View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4660-Insertion-6 (Length: 546)
Name: NF4660-Insertion-6
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660-Insertion-6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 8 - 546
Target Start/End: Complemental strand, 51846266 - 51845728
Alignment:
| Q |
8 |
ggtaaagaacgtaatcaggagttttgtatgcaaacattgtttgtgttgcatgacttgagttgattaatggatgaaatgcaaagtcacttaagagtggctc |
107 |
Q |
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| T |
51846266 |
ggtaaagaacgtaatcaggagttttgtatgcaaacattgtttgtgttgcatgacttgagttgattaatggatgaaatgcaaagtcacttaagagtggctc |
51846167 |
T |
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| Q |
108 |
ataattatcggctagaagtatattgcttgatttgaggtttccatgtggcaggtcttcggattcaaattcagtataaagaaatgtcaatccacgtgcaatt |
207 |
Q |
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| T |
51846166 |
ataattatcggctagaagtatattgcttgatttgaggtttccatgtggcaggtcttcggattcaaattcagtataaagaaatgtcaatccacgtgcaatt |
51846067 |
T |
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| Q |
208 |
cctttcactatctttaaacgtgttggccaatttagttcagcatgacttgttcctctatcacctgtacaacaaacattacacatgaatgtgtataaatgac |
307 |
Q |
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| T |
51846066 |
cctttcactatctttaaacgtgttggccaatttagttcagcatgacttgttcctctatcacctgtacaacaaacattacacatgaatgtgtataaatgac |
51845967 |
T |
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| Q |
308 |
tataaaataacacatgaatgcaccaaatttgagatagaacaagctcattaaaggaaaagaaataaaatgtgacagcgttaccatgcaagacatataacaa |
407 |
Q |
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| T |
51845966 |
tataaaataacacatgaatgcaccaaatttgagatagaacaagctcattaaaggaaaagaaataaaatgtgacagcgttaccatgcaagacatataacaa |
51845867 |
T |
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| Q |
408 |
gcttcctttaggcatgtattcagtaacaaataacttctcctccctgcggtaatggtaagccaaaggagccaaaatattacggtttctaagcctcccaaac |
507 |
Q |
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| T |
51845866 |
gcttcctttaggcatgtattcagtaacaaataacttctcctccctgcggtaatggtaagccaaaggagccaaaatattacggtttctaagcctcccaaac |
51845767 |
T |
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| Q |
508 |
cgtctcatctcggcatcaaatatatctctgcttacttta |
546 |
Q |
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| T |
51845766 |
cgtctcatctcggcatcaaatatatctctgcttacttta |
51845728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 386 - 527
Target Start/End: Original strand, 18628238 - 18628379
Alignment:
| Q |
386 |
taccatgcaagacatataacaagcttcctttaggcatgtattcagtaacaaataacttctcctccctgcggtaatggtaagccaaaggagccaaaatatt |
485 |
Q |
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| T |
18628238 |
taccgtgcaagacatataacaagcttcctttaggcttatactcagtaacaaaaagcttttcctctcgacgataatgataagccaaaggagtcaaaatatt |
18628337 |
T |
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| Q |
486 |
acggtttctaagcctcccaaaccgtctcatctcggcatcaaa |
527 |
Q |
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| T |
18628338 |
agcatgtctaatcctcccaaactgtctcatctcagcatcaaa |
18628379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 14 - 152
Target Start/End: Original strand, 18627425 - 18627563
Alignment:
| Q |
14 |
gaacgtaatcaggagttttgtatgcaaacattgtttgtgttgcatgacttgagttgattaatggatgaaatgcaaagtcacttaagagtggctcataatt |
113 |
Q |
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| T |
18627425 |
gaacgtaatccggtgttttgtatgcaaacattgattgcactgcaatgctagggttgattagtggttgaaaagcatagtcacttaaaagaggctcataatc |
18627524 |
T |
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| Q |
114 |
atcggctagaagtatattgcttgatttgaggtttccatg |
152 |
Q |
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| T |
18627525 |
atcagttagtagaacattgcttgatttgaggtttccatg |
18627563 |
T |
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