View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4660_high_20 (Length: 290)

Name: NF4660_high_20
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4660_high_20
NF4660_high_20
[»] chr7 (42 HSPs)
chr7 (58-189)||(45997507-45997643)
chr7 (57-189)||(38883257-38883394)
chr7 (58-155)||(31231613-31231715)
chr7 (58-189)||(24836056-24836192)
chr7 (56-155)||(20184235-20184339)
chr7 (59-189)||(3953042-3953177)
chr7 (62-155)||(30594763-30594861)
chr7 (59-189)||(34052315-34052450)
chr7 (59-189)||(35339278-35339413)
chr7 (58-155)||(24123754-24123856)
chr7 (63-189)||(30259070-30259201)
chr7 (63-154)||(10398390-10398486)
chr7 (55-189)||(10936466-10936605)
chr7 (59-155)||(39617841-39617942)
chr7 (59-155)||(47237433-47237526)
chr7 (58-189)||(9285713-9285849)
chr7 (58-189)||(9289780-9289916)
chr7 (63-155)||(33749714-33749810)
chr7 (60-155)||(39143713-39143813)
chr7 (87-189)||(48103404-48103508)
chr7 (81-155)||(31521547-31521626)
chr7 (59-155)||(12142263-12142364)
chr7 (111-189)||(40358151-40358229)
chr7 (59-189)||(25742435-25742566)
chr7 (59-111)||(38883221-38883273)
chr7 (111-189)||(37093804-37093882)
chr7 (59-111)||(10936589-10936641)
chr7 (59-111)||(30259185-30259237)
chr7 (59-111)||(31231735-31231787)
chr7 (59-111)||(33721827-33721879)
chr7 (63-111)||(38528394-38528442)
chr7 (111-155)||(38528467-38528511)
chr7 (59-111)||(38528531-38528583)
chr7 (112-154)||(1402990-1403032)
chr7 (57-111)||(12142190-12142244)
chr7 (112-154)||(25572883-25572925)
chr7 (58-111)||(29277837-29277890)
chr7 (58-111)||(34052278-34052331)
chr7 (115-148)||(44148724-44148757)
chr7 (63-111)||(7954985-7955033)
chr7 (59-111)||(20184358-20184410)
chr7 (59-111)||(35665633-35665685)
[»] chr5 (35 HSPs)
chr5 (200-274)||(2268116-2268190)
chr5 (57-189)||(16472991-16473128)
chr5 (58-189)||(15855879-15856015)
chr5 (59-189)||(35420612-35420747)
chr5 (59-189)||(20476467-20476602)
chr5 (59-155)||(33629345-33629446)
chr5 (54-189)||(13754286-13754426)
chr5 (59-189)||(1138595-1138730)
chr5 (54-111)||(2268724-2268781)
chr5 (88-189)||(21261979-21262085)
chr5 (91-155)||(24397278-24397346)
chr5 (54-188)||(21259725-21259864)
chr5 (111-155)||(19976332-19976376)
chr5 (58-141)||(21591212-21591300)
chr5 (58-141)||(21595329-21595417)
chr5 (59-154)||(37552308-37552408)
chr5 (59-189)||(4266018-4266153)
chr5 (111-189)||(12744862-12744940)
chr5 (59-111)||(15855843-15855895)
chr5 (59-111)||(35420731-35420783)
chr5 (116-188)||(735313-735385)
chr5 (62-189)||(12807947-12808079)
chr5 (89-154)||(37655182-37655252)
chr5 (111-155)||(780851-780895)
chr5 (2-34)||(2268818-2268850)
chr5 (63-111)||(8364749-8364797)
chr5 (63-111)||(16472959-16473007)
chr5 (111-155)||(35276349-35276393)
chr5 (117-189)||(1456085-1456157)
chr5 (101-148)||(34513465-34513512)
chr5 (61-111)||(24397365-24397415)
chr5 (114-147)||(1384388-1384421)
chr5 (59-155)||(43539177-43539278)
chr5 (63-111)||(10132373-10132421)
chr5 (59-111)||(20476431-20476483)
[»] chr1 (58 HSPs)
chr1 (55-189)||(14387011-14387150)
chr1 (59-189)||(50627167-50627302)
chr1 (59-189)||(19954911-19955046)
chr1 (59-148)||(36880588-36880682)
chr1 (60-189)||(1387814-1387948)
chr1 (61-189)||(5189505-5189638)
chr1 (59-189)||(27240924-27241059)
chr1 (60-189)||(3607730-3607864)
chr1 (56-155)||(27926248-27926351)
chr1 (57-155)||(9978049-9978152)
chr1 (59-189)||(2854532-2854667)
chr1 (59-189)||(23698502-23698637)
chr1 (60-189)||(19796982-19797116)
chr1 (59-155)||(40647188-40647289)
