   |||||||||| |||| |||  | |||| |||||||||||||||||    
T  33858130 tattttgcctttgtttatcgtaataaaaatcacttattt-taaacaaataattttgtttatttggatacaactatataaaagagatttt 33858043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 523 - 565
Target Start/End: Complemental strand, 4594644 - 4594602
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcactttttt 565  Q
    |||||||||||||||| |||| |||||||||||||| ||||||    
T  4594644 aatctattttgcgtttgtttaccgtaataaaaatcaatttttt 4594602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 523 - 565
Target Start/End: Complemental strand, 10282618 - 10282576
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcactttttt 565  Q
    |||||||||| ||||| ||||||||||||||||||||| ||||    
T  10282618 aatctatttttcgtttgtttatcgtaataaaaatcactatttt 10282576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 527 - 615
Target Start/End: Original strand, 24689299 - 24689385
Alignment:
Q  527 tattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagatttt 615  Q
    ||||||||||||  ||| | ||||||||||||||||||||    |||||||| | ||||||||  | |||| |||||||||||||||||    
T  24689299 tattttgcgtttgcttaccctaataaaaatcactttttta--aacaaataatctagtttgtttggatacaactatataaaagagatttt 24689385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 527 - 615
Target Start/End: Original strand, 33438624 - 33438711
Alignment:
Q  527 tattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagatttt 615  Q
    |||||||||||| |||| | ||||||||||||||||||| |   |||||||||| |||||||| || |||| |||||||||||||||||    
T  33438624 tattttgcgtttgtttaccataataaaaatcactttttt-taaacaaataatttagtttgtttgaatacaactatataaaagagatttt 33438711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 832 - 988
Target Start/End: Original strand, 842203 - 842365
Alignment:
Q  832 ggtccctttaagttcgcgcatttttttgttttcgtccctgtaag--nnnnnnnnctaaaataaactctgtgtctt-ttaaccttttgaaaacggt-cttg 927  Q
    ||||||| |||||||||||||||| |||||||||||||||||||          ||||||||||| |||| |||| ||||||||||||||| ||| ||||    
T  842203 ggtccctgtaagttcgcgcatttt-ttgttttcgtccctgtaagttttttttttctaaaataaaccctgtatcttcttaaccttttgaaaatggtccttg 842301  T
Q  928 -cgtcagcttctg-caac-aaaacgctattgtggctaatggagcacaagtggcaggtgatgagt 988  Q
     ||| |||||||| |||| ||||||| | ||||||||| |||||||| |||||| || ||||||    
T  842302 ccgttagcttctgtcaacaaaaacgccactgtggctaacggagcacaggtggcaagttatgagt 842365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 527 - 615
Target Start/End: Complemental strand, 26001382 - 26001295
Alignment:
Q  527 tattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagatttt 615  Q
    |||||||||||| |||||||||||||||||||||| ||| |   |||||||||| |||| |||  | |||| |||||||||||||||||    
T  26001382 tattttgcgtttgtttatcgtaataaaaatcacttattt-taaacaaataatttagtttatttggatacaactatataaaagagatttt 26001295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 523 - 615
Target Start/End: Complemental strand, 14094193 - 14094104
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagatttt 615  Q
    ||||||||||| |||| |||||||||||||||||||| ||||||     ||||||||| ||||||||  | |||| |||||||||| ||||||    
T  14094193 aatctattttgtgtttgtttatcgtaataaaaatcaccttttta---aaaaataatttagtttgtttggatacaactatataaaagcgatttt 14094104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 523 - 608
Target Start/End: Complemental strand, 3307480 - 3307396
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaag 608  Q
    ||||||||||| |||| ||||||||||||||||||||||| |||    |||||||||| ||||||||  | |||| ||||||||||    
T  3307480 aatctattttgtgtttgtttatcgtaataaaaatcactttgtta-aaacaaataatttagtttgtttggatacaactatataaaag 3307396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 884 - 988
Target Start/End: Complemental strand, 20773430 - 20773321
Alignment:
Q  884 ctaaaataaactctgtgtctt-ttaaccttttgaaaacggtc-ttgc-gtcagcttctg-caacaaaac-gctattgtggctaatggagcacaagtggca 978  Q
    |||||||||||  ||| |||| ||||||||||||||| |||| |||| |||| |||||| ||||||||  || |||||||||||||||||||| ||||||    
T  20773430 ctaaaataaaccttgtatcttcttaaccttttgaaaatggtccttgccgtcaccttctgtcaacaaaaatgccattgtggctaatggagcacaggtggca 20773331  T
