View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4660_high_14 (Length: 359)
Name: NF4660_high_14
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660_high_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 9 - 337
Target Start/End: Complemental strand, 29868470 - 29868143
Alignment:
| Q |
9 |
gataggtagttaatcatcacaaccagttatagaaagcttaactatatattttcatatatgagttggacaaaattcgtaggcattagtcatttactagttg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
29868470 |
gataggtagttaatcatcacaaccagttatagaaagcttaactatatattttcatatatgagttggacgaaactcgtaggcattagtcatttactagttg |
29868371 |
T |
|
| Q |
109 |
ctatatatacattacatcaaattaattaagacaaacaatgattatgtgagaaaagaaattattatttaaatcttttgacatctttaaagcaaagatttat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29868370 |
ctatatatacattacatcaaattaattaagacaaacaatgattatgtgagaaaaaaaattattatttaaatcttttgacatctttaaagcaaagatttat |
29868271 |
T |
|
| Q |
209 |
tnnnnnnnnnntccttaaagcaaaggtcctagcaatatgggatatggctcccaagctggctgtggagcagagtgcaaggctggtaagggaaggtctaaaa |
308 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29868270 |
t-aaaaaaaaatccttaaagcaaaggtcctagcaatatgggatatggctcccaagctggctgtggagcagagtgcaaggctggtaagggaaggtctaaaa |
29868172 |
T |
|
| Q |
309 |
ctctatcatatcatgaatatggggacatg |
337 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
29868171 |
ctctatcatatcatgaatatggggacatg |
29868143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University