View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4660-Insertion-7 (Length: 420)

Name: NF4660-Insertion-7
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4660-Insertion-7
NF4660-Insertion-7
[»] chr1 (1 HSPs)
chr1 (8-420)||(26969592-26970004)


Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 8 - 420
Target Start/End: Original strand, 26969592 - 26970004
Alignment:
Q  8 accacgtgattggttggctgatatatctctaacttcaccacctgcaagtcgatcgtcgttgtcgaaaacatggacttctgttgttgggtctcttttgcca 107  Q
    |||||||||||||||||||||||| |||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  26969592 accacgtgattggttggctgatatgtctctaacttcaccacgtgtaagtcgatcgtcattgtcgaaaacatggacttctgttgttgggtcccttttgcca 26969691  T
Q  108 actacggcttctcttgcattctcgtaggtgtcctgaacagccttcatcactgatccaattacaccgggcttctcttgatcatgttgttcttttgttacac 207  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  26969692 actacagcttctcttgcattctcgtaggtgtcatgaacagccttcatcactgaaccaattacaccgggcttctcttgatcatgttgttcttttgtta-ac 26969790  T
Q  208 tgattt-cttcaacgtgtcttggttgttttgatgccatttgaagaagaagaattaatgtagctttagtttttgttgtgtttttcttttctagtaagataa 306  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26969791 tgattttcttcaacgtgtcttggttgttttgatcccatttgaagaagaagaattaatgtagctttagtttttgttgtgtgtttcttttctagtaagataa 26969890  T
Q  307 gattgaaatgaaatgagcttgtttactaagttttgttgtagagtatagaacctatatataagtgacaacttcccatatataaatatacgaattgtgctag 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26969891 gattgaaatgaaatgagcttgtttactaagttttgttgtagagtatagaacctatatataagtgacaacttcccatatataaatatacgaattgtgctag 26969990  T
Q  407 tgctcaaggttata 420  Q
    ||||||||||||||    
T  26969991 tgctcaaggttata 26970004  T

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