View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4660_high_17 (Length: 326)

Name: NF4660_high_17
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4660_high_17
NF4660_high_17
[»] chr7 (2 HSPs)
chr7 (26-180)||(6003422-6003580)
chr7 (81-180)||(2570423-2570522)
[»] chr4 (5 HSPs)
chr4 (23-180)||(26500150-26500311)
chr4 (24-180)||(1799192-1799359)
chr4 (23-116)||(10388606-10388703)
chr4 (140-180)||(6760858-6760898)
chr4 (83-116)||(17416448-17416481)
[»] chr1 (3 HSPs)
chr1 (23-176)||(4397349-4397506)
chr1 (23-176)||(38709997-38710154)
chr1 (23-180)||(4391652-4391814)
[»] chr8 (4 HSPs)
chr8 (24-180)||(38387964-38388124)
chr8 (23-180)||(46101-46262)
chr8 (51-170)||(4489610-4489733)
chr8 (83-126)||(22915941-22915984)
[»] chr3 (4 HSPs)
chr3 (23-178)||(17324034-17324193)
chr3 (26-180)||(45181642-45181800)
chr3 (23-180)||(16285111-16285272)
chr3 (80-180)||(23087617-23087717)
[»] chr5 (10 HSPs)
chr5 (23-180)||(25362318-25362479)
chr5 (23-180)||(35847143-35847304)
chr5 (23-180)||(39368907-39369067)
chr5 (23-180)||(42742213-42742372)
chr5 (81-180)||(17218822-17218921)
chr5 (23-180)||(3204328-3204488)
chr5 (23-180)||(29685871-29686032)
chr5 (80-180)||(2707167-2707267)
chr5 (51-173)||(2334625-2334752)
chr5 (145-180)||(1223089-1223124)
[»] chr2 (3 HSPs)
chr2 (28-176)||(37128802-37128954)
chr2 (26-180)||(41958280-41958438)
chr2 (23-116)||(4397369-4397466)


Alignment Details
Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 26 - 180
Target Start/End: Original strand, 6003422 - 6003580
Alignment:
Q  26 agcaagtttgtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaacatca 121  Q
    ||||| |||||||||||||| ||| |||||| |||||||||| ||||    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6003422 agcaaatttgtgtctcaggtccttttaggctgttgtgatgtcgcctccgatagactgaaacttgagtggtggtcgaagctgaacgtttgaagcaacatca 6003521  T
Q  122 ctatcaggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtta 180  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6003522 atatcaggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtta 6003580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 81 - 180
Target Start/End: Original strand, 2570423 - 2570522
Alignment:
Q  81 acttgagtggtggtcgaagctgaacgtttgaagcaacatcactatcaggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtta 180  Q
    ||||||||||||||||||||||||| |||||||||| |||||| || ||||||||||| |||||||||||||||||||||||||||||| | ||||||||    
T  2570423 acttgagtggtggtcgaagctgaacctttgaagcaaaatcactttcgggtgcctttttgatcactgttggcggtgttggttctttgaggtgttgttgtta 2570522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 180
Target Start/End: Complemental strand, 26500311 - 26500150
Alignment:
Q  23 gggagcaagtttgtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaaca 118  Q
    ||||||||||||||| |||| || ||| |||||| |||||||||||||||    |||| | ||||||||||||||||||||||||||||||||||||| |    
T  26500311 gggagcaagtttgtgactcaagtccttttaggctgttgtgatgtctcctccgatagaccggaacttgagtggtggtcgaagctgaacgtttgaagcaaaa 26500212  T
Q  119 tcactatcaggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtta 180  Q
    ||| |||| ||||| || || | ||||||||| |||||||||||||||||||||||||||||    
T  26500211 tcaatatcgggtgctttattcaccactgttggtggtgttggttctttgaggagctgttgtta 26500150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 24 - 180
