View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4660_high_16 (Length: 334)
Name: NF4660_high_16
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 175 - 316
Target Start/End: Complemental strand, 8043819 - 8043688
Alignment:
| Q |
175 |
tcattgaatcttccagacacaaaaaatatcatgaataaaaattgaatagaagcaatttccttcattttgttcttccattgaaactcaattatgtacattg |
274 |
Q |
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| T |
8043819 |
tcattgaatcttccacacacaaaaaatatcat----------tgaatagaaacaatttccttcattttgttctaccattgaaactcaaatatgtacattg |
8043730 |
T |
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| Q |
275 |
aaattggaaaatagatagttcattggcagaaaataaataaat |
316 |
Q |
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| T |
8043729 |
aaattgaaaaatagatagttcattggcagaaaataaacaaat |
8043688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 254 - 316
Target Start/End: Complemental strand, 8033814 - 8033752
Alignment:
| Q |
254 |
gaaactcaattatgtacattgaaattggaaaatagatagttcattggcagaaaataaataaat |
316 |
Q |
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| T |
8033814 |
gaaactcagttatgtacattgaaattggaaaatagatagttcattggcagaaaataaataaat |
8033752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 7969749 - 7969817
Alignment:
| Q |
17 |
atgaacatcttcaacaaaattacaaaacctagctc----atataatgtatctgtagcttaatttctcat |
81 |
Q |
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| T |
7969749 |
atgaacatcttcaacaaaattacaaaacctagctcatatatataatgtatctgtagcttaatttctcat |
7969817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 8034031 - 8033963
Alignment:
| Q |
17 |
atgaacatcttcaacaaaattacaaaacctagctca----tataatgtatctgtagcttaatttctcat |
81 |
Q |
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| T |
8034031 |
atgaacatcttcaacaaaattacaaaacctagctcatatatataatgtatctgtagcttaatttctcat |
8033963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 254 - 309
Target Start/End: Original strand, 7969970 - 7970025
Alignment:
| Q |
254 |
gaaactcaattatgtacattgaaattggaaaatagatagttcattggcagaaaata |
309 |
Q |
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|||||||| |||||| |||||||||||||||||||||||||||||| ||||||||| |
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| T |
7969970 |
gaaactcagttatgtgcattgaaattggaaaatagatagttcattgccagaaaata |
7970025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 76
Target Start/End: Complemental strand, 8043995 - 8043948
Alignment:
| Q |
29 |
aacaaaattacaaaacctagctcatataatgtatctgtagcttaattt |
76 |
Q |
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| T |
8043995 |
aacaaaattataaaacctaactcatattatgtatctgtagtttaattt |
8043948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 175 - 312
Target Start/End: Original strand, 41380375 - 41380501
Alignment:
| Q |
175 |
tcattgaatcttccagacacaaaaaatatcatgaataaaaattgaatagaagcaatttccttcattttgttcttccattgaaactcaattatgtacattg |
274 |
Q |
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||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
41380375 |
tcattgaatcttccacacacaaaaaatatcat----------tgaatacaagcaatttccttcattt-gttcttcaattgaaactcaattatgtacattg |
41380463 |
T |
|
| Q |
275 |
aaattggaaaatagatagttcattggcagaaaataaat |
312 |
Q |
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|||||||||||||||||||| |||||||| |||||||| |
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| T |
41380464 |
aaattggaaaatagatagtttattggcagcaaataaat |
41380501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 41380191 - 41380308
Alignment:
| Q |
21 |
acatcttcaacaaaattacaaaacctagctcatataatgtatctgtagcttaa-tttctcatcnnnnnnnaatactttctatgttttgtatttcaatcaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| | |||||||| |||||||| |||| |||| |
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| T |
41380191 |
acatcttcaacaaaattacaaaacctagctcatataatgtatctgtagtttaattttctcatccattttt-acactttctaagttttgtacttcattcaa |
41380289 |
T |
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| Q |
120 |
gcatctattaatagatgcta |
139 |
Q |
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||||||||| |||||||||| |
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| T |
41380290 |
gcatctatt-atagatgcta |
41380308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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