chr1 (59-155)||(47940570-47940671)
chr1 (61-155)||(15324697-15324796)
chr1 (59-189)||(42561295-42561430)
chr1 (59-155)||(26208495-26208596)
chr1 (59-155)||(51276695-51276796)
chr1 (88-155)||(6079454-6079526)
chr1 (58-189)||(27670179-27670316)
chr1 (59-189)||(48954214-48954349)
chr1 (111-189)||(9895289-9895367)
chr1 (63-155)||(27928302-27928398)
chr1 (59-155)||(51789597-51789698)
chr1 (104-147)||(39015243-39015286)
chr1 (113-185)||(48645073-48645145)
chr1 (63-155)||(49284298-49284395)
chr1 (111-155)||(957659-957703)
chr1 (111-155)||(4299449-4299493)
chr1 (63-155)||(28244028-28244119)
chr1 (106-154)||(36007872-36007920)
chr1 (59-111)||(42561414-42561466)
chr1 (59-111)||(50627131-50627183)
chr1 (59-111)||(51789714-51789766)
chr1 (114-156)||(29598392-29598434)
chr1 (61-111)||(50162658-50162708)
chr1 (54-111)||(23698621-23698678)
chr1 (54-111)||(25297966-25298023)
chr1 (59-155)||(50162538-50162639)
chr1 (111-147)||(2302481-2302517)
chr1 (59-111)||(5189469-5189521)
chr1 (59-111)||(19797100-19797152)
chr1 (59-111)||(19955030-19955082)
chr1 (59-111)||(49285094-49285146)
chr1 (58-189)||(2125069-2125205)
chr1 (60-111)||(9978171-9978222)
chr1 (57-111)||(27926371-27926425)
chr1 (58-155)||(50856320-50856422)
chr1 (54-111)||(3607848-3607905)
chr1 (59-111)||(2854651-2854703)
chr1 (59-111)||(4299514-4299566)
chr1 (59-111)||(15324626-15324678)
chr1 (114-154)||(18651310-18651350)
chr1 (106-146)||(22339036-22339076)
chr1 (59-111)||(29598456-29598508)
chr1 (59-111)||(47940690-47940742)
chr1 (59-111)||(48954333-48954385)
[»] chr6 (25 HSPs)
chr6 (59-155)||(14393634-14393735)
chr6 (59-189)||(11687143-11687278)
chr6 (59-189)||(15546668-15546803)
chr6 (59-189)||(21379941-21380076)
chr6 (60-155)||(7808679-7808779)
chr6 (59-189)||(8091098-8091233)
chr6 (57-155)||(17367062-17367158)
chr6 (59-189)||(885421-885556)
chr6 (111-189)||(3369021-3369099)
chr6 (59-155)||(4890480-4890581)
chr6 (64-155)||(4238924-4239020)
chr6 (59-189)||(13172574-13172708)
chr6 (90-155)||(13439766-13439836)
chr6 (87-189)||(20501742-20501849)
chr6 (57-189)||(18998115-18998252)
chr6 (63-153)||(29609073-29609168)
chr6 (58-111)||(11687262-11687315)
chr6 (59-111)||(885385-885437)
chr6 (82-154)||(7187633-7187710)
chr6 (59-111)||(6433690-6433742)
chr6 (59-111)||(15546632-15546684)
chr6 (59-111)||(21380060-21380112)
chr6 (90-148)||(31764356-31764419)
chr6 (54-111)||(3368980-3369037)
chr6 (59-111)||(4890600-4890652)
[»] chr4 (35 HSPs)
chr4 (59-189)||(530669-530804)
chr4 (59-155)||(4552855-4552956)
chr4 (59-155)||(42274492-42274593)
chr4 (59-189)||(18417693-18417828)
chr4 (59-188)||(55107561-55107695)
chr4 (60-155)||(32318721-32318821)
chr4 (59-189)||(1298948-1299083)
chr4 (59-189)||(13204413-13204548)
chr4 (59-189)||(21048705-21048839)
chr4 (59-155)||(24915794-24915895)
chr4 (57-189)||(20435138-20435275)
chr4 (55-155)||(27434680-27434785)
chr4 (61-155)||(24969543-24969642)
chr4 (90-189)||(35360712-35360816)
chr4 (117-189)||(52824275-52824347)
chr4 (111-189)||(4895008-4895086)
chr4 (59-155)||(23928568-23928668)
chr4 (109-154)||(56552132-56552177)
chr4 (60-189)||(4688248-4688383)
chr4 (58-155)||(55049399-55049501)
chr4 (59-111)||(1298912-1298964)
chr4 (59-189)||(28809846-28809982)
chr4 (90-189)||(24294503-24294607)
chr4 (56-111)||(55107521-55107576)
chr4 (58-111)||(530788-530841)
chr4 (114-151)||(3422489-3422526)
chr4 (59-111)||(27434610-27434662)
chr4 (61-155)||(36030941-36031031)