Target Start/End: Original strand, 1799192 - 1799359
Alignment:
Q  24 ggagcaagtttgtgtctcaggttcttctaggctattgtgatgtctcctcaga----ctgaaacttgagtggtggtcgaagctgaacgtttgaagcaacat 119  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||| ||    |  ||| ||||||||||||||||||||| |||||||||||||||    
T  1799192 ggagcaagtttgtgtctcaggtccttttaggctattgtgatgtctcctccgataaaccaaaatttgagtggtggtcgaagctgatcgtttgaagcaacat 1799291  T
Q  120 cactatcaggtgccttttttatcactgtt-------ggcggtgttggttctttgaggagctgttgtta 180  Q
    || |||| ||||||||||| |||||||||       ||| ||||||||||||||||||||||||||||    
T  1799292 cattatcgggtgcctttttgatcactgttggcagacggcagtgttggttctttgaggagctgttgtta 1799359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 116
Target Start/End: Original strand, 10388606 - 10388703
Alignment:
Q  23 gggagcaagtttgtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaa 116  Q
    |||||||||||| || ||||||| ||| |||||| |||||||||||||||    |||| | | |||||||||||||||||||| ||||||||||||||    
T  10388606 gggagcaagtttatgactcaggtccttttaggctgttgtgatgtctcctctgatagaccggatcttgagtggtggtcgaagctaaacgtttgaagcaa 10388703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 6760858 - 6760898
Alignment:
Q  140 atcactgttggcggtgttggttctttgaggagctgttgtta 180  Q
    |||||||||||||||||||||||||||| ||||| ||||||    
T  6760858 atcactgttggcggtgttggttctttgatgagctattgtta 6760898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 17416481 - 17416448
Alignment:
Q  83 ttgagtggtggtcgaagctgaacgtttgaagcaa 116  Q
    |||||||||||||||||||||| |||||||||||    
T  17416481 ttgagtggtggtcgaagctgaatgtttgaagcaa 17416448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 4397506 - 4397349
Alignment:
Q  23 gggagcaagtttgtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaaca 118  Q
    ||||| ||||||||| ||||||| ||| |||||| |||||||||||||||    |||| | | ||||||||||||||||||||||||||||||||||| |    
T  4397506 gggagtaagtttgtgactcaggtccttttaggctgttgtgatgtctcctccgatagaccggatcttgagtggtggtcgaagctgaacgtttgaagcaaaa 4397407  T
Q  119 tcactatcaggtgccttttttatcactgttggcggtgttggttctttgaggagctgtt 176  Q
    |||||||| |||||||  || |||| ||||||||||||||||||||||||||| ||||    
T  4397406 tcactatcgggtgcctaattgatcattgttggcggtgttggttctttgaggagttgtt 4397349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 176
Target Start/End: Original strand, 38709997 - 38710154
Alignment:
Q  23 gggagcaagtttgtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaaca 118  Q
    ||||||||||||||| ||||||| ||| |||| | |||||||||||||||    |||| | ||||||||||||||||||||||||||| ||||||||| |    
T  38709997 gggagcaagtttgtgactcaggtccttttaggatgttgtgatgtctcctccgatagaccggaacttgagtggtggtcgaagctgaacgcttgaagcaaaa 38710096  T
Q  119 tcactatcaggtgccttttttatcactgttggcggtgttggttctttgaggagctgtt 176  Q
    |||| ||  ||||||   || ||||||||||||||||||||||||||||||| |||||    
T  38710097 tcaccattgggtgccaaattgatcactgttggcggtgttggttctttgaggaactgtt 38710154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 23 - 180
Target Start/End: Original strand, 4391652 - 4391814
Alignment:
Q  23 gggagcaagttt-gtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgt-ttgaagcaa 116  Q
    |||||||||||| ||| ||||||| ||| |||||| |||||||||||||||    |||| | |||||||||||||||||||| ||| | | |||||||||    
T  4391652 gggagcaagttttgtgactcaggt-cttttaggctgttgtgatgtctcctccgatagacaggaacttgagtggtggtcgaagttgagcatcttgaagcaa 4391750  T
