View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4660-Insertion-5 (Length: 673)
Name: NF4660-Insertion-5
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660-Insertion-5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 592; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 7 - 673
Target Start/End: Original strand, 36157092 - 36157760
Alignment:
| Q |
7 |
aaattcaacacacaaatgaattctagtctgaagagtttgatctctcaagtctgataatcctccgctccatctgcaaattgatcaaagtaatcaaacatat |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36157092 |
aaattcaacacacaaatgaattctagtctgaagagtttgatctctcaagtctgataatcctccgctccatctgcaaattgatcaaagtaatcaaacatat |
36157191 |
T |
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| Q |
107 |
taatatatcatacatgctttggaaactcaagaattgtttccctttcatgcagttagcatctaagatgcattttaaagacctaaaagagttcatgcagcta |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36157192 |
taatatatcatacatgctttggaaactcaagaattgtttccttttcatgcagttagtatctaagatgcattttaaagagctaaaagagttcatgcagcta |
36157291 |
T |
|
| Q |
207 |
tgccctatcatggacatgtcattatcgcttatgatagagggagaaaaatgtaacatacctgaacaaaggtctccaactttctcttggtagtagcaaactg |
306 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36157292 |
cgccctatcatggacatgtcattatcgcttatgttagagggagaaaaatgtaacatacctgaacaaaggtctccaactttctcttggtagtagcaaactg |
36157391 |
T |
|
| Q |
307 |
atgttttacccagagcaatgttagatcaagcctgagcagc-aaaataaacagacaaaagttagatggaaggtatataaaactatcaagatgttaccaaat |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36157392 |
atgttttacccagagcaatgttagatcaagcctgagcagcaaaaataaacagacaaaagttagatggaaggtatataaaactatcaagacgttaccaaat |
36157491 |
T |
|
| Q |
406 |
atagaagatacatactaataaacataaaataaatttatatattctaatacgcgtcaacccactttcttattttattttttcttacaagaaagagcaagaa |
505 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36157492 |
atagaagatacatactaataaatataaaataaatttatatattctaatacgcgtcaacccactttcttattttattttttcttacaagaaagagcaagaa |
36157591 |
T |
|
| Q |
506 |
ctcctgaccatacatgagtgtagataataatttatttgtttcctagaaggtcttgttcagtattcttctacaaaagaagttttaatagatagcagaaata |
605 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36157592 |
ctcctgaccatacatgagtgtagataataatttatttgtttcctagaaggtcttgttcagtattcttctacaaaagaagttttaatagatagcagaaata |
36157691 |
T |
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| Q |
606 |
aacccacaatc--cacagagacaaaagatcaaatcatggacaaattcaggccaggcactta-attattttg |
673 |
Q |
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|| ||||| || || ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
36157692 |
aa-ccacagtcaacagagagacaaaagatcaaatcatggac-aattcaggccaggcacttacattattttg |
36157760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 7 - 596
Target Start/End: Original strand, 36152168 - 36152751
Alignment:
| Q |
7 |
aaattcaaca-cacaaatgaattctagtctgaagagtttgatctctcaagtctgataatcctccgctccatctgcaaattgatcaaagtaatcaaacata |
105 |
Q |
| |
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|||||||||| |||| || || |||||| ||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
36152168 |
aaattcaacagcacagataaactctagtttgaagagttcgatctctcaagtctgataatccttcgttccatctgcaaattgatcaaagtaatcaaacata |
36152267 |
T |
|
| Q |
106 |
ttaatatatcatacatgctttggaaactcaagaattgtttccctttcatgcagttagcatctaagatgcattttaaagacctaaaagagttcatgcagct |
205 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
36152268 |
ttaatatatcata--tgctttggaaactcaagaattgtttccccttcatgcagttagtatctaagatgcattttaaagagctaaaagagttcatgcagct |
36152365 |
T |
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| Q |
206 |
atgccctatcatggacatgtcattatcgcttatgatagagggagaaaaatgtaacatacctgaacaaaggtctccaactttctcttggtagtagcaaact |
305 |
Q |
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||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||| |
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| T |
36152366 |
atgccctatcatggacatgtcgttgtcgcttatgtgagagggagaaaaatgtaacatacctgaacaaaggcctccaactttctcttggtattggcaaact |
36152465 |
T |
|
| Q |
306 |
gatgttttacccagagcaatgttagatcaagcctgagcagcaaaataaacagacaaaagttagatggaaggtatataaaactatcaagatgttaccaaat |
405 |
Q |
| |
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|||||||||||||||||||||| || ||||||||||||||||||||| |||||||| |||||| | |||||||||||| |||||||| ||||||||| |
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| T |
36152466 |
catgttttacccagagcaatgttcgagaaagcctgagcagcaaaataaatagacaaaaattagatcggaggtatataaaattatcaagactttaccaaat |
36152565 |
T |
|
| Q |
406 |
atagaagatacatactaataaacataaaataaatttatatattctaatacgcgtcaacccactttcttattttattttttcttacaagaaagagcaagaa |
505 |
Q |
| |
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|||||||||| |||| |||| || ||||| ||||| ||||||||||||||||||| ||| |||||||||| ||||||||||| |||||||||||||| |
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| T |
36152566 |
atagaagatagatac---taaatatgaaatatatttacatattctaatacgcgtcaatccaatttcttatttaattttttcttaaaagaaagagcaagag |
36152662 |
T |
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| Q |
506 |
ctcctgaccatacatgagtgtagataa-taatttatttgtttcctagaaggtcttgttcagtattcttctacaaaagaagttttaatagata |
596 |
Q |
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||| ||||||||||||||||||||||| || |||||||||||||| ||||| | || ||||||||||||||||||||||| ||||||||| |
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| T |
36152663 |
ctcttgaccatacatgagtgtagataattattttatttgtttcct---aggtcatatttagtattcttctacaaaagaagttgtaatagata |
36152751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 385 - 423
Target Start/End: Complemental strand, 41708338 - 41708300
Alignment:
| Q |
385 |
actatcaagatgttaccaaatatagaagatacatactaa |
423 |
Q |
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|||||||||||||||| ||||||| |||||||||||||| |
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| T |
41708338 |
actatcaagatgttactaaatatataagatacatactaa |
41708300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 418
Target Start/End: Original strand, 25160251 - 25160284
Alignment:
| Q |
385 |
actatcaagatgttaccaaatatagaagatacat |
418 |
Q |
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|||||||||||||||||||||||| ||||||||| |
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| T |
25160251 |
actatcaagatgttaccaaatataaaagatacat |
25160284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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