View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4660-Insertion-3 (Length: 867)

Name: NF4660-Insertion-3
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4660-Insertion-3
NF4660-Insertion-3
[»] chr3 (4 HSPs)
chr3 (145-867)||(50552308-50553034)
chr3 (174-254)||(47364734-47364814)
chr3 (591-629)||(35644104-35644142)
chr3 (191-249)||(47354350-47354408)
[»] chr7 (2 HSPs)
chr7 (191-253)||(37697514-37697576)
chr7 (198-254)||(41355653-41355710)
[»] chr5 (2 HSPs)
chr5 (191-254)||(36918407-36918470)
chr5 (193-251)||(7516682-7516740)
[»] chr6 (2 HSPs)
chr6 (166-254)||(2465729-2465817)
chr6 (191-254)||(30006534-30006597)
[»] chr4 (5 HSPs)
chr4 (166-254)||(27128928-27129016)
chr4 (165-245)||(52906320-52906398)
chr4 (179-252)||(2522892-2522966)
chr4 (165-246)||(24933356-24933437)
chr4 (174-239)||(30262893-30262958)
[»] chr8 (3 HSPs)
chr8 (165-212)||(24762885-24762932)
chr8 (191-254)||(41317806-41317869)
chr8 (174-250)||(11535649-11535726)
[»] chr2 (1 HSPs)
chr2 (194-236)||(43482509-43482551)


Alignment Details
Target: chr3 (Bit Score: 616; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 145 - 867
Target Start/End: Complemental strand, 50553034 - 50552308
Alignment:
Q  145 gcgtagcaaataattgtgataagaatgcgttttcaaaaa-taataagaacaatgttttgacattttcaaaatttcttaaaatgctagatttattttcaaa 243  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  50553034 gcgtagcaaataattgtgataagaatgcgttttcaaaaaataataagaacaatgttttgacattttcaaaatttcttaaaatgctagatctattttcaaa 50552935  T
Q  244 aattgtaaaaggaaactatacgaaaactgttggatctatttatttcaannnnnnnnaataaggatctatttacttcatgtttattagttaaagtgaagat 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||        || |||||||||||||||||||||||||||||||||||||||||    
T  50552934 aattgtaaaaggaaactatacgaaaactgttggatctatttatttcaattttttttaagaaggatctatttacttcatgtttattagttaaagtgaagat 50552835  T
Q  344 gataaaagaaaaccttggaaataaaaatgggtccctgtttattttttattttcacaagtatatgtattgcaaaagaaaaactactagaccttcttaa-ta 442  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||    
T  50552834 gataaaagaaaaccttggaaataaaaatgggtccctgtttattttttattttcacaagtatatgtattgctaaagaaaaactacaagaccttcttaaata 50552735  T
Q  443 aagaaggtaaacatcggagatgtttatgagcaaaggtaataaaggacagaaaataaaatagcg--gaccattgatgctggttctaaggttttctctcaat 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  50552734 aagaaggtaaacatcggagatgtttatgagcaaaggtaataaaggacagaaaataaaatagcgcggaccattgatgctggttctaaggttttctctcaat 50552635  T
Q  541 agttttgaagaatagtgaataatttaccccaacatgatgtggcatcaatgaaaattattcacttgtactctactatctatgtcaaacttataaagtattt 640  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  50552634 agttttgaacaatagtgaataatttaccccaacatgatgtggcatcaatgaaaattattcacttgtagtctactatctatgtcaaacttataaagtattt 50552535  T
Q  641 gacaaaattttatatataccttttgttattttgaaatttaacccctctctccctcctctctaacaattgtcatattataagtaaaatatgttggccaata 740  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  50552534 gacaaaattttacatataccttttgttattttgaaatttaacccctctctccctactctctaacaattgtcatattataagtaaaatatgttagccaata 50552435  T
Q  741 aattatatctcgtggataatttttattggtctcacatcatgtgggtaaattatacacaattattcaaatgtaacttaggttgataatgttgtaagttcta 840  Q
    ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||    
T  50552434 aatcatctctcgtggataatttttattggtctcacatcatgtgggtaaattatacacaattctttaaatgtaacttaggttgataatgttctaagttcta 50552335  T
Q  841 aaacttatataaattgattgattggta 867  Q
