View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4660-Insertion-9 (Length: 333)
Name: NF4660-Insertion-9
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660-Insertion-9 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 8 - 195
Target Start/End: Complemental strand, 26602861 - 26602674
Alignment:
| Q |
8 |
agtgtgtgcgtgtgtaaaatctcagttccttgcagttgtacttatggatgcaaaccattatatttacacctcttccttacaactttctagcatttctctt |
107 |
Q |
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| T |
26602861 |
agtgtgtgcgtgtgtaaaatctcagttccttgcagttgtacttatggatgcaaaccattatatttacacctcttccttacaactttgtagcatttctctt |
26602762 |
T |
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| Q |
108 |
ccacttttttagaataaattttataaagtcaatttattcaaaagaaatttttatcattgcaaaataaaaaacacatttaatagtttaa |
195 |
Q |
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| T |
26602761 |
ccacttttttagaataaattttataaagtcaatttattcaaaagaaatttttatcaatgcaaaataaaaaacacatttaatagcttaa |
26602674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 192 - 332
Target Start/End: Complemental strand, 26602438 - 26602291
Alignment:
| Q |
192 |
ttaattcatagaaaccattgtactttgtatttacagcagttggaatgttggatgcaactctagtaatgaaggatatgaagaaggg-------tttctaaa |
284 |
Q |
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| T |
26602438 |
ttaattcatagaaaccattgtactttgtatttacagcagttggaatgttggattcaactccagtaatgaaggatatgaagaatggtttctactttctaag |
26602339 |
T |
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| Q |
285 |
ggaattcttagctgtagattttatttctaggagccaaaattttgtgta |
332 |
Q |
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| T |
26602338 |
ggaattcttagctgtagatattatttctaggaaccaaaattttgtgta |
26602291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 9e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 18746552 - 18746465
Alignment:
| Q |
9 |
gtgtgtgcgtgtgtaaaatctcagttccttgcagttgtacttatggatgcaaaccatta---tatttacacctcttccttacaacttt |
93 |
Q |
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| T |
18746552 |
gtgtgtgcgtgtgtaaaatctcagttccttgcagttgtacttatggaagcaaatcattatattatttacacctcttccttgcaacttt |
18746465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 109 - 207
Target Start/End: Complemental strand, 18746388 - 18746289
Alignment:
| Q |
109 |
cacttttttagaataaattttataaagtc-aatttattcaaaagaaatttttatcattgcaaaataaaaaacacatttaatagtttaattcatagaaacc |
207 |
Q |
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| T |
18746388 |
cacttttttagagtcaattttataaaatttaatttattcaaaagtaatttttatctttgtaaaataaataacacatttaatagcttagttcatagaaacc |
18746289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 9390620 - 9390707
Alignment:
| Q |
9 |
gtgtgtgcgtgtgtaaaatctcagttccttgcagttgtacttatggatgcaaaccatta---tatttacacctcttccttacaacttt |
93 |
Q |
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| T |
9390620 |
gtgtgtgcgtctgtaaaatctcagttccttgcaattgtacttatggaagcaaatcattatattatttacacctcttccttacaacttt |
9390707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 9390336 - 9390423
Alignment:
| Q |
9 |
gtgtgtgcgtgtgtaaaatctcagttccttgcagttgtacttatggatgcaaaccatta---tatttacacctcttccttacaacttt |
93 |
Q |
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||||||| || |||||||||||||||||||||| |||||||||| || |||| ||||| |||||||||||||||||||||||||| |
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| T |
9390336 |
gtgtgtgtgtctgtaaaatctcagttccttgcaattgtacttatagaaacaaatcattatattatttacacctcttccttacaacttt |
9390423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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