Q  117 catcactatcaggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtta 180  Q
     |||  ||||| |||| |  |||  ||||||||| |||||||||||||||||||||| ||||||    
T  4391751 aatctttatcatgtgcttgattttccactgttggtggtgttggttctttgaggagcttttgtta 4391814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 24 - 180
Target Start/End: Original strand, 38387964 - 38388124
Alignment:
Q  24 ggagcaagtttgtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaacat 119  Q
    |||||||||||||| ||||||| ||| ||||||||||||||||||| ||    |||||   |||||||||||||||||||||||||||||||||||| ||    
T  38387964 ggagcaagtttgtgactcaggtccttttaggctattgtgatgtctcatctgatagactaggacttgagtggtggtcgaagctgaacgtttgaagcaaaat 38388063  T
Q  120 cactatcaggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtta 180  Q
    ||||||| |||||||  || ||||||||||  ||||||||||||| |||||| ||||||||    
T  38388064 cactatcgggtgcctaattgatcactgttgatggtgttggttcttcgaggagttgttgtta 38388124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 180
Target Start/End: Complemental strand, 46262 - 46101
Alignment:
Q  23 gggagcaagtttgtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaaca 118  Q
    |||||||||||| || ||||||| ||| |||| | |||||||||||||||    |||||| |||||||||||||||| ||| |||||||||||||||| |    
T  46262 gggagcaagtttctgactcaggtccttttaggttgttgtgatgtctcctccgatagactggaacttgagtggtggtcaaagttgaacgtttgaagcaaaa 46163  T
Q  119 tcactatcaggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtta 180  Q
    ||||||||||| | |   || |||| ||||| | ||||||||||||||||||| ||||||||    
T  46162 tcactatcaggcgtcgaattgatcattgttgacagtgttggttctttgaggagttgttgtta 46101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 51 - 170
Target Start/End: Complemental strand, 4489733 - 4489610
Alignment:
Q  51 taggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaacatcactatcaggtgccttttttatcactg 146  Q
    |||||| |||||||||||||||    |||||| ||||||||||||||| |||||| |||||||||||||| |||| ||||  |||| |  |||| ||||     
T  4489733 taggcttttgtgatgtctcctccgatagactggaacttgagtggtggtagaagctaaacgtttgaagcaaaatcattatcgagtgcttaatttaacacta 4489634  T
Q  147 ttggcggtgttggttctttgagga 170  Q
    |||| |||||||||||||||||||    
T  4489633 ttggtggtgttggttctttgagga 4489610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 83 - 126
Target Start/End: Original strand, 22915941 - 22915984
Alignment:
Q  83 ttgagtggtggtcgaagctgaacgtttgaagcaacatcactatc 126  Q
    ||||||||| ||||||||||||||||||||||||  ||||||||    
T  22915941 ttgagtggtagtcgaagctgaacgtttgaagcaaattcactatc 22915984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 23 - 178
Target Start/End: Complemental strand, 17324193 - 17324034
Alignment:
Q  23 gggagcaagtttgtgtctcaggttcttctaggctattgtgatgtctcctcaga----ctgaaacttgagtggtggtcgaagctgaacgtttgaagcaaca 118  Q
    |||||||||||| || || |||| ||| || ||||||||||||||||||| ||    ||| |||| |||||||||||||||||||||||||||||||| |    
T  17324193 gggagcaagtttctgacttaggtccttttaagctattgtgatgtctcctccgatatactggaactagagtggtggtcgaagctgaacgtttgaagcaaaa 17324094  T
Q  119 tcactatcaggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgt 178  Q
    ||||||||||||| |   || |||||||||||||||||||||||||||||||| ||||||    
T  17324093 tcactatcaggtgtcgaattgatcactgttggcggtgttggttctttgaggagttgttgt 17324034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 26 - 180