    ||||| |||||||||||||||||||||    
T  50552334 aaactaatataaattgattgattggta 50552308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 254
Target Start/End: Original strand, 47364734 - 47364814
Alignment:
Q  174 ttttcaaaaataataagaacaatgttttgacattttcaaaatttcttaaaatgctagatttattttcaaaaattgtaaaag 254  Q
    ||||||||||||||   ||||||||||||||||||||| | ||| |  ||||||||||||| |||||||| ||||| ||||    
T  47364734 ttttcaaaaataatttaaacaatgttttgacattttcatagtttttggaaatgctagatttgttttcaaatattgtgaaag 47364814  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 591 - 629
Target Start/End: Original strand, 35644104 - 35644142
Alignment:
Q  591 aaaattattcacttgtactctactatctatgtcaaactt 629  Q
    |||||||||||| ||||||| ||||||||||||||||||    
T  35644104 aaaattattcacatgtactccactatctatgtcaaactt 35644142  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 249
Target Start/End: Complemental strand, 47354408 - 47354350
Alignment:
Q  191 aacaatgttttgacattttcaaaatttcttaaaatgctagatttattttcaaaaattgt 249  Q
    |||||||||||||||||| |||  ||| |||||||| ||||| ||||||| ||||||||    
T  47354408 aacaatgttttgacatttacaattttttttaaaatgttagatctattttcgaaaattgt 47354350  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 37697514 - 37697576
Alignment:
Q  191 aacaatgttttgacattttcaaaatttcttaaaatgctagatttattttcaaaaattgtaaaa 253  Q
    ||||||||||||||||||||||||||||||||| ||||  || |||||| |||||||||||||    
T  37697514 aacaatgttttgacattttcaaaatttcttaaactgctgaatctattttaaaaaattgtaaaa 37697576  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 41355710 - 41355653
Alignment:
Q  198 ttttgacattttcaaaatttcttaaaatgct-agatttattttcaaaaattgtaaaag 254  Q
    ||||| |||||||||||||||| |||||| | |||||| || ||||||||||||||||    
T  41355710 ttttggcattttcaaaatttctaaaaatgttaagatttgttatcaaaaattgtaaaag 41355653  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 36918470 - 36918407
Alignment:
Q  191 aacaatgttttgacattttcaaaatttcttaaaatgctagatttattttcaaaaattgtaaaag 254  Q
    |||||||||||| |||||||||||||||| |||||||  ||| |||||| ||||||||||||||    
T  36918470 aacaatgttttgtcattttcaaaatttctaaaaatgcatgatctattttaaaaaattgtaaaag 36918407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 251
Target Start/End: Complemental strand, 7516740 - 7516682
Alignment:
Q  193 caatgttttgacattttcaaaatttcttaaaatgctagatttattttcaaaaattgtaa 251  Q
    |||||||||| |||||||| | ||||||||||||||| || | ||||||||| ||||||    
T  7516740 caatgttttggcattttcatagtttcttaaaatgctaaatctgttttcaaaatttgtaa 7516682  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 254
Target Start/End: Original strand, 2465729 - 2465817
Alignment:
Q  166 agaatgcgttttcaaaaataataagaacaatgttttgacattttcaaaatttcttaaaatgctagatttattttcaaaaattgtaaaag 254  Q
    |||||||||||||| ||| ||||| ||   |||||| ||||||||||| ||||| ||||||||| |||| ||||| ||| |||||||||    
T  2465729 agaatgcgttttcagaaacaataaaaaacttgtttttacattttcaaattttctgaaaatgctatatttgttttcgaaacttgtaaaag 2465817  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 254
Target Start/End: Original strand, 30006534 - 30006597
Alignment:
Q  191 aacaatgttttgacattttcaaaatttcttaaaatgctagatttattttcaaaaattgtaaaag 254  Q
    |||| ||||||||||  || ||||||| | |||||||||||  |||||||||||||||||||||    
T  30006534 aacagtgttttgacaagttaaaaatttatgaaaatgctagacctattttcaaaaattgtaaaag 30006597  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 254