chr4 (59-111)||(52824239-52824291)
chr4 (82-148)||(2272443-2272514)
chr4 (60-111)||(18417658-18417709)
chr4 (121-155)||(52587382-52587416)
chr4 (58-111)||(24969663-24969716)
chr4 (87-142)||(9355581-9355641)
chr4 (59-111)||(20435259-20435311)
[»] chr3 (58 HSPs)
chr3 (59-189)||(36657433-36657568)
chr3 (54-148)||(22176186-22176285)
chr3 (59-189)||(21969157-21969292)
chr3 (59-189)||(21991593-21991728)
chr3 (54-155)||(22101235-22101341)
chr3 (59-189)||(36822760-36822895)
chr3 (59-189)||(3970491-3970626)
chr3 (59-189)||(45487835-45487970)
chr3 (57-189)||(13078161-13078298)
chr3 (61-189)||(32237396-32237529)
chr3 (60-188)||(10017151-10017279)
chr3 (59-189)||(12789642-12789777)
chr3 (59-189)||(26906490-26906625)
chr3 (59-189)||(36278756-36278891)
chr3 (59-155)||(4072273-4072374)
chr3 (59-155)||(25446320-25446420)
chr3 (59-155)||(50099504-50099605)
chr3 (59-185)||(10441258-10441389)
chr3 (54-155)||(43639076-43639182)
chr3 (111-189)||(12838113-12838191)
chr3 (59-155)||(35368803-35368904)
chr3 (60-155)||(8831811-8831911)
chr3 (59-155)||(10117586-10117682)
chr3 (57-189)||(25488339-25488476)
chr3 (60-155)||(13723989-13724088)
chr3 (59-189)||(25561047-25561182)
chr3 (59-189)||(36329188-36329315)
chr3 (59-155)||(39850344-39850446)
chr3 (59-148)||(46679338-46679432)
chr3 (59-151)||(26977764-26977861)
chr3 (59-155)||(55340293-55340394)
chr3 (60-155)||(10254639-10254739)
chr3 (57-189)||(45712901-45713038)
chr3 (59-155)||(44611382-44611482)
chr3 (59-111)||(25488460-25488512)
chr3 (59-111)||(25561011-25561063)
chr3 (59-111)||(35368549-35368601)
chr3 (59-111)||(36657552-36657604)
chr3 (61-155)||(404115-404213)
chr3 (63-153)||(1476555-1476650)
chr3 (117-189)||(46664212-46664284)
chr3 (117-155)||(157031-157069)
chr3 (114-189)||(43150516-43150591)
chr3 (114-151)||(26976902-26976939)
chr3 (59-111)||(21969276-21969328)
chr3 (59-111)||(21991712-21991764)
chr3 (59-111)||(45487799-45487851)
chr3 (80-154)||(37536941-37537020)
chr3 (61-111)||(12838079-12838129)
chr3 (114-155)||(44920706-44920747)
chr3 (59-111)||(4072393-4072445)
chr3 (59-111)||(10441377-10441429)
chr3 (59-111)||(12789606-12789658)
chr3 (59-111)||(26906454-26906506)
chr3 (59-107)||(32237517-32237565)
chr3 (59-111)||(36278875-36278927)
chr3 (59-111)||(39850464-39850516)
chr3 (111-155)||(49984001-49984045)
[»] chr2 (33 HSPs)
chr2 (59-189)||(24101832-24101967)
chr2 (57-189)||(45408661-45408798)
chr2 (59-189)||(34490492-34490627)
chr2 (59-155)||(22269792-22269893)
chr2 (59-155)||(43476016-43476117)
chr2 (58-189)||(12850541-12850677)
chr2 (59-189)||(9933570-9933704)
chr2 (59-155)||(1923980-1924081)
chr2 (59-155)||(7737135-7737236)
chr2 (59-155)||(42713777-42713878)
chr2 (58-148)||(2818743-2818838)
chr2 (59-155)||(6605805-6605905)
chr2 (59-189)||(3116912-3117047)
chr2 (59-189)||(29229361-29229499)
chr2 (59-189)||(29342661-29342799)
chr2 (59-155)||(27920642-27920743)
chr2 (54-189)||(16705769-16705909)
chr2 (111-155)||(23835947-23835991)
chr2 (58-189)||(9281346-9281482)
chr2 (117-189)||(34455921-34455993)
chr2 (54-155)||(20892955-20893060)
chr2 (87-189)||(9850786-9850892)
chr2 (59-111)||(16705733-16705785)
chr2 (59-111)||(45408625-45408677)
chr2 (56-111)||(24101951-24102006)
chr2 (57-111)||(12850661-12850715)
chr2 (57-107)||(34455883-34455933)
chr2 (59-111)||(1924100-1924152)
chr2 (66-145)||(7116450-7116534)
chr2 (59-111)||(9281466-9281518)
chr2 (59-111)||(20892884-20892936)
chr2 (59-111)||(23835876-23835928)