Target Start/End: Original strand, 45181642 - 45181800
Alignment:
Q  26 agcaagtttgtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaacatca 121  Q
    |||||||||||| ||||||| ||| |||||| ||||||||||||||     |||| | ||||| |||||||||||||||| ||| | |||| ||| ||||    
T  45181642 agcaagtttgtgactcaggtccttttaggctgttgtgatgtctccttcgatagaccggaacttaagtggtggtcgaagctaaacatctgaatcaatatca 45181741  T
Q  122 ctatcaggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtta 180  Q
    |||||| ||||||  || ||||| |||||||||||||||||||||||||||||||||||    
T  45181742 ctatcaagtgcctaattgatcaccgttggcggtgttggttctttgaggagctgttgtta 45181800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 23 - 180
Target Start/End: Original strand, 16285111 - 16285272
Alignment:
Q  23 gggagcaagtttgtgtctcaggttcttctaggctattgtgatgtctcctcaga----ctgaaacttgagtggtggtcgaagctgaacgtttgaagcaaca 118  Q
    ||||||||||||| | ||||||| ||| |||||| |||||| | |||||| ||    | | |||||||||||||||| ||||||||| |||||||||| |    
T  16285111 gggagcaagtttgcgactcaggtccttttaggctgttgtgacggctcctccgataaaccggaacttgagtggtggtcaaagctgaacatttgaagcaaaa 16285210  T
Q  119 tcactatcaggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtta 180  Q
    |||||||| |||||||  || |||||||||||||||||||||||||| |||| |||||||||    
T  16285211 tcactatcgggtgcctaattaatcactgttggcggtgttggttctttaaggaactgttgtta 16285272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 180
Target Start/End: Original strand, 23087617 - 23087717
Alignment:
Q  80 aacttgagtggtggtcgaagctgaacgtttgaagcaacatcactatcaggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtt 179  Q
    |||||||||| | ||||||||||||||||||||| || ||||||||| | |||||  || |||| ||||||||||| ||||||||||| |||||||||||    
T  23087617 aacttgagtgatagtcgaagctgaacgtttgaagtaaaatcactatcggatgcctaattgatcattgttggcggtgatggttctttgatgagctgttgtt 23087716  T
Q  180 a 180  Q
    |    
T  23087717 a 23087717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 180
Target Start/End: Original strand, 25362318 - 25362479
Alignment:
Q  23 gggagcaagtttgtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaaca 118  Q
    ||||||||||||||| ||||||| ||| |||||| |||||||||||||      |||| | ||||||||||||| | ||||||||||||||||||||| |    
T  25362318 gggagcaagtttgtgactcaggtccttttaggctgttgtgatgtctccattgatagaccggaacttgagtggtgattgaagctgaacgtttgaagcaaaa 25362417  T
Q  119 tcactatcaggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtta 180  Q
    || ||||| |||||||  || |||||||||||||||||| ||||||||||||| ||||||||    
T  25362418 tctctatcgggtgcctaattgatcactgttggcggtgttagttctttgaggagttgttgtta 25362479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 180
Target Start/End: Original strand, 35847143 - 35847304
Alignment:
Q  23 gggagcaagtttgtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaaca 118  Q
    ||||||| ||||||| ||| ||| ||| ||||||  ||||||||||||||    |||| |  |||||||||||||||||||||||||||||||||||| |    
T  35847143 gggagcacgtttgtgactcgggtccttttaggctgctgtgatgtctcctccgatagaccgggacttgagtggtggtcgaagctgaacgtttgaagcaaaa 35847242  T
Q  119 tcactatcaggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtta 180  Q
    |||||||| |||||||  || || | ||||||||||||||||||||||||||| ||||||||    
T  35847243 tcactatcgggtgcctaattgataaatgttggcggtgttggttctttgaggagttgttgtta 35847304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 180