Q  979 ggtgatgagt 988  Q
    ||| ||||||    
T  20773330 ggtcatgagt 20773321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 525 - 608
Target Start/End: Complemental strand, 20469458 - 20469376
Alignment:
Q  525 tctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaag 608  Q
    |||||||||||||| |||| ||| ||||||||||||||||| |   |||||||||| ||||||||  | |||| ||||||||||    
T  20469458 tctattttgcgtttgtttaccgtgataaaaatcactttttt-taaacaaataatttagtttgtttggatacaactatataaaag 20469376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 524 - 655
Target Start/End: Original strand, 21980864 - 21980994
Alignment:
Q  524 atctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagattttaggttacg 623  Q
    |||||||||| |||| |||| ||||||||||||||||||||| |   |||||||| | ||||||||  | |||| ||||||||||  |||||  |||||     
T  21980864 atctattttgtgtttgtttaccgtaataaaaatcactttttt-taaacaaataatgtagtttgtttggatacaactatataaaaggaattttttgttaca 21980962  T
Q  624 aaattacctcaattctttgaaaattattttct 655  Q
    ||||||  |||||  ||| |||| ||||||||    
T  21980963 aaattagttcaatcttttaaaaaatattttct 21980994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 523 - 615
Target Start/End: Original strand, 5246469 - 5246560
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagatttt 615  Q
    ||||||||||| |||| |||||||||||||||||||||| ||| |   |||||||||| ||||||||  | |||| |||||||||||||||||    
T  5246469 aatctattttgtgtttgtttatcgtaataaaaatcacttattt-taaacaaataatttagtttgtttggatacaactatataaaagagatttt 5246560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 523 - 655
Target Start/End: Original strand, 35040940 - 35041071
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagattttaggttac 622  Q
    |||||||||||||||| |||| ||||||||||||||||||||||    |||||||| | |||||||   | |||| |||||||| ||||||||| |||||    
T  35040940 aatctattttgcgtttgtttaccgtaataaaaatcactttttta-aaacaaataatctagtttgttaggatacaactatataaatgagattttatgttac 35041038  T
Q  623 gaaattacctcaattctttgaaaattattttct 655  Q
     ||||||  |||||  ||| |||| ||||||||    
T  35041039 aaaattagttcaatcttttaaaaaatattttct 35041071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 832 - 988
Target Start/End: Complemental strand, 13375360 - 13375199
Alignment:
Q  832 ggtccctttaagttcgcgcatttttttgttttcgtccctgtaagnnnnnnnnc-taaaataaactctgtgtctt-ttaaccttttgaaaacggtc-ttg- 927  Q
    ||||||| |||||||||||||||||| |||||||||||| ||||        | |||||||||| |||  |||| ||||||||| ||||| |||| |||     
T  13375360 ggtccctgtaagttcgcgcatttttt-gttttcgtccctataagtttttttccctaaaataaaccctgcatcttcttaacctttggaaaatggtcattgt 13375262  T
Q  928 cgtcagcttctg-caacaaaa-cgctattgtggctaatggagcacaagtggcaggtgatgagt 988  Q
    |||||||||||| |||||||| ||| ||||||||||| |||||||| ||||||||| ||||||    
T  13375261 cgtcagcttctgtcaacaaaaacgccattgtggctaacggagcacatgtggcaggtcatgagt 13375199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 521 - 615
Target Start/End: Original strand, 5249303 - 5249396
Alignment:
Q  521 ataatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagatttt 615  Q
    |||||||||||| ||||| |||| |||| |||||||||||||||| |   |||||||||| ||| |||| || |||| |||||||||| ||||||    
T  5249303 ataatctattttacgtttgtttaccgtagtaaaaatcactttttt-taaacaaataatttagttagtttgaatacaactatataaaagggatttt 5249396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 523 - 616
Target Start/End: Complemental strand, 20515426 - 20515335
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagatttta 616  Q
    |||||||||||||||| |||| |||| |||||||||||||||   ||  ||||||||| ||||||||  |||||  |||||||||| |||||||    
T  20515426 aatctattttgcgtttgtttagcgtagtaaaaatcacttttt--attaaaaataatttagtttgtttggaaacagctatataaaagcgatttta 20515335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 523 - 565
Target Start/End: Original strand, 35781324 - 35781366
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcactttttt 565  Q
    |||||||||||||||| |||| |||||||||||||||||||||    
T  35781324 aatctattttgcgtttgtttaccgtaataaaaatcactttttt 35781366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 523 - 608