chr2 (85-156)||(40362552-40362627)
[»] chr8 (23 HSPs)
chr8 (54-185)||(40891053-40891189)
chr8 (59-189)||(38629510-38629645)
chr8 (61-189)||(37114274-37114407)
chr8 (87-188)||(4262004-4262110)
chr8 (59-155)||(17426628-17426729)
chr8 (63-155)||(24741827-24741924)
chr8 (56-189)||(29780956-29781094)
chr8 (57-155)||(33100643-33100746)
chr8 (59-189)||(38520054-38520189)
chr8 (59-155)||(8210393-8210494)
chr8 (59-147)||(15882279-15882372)
chr8 (59-189)||(12234502-12234638)
chr8 (59-156)||(23940804-23940906)
chr8 (56-144)||(38515585-38515678)
chr8 (59-111)||(15882200-15882252)
chr8 (90-155)||(11828627-11828697)
chr8 (63-148)||(35467247-35467337)
chr8 (59-111)||(29781078-29781130)
chr8 (59-111)||(38520018-38520070)
chr8 (58-107)||(24211401-24211450)
chr8 (114-155)||(25264287-25264328)
chr8 (59-111)||(8210323-8210375)
chr8 (59-111)||(12234466-12234518)
[»] scaffold0122 (2 HSPs)
scaffold0122 (57-189)||(45870-46007)
scaffold0122 (59-111)||(45834-45886)
[»] scaffold0086 (1 HSPs)
scaffold0086 (60-189)||(48162-48296)
[»] scaffold0163 (2 HSPs)
scaffold0163 (59-155)||(1939-2040)
scaffold0163 (59-111)||(2059-2111)
[»] scaffold0188 (1 HSPs)
scaffold0188 (59-155)||(7156-7257)
[»] scaffold0653 (1 HSPs)
scaffold0653 (58-189)||(3392-3528)
[»] scaffold0107 (2 HSPs)
scaffold0107 (59-189)||(51099-51234)
scaffold0107 (59-111)||(51063-51115)
[»] scaffold0137 (1 HSPs)
scaffold0137 (59-155)||(10185-10286)
[»] scaffold0595 (1 HSPs)
scaffold0595 (59-133)||(5797-5878)
[»] scaffold0006 (1 HSPs)
scaffold0006 (58-111)||(72287-72340)
[»] scaffold0118 (1 HSPs)
scaffold0118 (60-155)||(14512-14612)
[»] scaffold0069 (1 HSPs)
scaffold0069 (59-111)||(26405-26457)


Alignment Details
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 42)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 58 - 189
Target Start/End: Original strand, 45997507 - 45997643
Alignment:
Q  58 tggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttatta 152  Q
    ||||||||||||||||| |||  | ||| |||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||    
T  45997507 tggagaaaacttaggtacaatttcatatgtgctttttgtatggttcttaactaaattcaccatgatttcctcaaatccataattttctcaaagtttatta 45997606  T
Q  153 tattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    |||        |||||||||||| |||||||||||||    
T  45997607 tatccaaaaaatatgtatttttagttaagaaccatac 45997643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 189
Target Start/End: Complemental strand, 38883394 - 38883257
Alignment:
Q  57 atggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaac-----catgatttcctcaaatccataattttctcaaagtttatt 151  Q
    |||||||||||||||||| ||| ||||| |||||||| |||||||||||||||||      |||||||||||||||||||||||||||||||||||| ||    
T  38883394 atggagaaaacttaggtacaattccttagatgcttttcgtatggttcttaactaaaaatatcatgatttcctcaaatccataattttctcaaagtttgtt 38883295  T
Q  152 atattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||||        |||||||||||| |||||||||||||    
T  38883294 atatccaaaaaatatgtatttttagttaagaaccatac 38883257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 155
Target Start/End: Original strand, 31231613 - 31231715
Alignment:
Q  58 tggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttatta 152  Q
    ||||||||||||||||| ||| |||||  |||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||| |||    
T  31231613 tggagaaaacttaggtacaattccttaggtgctttttgtatggttcttaactaaattcaccatgatttcctcaaatccataattttctcaaagtttgtta 31231712  T