Target Start/End: Original strand, 39368907 - 39369067
Alignment:
Q  23 gggagcaagtttgtgtctcaggttcttctaggctattgtgatgtctcctcag----actgaaacttgagtggtggtcgaagctgaacgtttgaagcaaca 118  Q
    |||||||||||| || ||||||||||| |||| | ||||| |||||||||||    || |  || |||||||||||||||||||||||||||||||||      
T  39368907 gggagcaagtttttgactcaggttcttttaggttgttgtgttgtctcctcagtgcgaccgggacgtgagtggtggtcgaagctgaacgtttgaagcaatg 39369006  T
Q  119 tcactatcaggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtta 180  Q
    ||||| || |||||||| |||||||||||||||| ||||||||||| |||||||||||||||    
T  39369007 tcact-tcgggtgccttatttatcactgttggcgatgttggttcttggaggagctgttgtta 39369067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 23 - 180
Target Start/End: Complemental strand, 42742372 - 42742213
Alignment:
Q  23 gggagcaagtttgtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaaca 118  Q
    ||||||||||||||| |||| || ||| |||||| |||||||||||||||    |||||| |||||||||||||||| ||| || |||||||||| || |    
T  42742372 gggagcaagtttgtgactcatgtccttttaggctgttgtgatgtctcctccgatagactggaacttgagtggtggtcaaagttgtacgtttgaaggaaaa 42742273  T
Q  119 tcactatcaggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtta 180  Q
    ||||| ||||||||||  ||  ||||||||  ||||||||||||||||||||||||||||||    
T  42742272 tcact-tcaggtgcctaattg-tcactgttcacggtgttggttctttgaggagctgttgtta 42742213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 81 - 180
Target Start/End: Original strand, 17218822 - 17218921
Alignment:
Q  81 acttgagtggtggtcgaagctgaacgtttgaagcaacatcactatcaggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtta 180  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||  |||||||  ||  ||||||||||||||||||||||||||| ||| ||||||||    
T  17218822 acttgagtggtggtcgaagctgaacttttgaagcaaaatcactattgggtgcctaattgttcactgttggcggtgttggttctttgatgagttgttgtta 17218921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 180
Target Start/End: Original strand, 3204328 - 3204488
Alignment:
Q  23 gggagcaagtttgtgtctcaggttcttctaggctattgtgatgtctcctcaga----ctgaaacttgagtggtggtcgaagctgaacgtttgaagcaaca 118  Q
    ||||||||||||||| || || ||||| |||||| ||||||||||||||| ||    ||  |||||||||||||||| |||||||||||| || |||| |    
T  3204328 gggagcaagtttgtgacttagattcttttaggctgttgtgatgtctcctccgatatactagaacttgagtggtggtcaaagctgaacgttgga-gcaaaa 3204426  T
Q  119 tcactatcaggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtta 180  Q
    ||  |  |  |||||||||| |||||| ||| ||||||||||||||||||||| ||||||||    
T  3204427 tcttttccgagtgcctttttgatcactattgacggtgttggttctttgaggagttgttgtta 3204488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 180
Target Start/End: Original strand, 29685871 - 29686032
Alignment:
Q  23 gggagcaagtttgtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaaca 118  Q
    |||||| |||||||| ||||| | ||| |||||| |||||| ||||||||    |||| | || ||| |||||||| |||||||||||||||||||||      
T  29685871 gggagctagtttgtgactcagatccttttaggcttttgtgaagtctcctccgatagaccggaatttgtgtggtggtggaagctgaacgtttgaagcaaag 29685970  T
Q  119 tcactatcaggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtta 180  Q
    ||| |||||||||| |  || | ||||||||  |||||||||||||||||||| ||||||||    
T  29685971 tcattatcaggtgcttaattgaccactgttgatggtgttggttctttgaggagttgttgtta 29686032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 180