Target Start/End: Complemental strand, 35040544 - 35040460
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaag 608  Q
    |||||||||||||||| |||| ||||||||||||||| ||||| |   |||||||||| ||||||||  | |||| ||||||||||    
T  35040544 aatctattttgcgtttgtttaccgtaataaaaatcacgttttt-taaacaaataatttagtttgtttggatacaactatataaaag 35040460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 523 - 615
Target Start/End: Complemental strand, 35781744 - 35781654
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagatttt 615  Q
    |||||||||| ||||| |||| ||||| ||||||||||||||||    |||||||||| ||||||||  | |||| |||||||||| ||||||    
T  35781744 aatctattttacgtttgtttaccgtaacaaaaatcactttttta--aacaaataatttagtttgttttgatacaactatataaaagggatttt 35781654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 523 - 614
Target Start/End: Complemental strand, 4727994 - 4727904
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagattt 614  Q
    |||||||||||||||| ||||  |||||||||||||| ||||| |   |||||||| | |||||||| || |||| |||||||||| |||||    
T  4727994 aatctattttgcgtttgtttactgtaataaaaatcaccttttt-taaacaaataatctagtttgtttgaatacaactatataaaagggattt 4727904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 523 - 566
Target Start/End: Complemental strand, 35041438 - 35041395
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcactttttta 566  Q
    |||||||||||||||| ||||  |||||||||||||||||||||    
T  35041438 aatctattttgcgtttgtttactgtaataaaaatcactttttta 35041395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 833 - 875
Target Start/End: Original strand, 9670977 - 9671018
Alignment:
Q  833 gtccctttaagttcgcgcatttttttgttttcgtccctgtaag 875  Q
    |||||| ||||||||||| ||||||||||||||||||||||||    
T  9670977 gtccctctaagttcgcgc-tttttttgttttcgtccctgtaag 9671018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 832 - 874
Target Start/End: Complemental strand, 9672393 - 9672352
Alignment:
Q  832 ggtccctttaagttcgcgcatttttttgttttcgtccctgtaa 874  Q
    ||||||| |||||||||||||||||| ||||||||||||||||    
T  9672393 ggtccctgtaagttcgcgcatttttt-gttttcgtccctgtaa 9672352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 521 - 608
Target Start/End: Original strand, 19950690 - 19950778
Alignment:
Q  521 ataatctattttgcgtttatttatcgtaataaaaatcacttttttatttt--caaataatttcgtttgtttcaaaacaattatataaaag 608  Q
    ||||||||||||| |||| |||||||||| |||||| | |||||| ||||   ||||||||| ||||||||  | |||||||||||||||    
T  19950690 ataatctattttgtgtttgtttatcgtaacaaaaat-attttttttttttaaaaaataatttagtttgtttagatacaattatataaaag 19950778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 527 - 565
Target Start/End: Complemental strand, 25413753 - 25413715
Alignment:
Q  527 tattttgcgtttatttatcgtaataaaaatcactttttt 565  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  25413753 tattttgcgtttgtttatcgtagtaaaaatcactttttt 25413715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 523 - 608
Target Start/End: Original strand, 34383335 - 34383418
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaag 608  Q
    |||||||||||||||| ||||  |||||||||||  ||||||| |||| ||||||||| | ||||||  | |||| ||||||||||    
T  34383335 aatctattttgcgtttgtttagtgtaataaaaat--cttttttttttttaaataatttagattgtttggatacaactatataaaag 34383418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 523 - 565
Target Start/End: Complemental strand, 35041657 - 35041615
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcactttttt 565  Q
    |||||||||||||||| |||| ||| |||||||||||||||||    
T  35041657 aatctattttgcgtttgtttaccgtgataaaaatcactttttt 35041615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 523 - 607
Target Start/End: Complemental strand, 54981737 - 54981654
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaa 607  Q
    |||||||||||||||| |||| ||||||||||||||||||||| |   |||||||||| ||||||||  | ||||||||||||||    
T  54981737 aatctattttgcgtttgtttaccgtaataaaaatcactttttt-taaacaaataatttagtttgttttgatacaattatataaaa 54981654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 523 - 615