Target Start/End: Original strand, 27128928 - 27129016
Alignment:
Q  166 agaatgcgttttcaaaaataataagaacaatgttttgacattttcaaaatttcttaaaatgctagatttattttcaaaaattgtaaaag 254  Q
    |||||||||||||| ||| ||||| ||   |||||| ||||||||||| ||||| ||||||||| |||| ||||| ||| |||||||||    
T  27128928 agaatgcgttttcagaaacaataaaaaacttgtttttacattttcaaattttctgaaaatgctatatttgttttcgaaacttgtaaaag 27129016  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 245
Target Start/End: Original strand, 52906320 - 52906398
Alignment:
Q  165 aagaatgcgttttcaaaaataataagaacaatgttttgacattttcaaaatttcttaaaatgctagatttattttcaaaaa 245  Q
    |||||||| |||| | ||| ||||| |||| ||||||||| ||| |||||||||| |||||||||||||| ||||||||||    
T  52906320 aagaatgcattttaataaacaataa-aacagtgttttgaccttt-caaaatttctgaaaatgctagatttgttttcaaaaa 52906398  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 252
Target Start/End: Original strand, 2522892 - 2522966
Alignment:
Q  179 aaaaataataagaacaatgttttgacattttcaaaatttcttaaa-atgctagatttattttcaaaaattgtaaa 252  Q
    |||||||| ||||| | || |||||||||||||| |||||| ||| |||||||||   |||||||||||||||||    
T  2522892 aaaaataacaagaatactgatttgacattttcaatatttctgaaacatgctagatccgttttcaaaaattgtaaa 2522966  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 246
Target Start/End: Original strand, 24933356 - 24933437
Alignment:
Q  165 aagaatgcgttttcaaaaataataagaacaatgttttgacattttcaaaatttcttaaaatgctagatttattttcaaaaat 246  Q
    |||||||| |||||| ||| |||   |||||||||||| ||||||||||||||||  |||||||   |||||||| ||||||    
T  24933356 aagaatgcattttcagaaacaatgtaaacaatgttttggcattttcaaaatttctggaaatgctgagtttattttaaaaaat 24933437  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 30262958 - 30262893
Alignment:
Q  174 ttttcaaaaataataagaacaatgttttgacattttcaaaatttcttaaaatgctagatttatttt 239  Q
    |||||| ||| ||| | ||||||||||  ||||||| |||||||||||||||| ||||| ||||||    
T  30262958 ttttcataaagaatgaaaacaatgtttgaacattttgaaaatttcttaaaatgatagatctatttt 30262893  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 24762885 - 24762932
Alignment:
Q  165 aagaatgcgttttcaaaaataataagaacaatgttttgacattttcaa 212  Q
    |||||||| |||||||| ||||||| |||||||||||| |||||||||    
T  24762885 aagaatgcattttcaaacataataaaaacaatgttttggcattttcaa 24762932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 254
Target Start/End: Complemental strand, 41317869 - 41317806
Alignment:
Q  191 aacaatgttttgacattttcaaaatttcttaaaatgctagatttattttcaaaaattgtaaaag 254  Q
    |||| ||||||||||||||||| |||| ||||| |||| ||||| ||||  |||||||||||||    
T  41317869 aacagtgttttgacattttcaatattttttaaattgcttgatttgtttttgaaaattgtaaaag 41317806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 250
Target Start/End: Original strand, 11535649 - 11535726
Alignment:
Q  174 ttttcaaaaataataagaacaatgttttgacattttcaaaatttct-taaaatgctagatttattttcaaaaattgta 250  Q
    |||||| ||| ||| | |||||||||||| ||||||||||||||||  |||||| ||||| | |||||||| ||||||    
T  11535649 ttttcagaaacaatgacaacaatgttttggcattttcaaaatttctgaaaaatgatagatctgttttcaaatattgta 11535726  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 43482551 - 43482509
Alignment:
Q  194 aatgttttgacattttcaaaatttcttaaaatgctagatttat 236  Q
    |||||||||||||||||||||||||| |||||| || ||||||    
T  43482551 aatgttttgacattttcaaaatttctaaaaatgttatatttat 43482509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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