View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4660-Insertion-4 (Length: 720)
Name: NF4660-Insertion-4
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660-Insertion-4 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 8 - 391
Target Start/End: Original strand, 30208779 - 30209171
Alignment:
| Q |
8 |
atgtgctagaagtctcacatgttaggaaaaacggatgttgaacattttataaattagataaccaataaatgcaatgtcttagtacttttggtaaggccga |
107 |
Q |
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| T |
30208779 |
atgtgctagaagtctcacatgttagggaaaacggatgttgaacattttataaattagataattaataaatgcaatgtcttaatgcttttggtaaggccgg |
30208878 |
T |
|
| Q |
108 |
tccaatatgtttgaaggcctaaaacaaatttttaatgatgcatttaagataaat-aaaaaatcaaattt----------gttgagtctaagagttgaaac |
196 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
30208879 |
tccaatatgtttgaaggcctaatacaaatttttaatgatgcatttaagataaataaaaaaatcaaatttgttgagtctagttgagtctaagagttgaaac |
30208978 |
T |
|
| Q |
197 |
aaatgacatgtaagatatgaggcattatttctaacgagagaaacatttacaattagattatcatattacaaatatttataactaaattnnnnnnnnttaa |
296 |
Q |
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| T |
30208979 |
aaatgacatgtaagatatgaggcattatttctaacgagagaaacatttacaattagattatcatattacaaatatttataactaaattaaaaaaaattaa |
30209078 |
T |
|
| Q |
297 |
gcnnnnnnnnngtcaaaattttgaggcctaaagctctagtttaggttattttgtccttagaccaactatgtttttagttaagatgtggtgatcaa |
391 |
Q |
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| T |
30209079 |
g-attttttttgtcaaaattttgaggcctaaa-ctctagtttagattattttgtccttagaccaactatgtttttagttaagatatggtgatcaa |
30209171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 413 - 720
Target Start/End: Original strand, 30209162 - 30209468
Alignment:
| Q |
413 |
tggtgatcaaccccatttatatcgttggtcttgtccaaggtgaatgataattagaaccccttataacccaacatattggataaaatgagatgcataaaac |
512 |
Q |
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| T |
30209162 |
tggtgatcaacct-atttatatcgttggtattgtttaaggggaatgataactagaaccccttataacccaacatattggataaaatgagatgcataaaac |
30209260 |
T |
|
| Q |
513 |
aaacttacatagtaacaaaactaacttatgcaaattagacaaatgccttggcacatatttaaaccataattttatgactgttactctattgcaagcattc |
612 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
30209261 |
aaacttacatagcaacaaaactaacttatgcaaattagacaaatgccttggcacatatttaaaccataattttatcactgttactctattacaagcattc |
30209360 |
T |
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| Q |
613 |
tttgcttaaagagaggttagtccttggaataaagccaagaacctnnnnnnnggagtactgggttaaagttaaagcacacaaatgacatatccatcacttg |
712 |
Q |
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| T |
30209361 |
tttgcttaaagagaggttagtccttggaataaagccaagaacctaaaaaaaggagtactgggttaaagttaaagcacacaaatgacatatccatcacttg |
30209460 |
T |
|
| Q |
713 |
gccacacc |
720 |
Q |
| |
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|||||||| |
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|
| T |
30209461 |
gccacacc |
30209468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 233 - 266
Target Start/End: Complemental strand, 8040699 - 8040666
Alignment:
| Q |
233 |
agagaaacatttacaattagattatcatattaca |
266 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
8040699 |
agagaaacatttacaattagattatcatattaca |
8040666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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