Target Start/End: Original strand, 11633019 - 11633111
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagatttt 615  Q
    |||||||||||||||| |||| |||||||||||||| |||||| |    ||||||| | ||||||||  | |||| |||||||||||||||||    
T  11633019 aatctattttgcgtttgtttaccgtaataaaaatcatttttttttaaataaataatctagtttgtttggatacaactatataaaagagatttt 11633111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 832 - 988
Target Start/End: Complemental strand, 24613654 - 24613492
Alignment:
Q  832 ggtccctttaagttcgcgcatttttttgttttcgtccctgtaag--nnnnnnnnctaaaataaactctgtgtctt-ttaaccttttgaaaacggt-cttg 927  Q
    ||||||| |||||||||||||||||| |||||||||||||||||          ||||||||||| || | |||| ||||||||||||||| ||| ||||    
T  24613654 ggtccctgtaagttcgcgcatttttt-gttttcgtccctgtaagttttttttttctaaaataaaccctatatcttcttaaccttttgaaaatggtccttg 24613556  T
Q  928 -cgtcagcttctg-caac-aaaacgctattgtggctaatggagcacaagtggcaggtgatgagt 988  Q
     ||| |||||||| |||| ||||||| | ||||||||| ||||||||||||||| || ||||||    
T  24613555 ccgttagcttctgtcaacaaaaacgccactgtggctaacggagcacaagtggcaagttatgagt 24613492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 523 - 629
Target Start/End: Original strand, 8707974 - 8708079
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagattttaggttac 622  Q
    |||||||||||||||| |||| ||||||||||||||| ||||| |   |||||||| | ||||||||  | |||| ||||||||||| |||||  |||||    
T  8707974 aatctattttgcgtttgtttaccgtaataaaaatcaccttttt-taaacaaataatcttgtttgttttgatacaactatataaaagaaattttttgttac 8708072  T
Q  623 gaaatta 629  Q
     ||||||    
T  8708073 aaaatta 8708079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 523 - 629
Target Start/End: Original strand, 9059861 - 9059966
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagattttaggttac 622  Q
    |||||||||||||||| |||| ||||||||||||||| ||||| |   |||||||| | ||||||||  | |||| ||||||||||| |||||  |||||    
T  9059861 aatctattttgcgtttgtttaccgtaataaaaatcaccttttt-taaacaaataatcttgtttgttttgatacaactatataaaagaaattttttgttac 9059959  T
Q  623 gaaatta 629  Q
     ||||||    
T  9059960 aaaatta 9059966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 523 - 565
Target Start/End: Original strand, 10333057 - 10333099
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcactttttt 565  Q
    |||||||||||||||| |||| |||||||||||||||||||||    
T  10333057 aatctattttgcgtttgtttagcgtaataaaaatcactttttt 10333099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 549 - 615
Target Start/End: Original strand, 42583574 - 42583640
Alignment:
Q  549 ataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagatttt 615  Q
    ||||||||||| ||||| ||  |||||||||| |||||||| || |||| |||||||||||||||||    
T  42583574 ataaaaatcaccttttttttaacaaataatttagtttgtttgaatacaactatataaaagagatttt 42583640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 523 - 629
Target Start/End: Original strand, 54356224 - 54356330
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagattttaggttac 622  Q
    ||||||||||| |||| |||| | ||||||||||||||||||| |   |||||||||| ||||||||  | | || |||||||||| ||||||  |||||    
T  54356224 aatctattttgtgtttgtttaccataataaaaatcacttttttttaaacaaataatttagtttgtttggatataactatataaaagggattttttgttac 54356323  T
Q  623 gaaatta 629  Q
     ||||||    
T  54356324 aaaatta 54356330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 523 - 667
Target Start/End: Complemental strand, 3942707 - 3942565
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagattttaggttac 622  Q
    ||||||||||| |||| |||| ||  ||||||||||||||||| |   |||||||| | |||||||| || |||| |||||||||| ||||||  |||||    
T  3942707 aatctattttgtgtttgtttaccg--ataaaaatcactttttt-taaacaaataatctagtttgtttgaatacaactatataaaagggattttttgttac 3942611  T
Q  623 gaaattacctcaattcttt-gaaaattattttctgtcttctataaa 667  Q
     ||||||  ||||| ||||  |||| |||||||| ||| |||||||    
T  3942610 aaaattagttcaatcctttaaaaaaatattttctctctactataaa 3942565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 884 - 988
Target Start/End: Complemental strand, 33781482 - 33781373
Alignment:
Q  884 ctaaaataaactctgtgtctt-ttaaccttttgaaaacggtc-ttgc-gtcagcttctg-caacaaaa-cgctattgtggctaatggagcacaagtggca 978  Q
    |||||||||||  ||| |||| ||||||||||||||| |||| |||| || |||||||| |||||||| ||| ||||||||||| |||||||| ||||||    
T  33781482 ctaaaataaaccttgtatcttcttaaccttttgaaaatggtccttgccgttagcttctgtcaacaaaaacgccattgtggctaacggagcacatgtggca 33781383  T
Q  979 ggtgatgagt 988  Q
     || ||||||    
T  33781382 agtcatgagt 33781373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 521 - 615
Target Start/End: Complemental strand, 35308277 - 35308184
Alignment:
Q  521 ataatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagatttt 615  Q
    |||||||||||||||||| |||| ||| ||||||||||||||||| |   |||||||||| ||||||||  | |||| |||||||||| ||||||    
T  35308277 ataatctattttgcgtttgtttaccgtgataaaaatcactttttt-taaacaaataatttagtttgtttggatacaactatataaaagggatttt 35308184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 527 - 615
Target Start/End: Original strand, 6007631 - 6007718
Alignment:
Q  527 tattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagatttt 615  Q
    |||||||||||| |||| ||||||||||||||||||||| |   |||||||| | |||||||| || |||| |||||||||| ||||||    
T  6007631 tattttgcgtttgtttaccgtaataaaaatcactttttt-taaacaaataatctagtttgtttgaatacaactatataaaagggatttt 6007718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 523 - 615
Target Start/End: Complemental strand, 28828169 - 28828078
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagatttt 615  Q
    |||||||||||||||| |||| ||||||||||||||||||||| |   ||||||||||  |||||||  | |||| |||||||||| ||||||    
T  28828169 aatctattttgcgtttgtttaccgtaataaaaatcactttttt-taaacaaataatttaatttgtttggatacaactatataaaagggatttt 28828078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 523 - 629
Target Start/End: Complemental strand, 342817 - 342712
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagattttaggttac 622  Q
    |||||||||||| ||| |||| |||||||||||||| ||||||    | ||||||||| ||||||||  | |||| |||||||||||||||||  |||||    
T  342817 aatctattttgcatttgtttaccgtaataaaaatcattttttttaaat-aaataatttagtttgtttggatacaactatataaaagagattttttgttac 342719  T
Q  623 gaaatta 629  Q
     ||||||    
T  342718 aaaatta 342712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 523 - 565
Target Start/End: Original strand, 5764836 - 5764878
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcactttttt 565  Q
    |||||||||||||||| |||| |||||||||||||||||||||    
T  5764836 aatctattttgcgtttgtttaccgtaataaaaatcactttttt 5764878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 523 - 629
Target Start/End: Original strand, 6007984 - 6008089
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagattttaggttac 622  Q
    ||||||||||||||||  ||||||||||||||||||| ||||| |   ||||| || | ||||||||  | ||||||||||||||| ||||||  |||||    
T  6007984 aatctattttgcgtttgcttatcgtaataaaaatcacattttt-taaacaaattatctagtttgtttgcatacaattatataaaagggattttttgttac 6008082  T
Q  623 gaaatta 629  Q
     ||||||    
T  6008083 aaaatta 6008089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 523 - 629
Target Start/End: Original strand, 13916488 - 13916593
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagattttaggttac 622  Q
    |||||||||||||||| |||| | ||||||||||||| ||||| |   |||||||||| ||||||||  | |||| |||||||||| ||||||  |||||    
T  13916488 aatctattttgcgtttgtttaccataataaaaatcacgttttt-taaacaaataatttagtttgtttggatacaactatataaaagggattttttgttac 13916586  T
Q  623 gaaatta 629  Q
     ||||||    
T  13916587 aaaatta 13916593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 519 - 565
Target Start/End: Complemental strand, 33489483 - 33489437
Alignment:
Q  519 taataatctattttgcgtttatttatcgtaataaaaatcactttttt 565  Q
    ||||||||||||||| |||| ||||| ||||||||||||||||||||    
T  33489483 taataatctattttgtgtttgtttattgtaataaaaatcactttttt 33489437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 457 - 501
Target Start/End: Original strand, 339745 - 339789
Alignment:
Q  457 taaaagtgatttgaacatcgtataatttagagattattttttaga 501  Q
    ||||||||||||  |||||| ||||||||||||||||||||||||    