Target Start/End: Original strand, 2707167 - 2707267
Alignment:
Q  80 aacttgagtggtggtcgaagctgaacgtttgaagcaacatcactatcaggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtt 179  Q
    |||||||||||||||| |||||||||||||||||||| |||| ||   ||||| |  || || |||||||| |||||||||| | ||||||||| |||||    
T  2707167 aacttgagtggtggtcaaagctgaacgtttgaagcaaaatcattactgggtgcttaattgattactgttggtggtgttggttatctgaggagctattgtt 2707266  T
Q  180 a 180  Q
    |    
T  2707267 a 2707267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 51 - 173
Target Start/End: Complemental strand, 2334752 - 2334625
Alignment:
Q  51 taggctattgtgatgtctcctc-ag--actgaaacttgagtggtggtcgaagctgaacgtttgaagcaacatcactatcaggtgccttttttatcact-g 146  Q
    |||||| ||||||||||||||| ||  || |||||||||||||||||||||||||  |||| ||||||  ||||||||| | || ||  || ||||||      
T  2334752 taggctgttgtgatgtctcctcgagttaccgaaacttgagtggtggtcgaagctgtgcgttggaagcattatcactatcggatgtctaattgatcactca 2334653  T
Q  147 ttggcggtgttgg-ttctttgaggagct 173  Q
    ||||||||||||| ||||||||||||||    
T  2334652 ttggcggtgttggtttctttgaggagct 2334625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 180
Target Start/End: Original strand, 1223089 - 1223124
Alignment:
Q  145 tgttggcggtgttggttctttgaggagctgttgtta 180  Q
    ||||||||||||||||||||||||||||| ||||||    
T  1223089 tgttggcggtgttggttctttgaggagctattgtta 1223124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 176
Target Start/End: Complemental strand, 37128954 - 37128802
Alignment:
Q  28 caagtttgtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaacatcact 123  Q
    |||||||||| |||| || |||  ||| | |||||||||||||||    |||| ||||||||| |||||||||||||||||| ||||| |||| ||||||    
T  37128954 caagtttgtgactcaagtcctttcaggatgttgtgatgtctcctccgatagaccgaaacttgaatggtggtcgaagctgaacatttgatgcaaaatcact 37128855  T
Q  124 atcaggtgccttttttatcactgttggcggtgttggttctttgaggagctgtt 176  Q
    ||| |||||||  || |||| ||||||||||||||||||||||||||||||||    
T  37128854 atcgggtgcctaattcatcattgttggcggtgttggttctttgaggagctgtt 37128802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 26 - 180
Target Start/End: Original strand, 41958280 - 41958438
Alignment:
Q  26 agcaagtttgtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaacatca 121  Q
    |||||||||||| ||||||| ||| ||| || |||| | ||||||||    |||| |||||||||||||||||||||||||||| |||||| ||| ||||    
T  41958280 agcaagtttgtgactcaggtccttttagtctgttgtaacgtctcctctgatagaccgaaacttgagtggtggtcgaagctgaacatttgaaacaaaatca 41958379  T
Q  122 ctatcaggtgccttttttatcactgttggcggtgttggttctttgaggagctgttgtta 180  Q
    ||||| || ||||  || ||||||||||||| ||||||||||||||| || ||||||||    
T  41958380 ctatcgggcgcctaattcatcactgttggcgatgttggttctttgagaagttgttgtta 41958438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 23 - 116
Target Start/End: Complemental strand, 4397466 - 4397369
Alignment:
Q  23 gggagcaagtttgtgtctcaggttcttctaggctattgtgatgtctcctc----agactgaaacttgagtggtggtcgaagctgaacgtttgaagcaa 116  Q
    ||||||||||||||| ||||||| ||| |||| | |||||||||||||||    |||| | ||||||||||||||||||||||| |||||||||||||    
T  4397466 gggagcaagtttgtgactcaggtccttttaggttgttgtgatgtctcctccgaaagaccggaacttgagtggtggtcgaagctgtacgtttgaagcaa 4397369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University