View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4660_high_12 (Length: 411)
Name: NF4660_high_12
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 50108709 - 50108360
Alignment:
| Q |
1 |
ggccaccctaagttaacattaccctccacccctgatctcatgtacttcatattgcaaggactgatatggtgaaagactt-gggacttgtacaattgtgtt |
99 |
Q |
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| T |
50108709 |
ggccaccctaagttaacattaccctccacccctgatctcatgtacttcatattgcaaggactgatatggtgaaagactttgggacttgtgcaattgtgtt |
50108610 |
T |
|
| Q |
100 |
aaatgattcacccccaaacaattttggaagctctttctttgataataaacatttaactcttttcaaccaatgttctattcatcctctcggtaacaccact |
199 |
Q |
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| T |
50108609 |
aaatgattcacccccaaacaattttggaagctctttctttgataataaacatttaactcttttcaaccaatgttctattcatcctctcggtaacaccact |
50108510 |
T |
|
| Q |
200 |
caaacatagagacgtataatgtctaatctaattctctctacaataagctttggccaacacactttcatgggccaacttcacgtcatcaaattcatctgaa |
299 |
Q |
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| T |
50108509 |
caaacatagagacgtataatgtctaatctaattctctctacaataagctttggccaacacactttcatgggccaacttcacgtcatcaaattcatctgaa |
50108410 |
T |
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| Q |
300 |
atatataagcagaaattatttctcgtgaaagaggcatgtatggaatgagt |
349 |
Q |
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| T |
50108409 |
atatataagcagaaattatttctcgtgaaagaggcatgtatagaatgagt |
50108360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 353 - 394
Target Start/End: Complemental strand, 50107562 - 50107521
Alignment:
| Q |
353 |
agatacactatcaacaatattaacaaaaccatttgaactctt |
394 |
Q |
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| T |
50107562 |
agatacactatcaacaatattaacaaaaccatttgaactctt |
50107521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 247
Target Start/End: Original strand, 28228766 - 28228970
Alignment:
| Q |
42 |
gtacttcatattgcaaggactgatatggtgaaagacttgggacttgtacaattgtgttaaatgattcacccccaaacaattttggaagctctttctttga |
141 |
Q |
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|||||||||||||||||||| |||||||||| | ||| || ||||||||| | |||| ||||||| |||| |||||||||| | | ||| | |
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| T |
28228766 |
gtacttcatattgcaaggacacgcttggtgaaagattcaagacatgcacaattgtgctcaatgcttcaccctaaaacgattttggaagatttgtctcgaa |
28228865 |
T |
|
| Q |
142 |
taataaacatttaactcttttcaaccaatgttctattcatcctctcggtaacaccactcaaacatagagacgtataatgtctaatctaattctctctaca |
241 |
Q |
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| T |
28228866 |
caaaaagcatttaaccctttcca-ccaatgttatattaatgctctcaacaacaccatttaaacatagagacatctgatgtctaatccaattctctctaca |
28228964 |
T |
|
| Q |
242 |
ataagc |
247 |
Q |
| |
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|||||| |
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|
| T |
28228965 |
ataagc |
28228970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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