T  339745 taaaagtgattttgacatcgaataatttagagattattttttaga 339789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 523 - 566
Target Start/End: Complemental strand, 1153801 - 1153758
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcactttttta 566  Q
    |||||||||||||||| |||| |||||||||||||| |||||||    
T  1153801 aatctattttgcgtttgtttaccgtaataaaaatcattttttta 1153758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 523 - 629
Target Start/End: Original strand, 24981462 - 24981568
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagattttaggttac 622  Q
    ||||||||||  |||| |||| |||||||||||||| |||||| | |  ||||||||| |||||||| || || | ||| |||||| ||||||  |||||    
T  24981462 aatctattttatgtttttttaccgtaataaaaatcatttttttttatataaataatttagtttgtttgaatacgactatgtaaaagggattttttgttac 24981561  T
Q  623 gaaatta 629  Q
     ||||||    
T  24981562 aaaatta 24981568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 523 - 607
Target Start/End: Original strand, 32795339 - 32795421
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaa 607  Q
    ||||||||||| |||| |||| |||| |||||| ||||||||||  |  ||||||||| |||||||| || |||| |||||||||    
T  32795339 aatctattttgtgtttgtttaccgtagtaaaaaacacttttttaaat--aaataatttagtttgtttgaatacaactatataaaa 32795421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 523 - 565
Target Start/End: Original strand, 42676421 - 42676463
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcactttttt 565  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  42676421 aatctattttgcgtttgtttatcgtaataaaaatcactttttt 42676463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 523 - 629
Target Start/End: Complemental strand, 40662886 - 40662782
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagattttaggttac 622  Q
    ||||||||||| |||| ||||  |||||||||||||||||||||  |  ||||||||| ||||||||  | |||| |||||||||| ||||||  |||||    
T  40662886 aatctattttgtgtttgtttacagtaataaaaatcacttttttaaat--aaataatttagtttgtttggatacaactatataaaagggattttttgttac 40662789  T
Q  623 gaaatta 629  Q
     ||||||    
T  40662788 aaaatta 40662782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 535 - 615
Target Start/End: Original strand, 3256070 - 3256149
Alignment:
Q  535 gtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagatttt 615  Q
    |||| |||| ||||||||||||||||||||| |   |||||||||| ||||||||  | |||| |||||||||||||||||    
T  3256070 gtttgtttaccgtaataaaaatcactttttt-taaacaaataatttagtttgtttgtatacaactatataaaagagatttt 3256149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 523 - 629
Target Start/End: Original strand, 14787156 - 14787262
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcacttttttattttcaaataatttcgtttgtttcaaaacaattatataaaagagattttaggttac 622  Q
    |||||||||||||||| |||| |||||||||||||| ||| || |   |||||||| |  |||||||  | |||| ||| |||||||||||||  |||||    
T  14787156 aatctattttgcgtttgtttaccgtaataaaaatcattttcttttaaacaaataatctaatttgtttggatacaactatctaaaagagattttttgttac 14787255  T
Q  623 gaaatta 629  Q
     ||||||    
T  14787256 aaaatta 14787262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 523 - 565
Target Start/End: Original strand, 31667468 - 31667510
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcactttttt 565  Q
    |||||||||||||||| |||| ||| |||||||||||||||||    
T  31667468 aatctattttgcgtttgtttaccgtgataaaaatcactttttt 31667510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 523 - 565
Target Start/End: Complemental strand, 106209 - 106167
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcactttttt 565  Q
    |||||||||||||||| |||| |||||||||||||||||||||    
T  106209 aatctattttgcgtttgtttaccgtaataaaaatcactttttt 106167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 523 - 565
Target Start/End: Original strand, 205201 - 205243
Alignment:
Q  523 aatctattttgcgtttatttatcgtaataaaaatcactttttt 565  Q
    |||||||||||||||| |||| |||||||||||||| ||||||    
T  205201 aatctattttgcgtttgtttaccgtaataaaaatcattttttt 205243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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