Q  153 tat 155  Q
    |||    
T  31231713 tat 31231715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 189
Target Start/End: Complemental strand, 24836192 - 24836056
Alignment:
Q  58 tggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttatta 152  Q
    ||||||||||||||||| ||| |||||  ||||||| |||||||||||||||||     ||||||||||||||||||||||||||||||||||||| |||    
T  24836192 tggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaaattcaccatgatttcctcaaatccataattttctcaaagtttgtta 24836093  T
Q  153 tattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    |||        |||||||||||| || ||||||||||    
T  24836092 tatccaaaaaatatgtatttttagttnagaaccatac 24836056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 20184235 - 20184339
Alignment:
Q  56 tatggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttat 150  Q
    ||||||||||||||||||| ||| |||||  ||||||| ||||| |||||||||||     ||||||||||||||||||||||||||||||||||||| |    
T  20184235 tatggagaaaacttaggtacaattccttaggtgcttttcgtatgattcttaactaaattcaccatgatttcctcaaatccataattttctcaaagtttgt 20184334  T
Q  151 tatat 155  Q
    |||||    
T  20184335 tatat 20184339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 3953042 - 3953177
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||| | ||||| |||||||| ||||||||     |||||||||||||||||||||||||||| |||||||| ||||    
T  3953042 ggagaaaacttaggtacaattccttatgtacttttcgtatggtttttaactaaattcaccatgatttcctcaaatccataattttcacaaagtttgttat 3953141  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        |||||||||||| |||||||||||||    
T  3953142 atccaaaaaatatgtatttttagttaagaaccatac 3953177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 155
Target Start/End: Complemental strand, 30594861 - 30594763
Alignment:
Q  62 gaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    |||| |||||||| ||| ||||| |||||||| |||||||||||||||||     ||||||||||||||||||||||||||||||||||||| ||||||    
T  30594861 gaaagcttaggtacaattccttagatgcttttcgtatggttcttaactaaattcaccatgatttcctcaaatccataattttctcaaagtttgttatat 30594763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 34052450 - 34052315
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||  ||||||| |||||||||||| ||||     ||||||||||||||||| ||||||||||||||||||| ||||    
T  34052450 ggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttagctaaattcaccatgatttcctcaaattcataattttctcaaagtttgttat 34052351  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        |||||||||||| |||||||||||||    
T  34052350 atccaaaaaatatgtatttttagttaagaaccatac 34052315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 35339278 - 35339413
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaac-----catgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||  ||||||| |||||||||||||||||      ||||||||| |||||||||||||||||||||||||| ||||    
T  35339278 ggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaaattcatcatgatttcttcaaatccataattttctcaaagtttgttat 35339377  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        |||||||||||| |||||||||||||    
T  35339378 atccaaaaaatatgtatttttatttaagaaccatac 35339413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 58 - 155
Target Start/End: Original strand, 24123754 - 24123856
Alignment:
Q  58 tggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttatta 152  Q
    ||||||||| ||||||| ||| |||||| | ||||||||||||||| |||||||     | ||||||||||||||||||||||||||||||||||| |||    
T  24123754 tggagaaaatttaggtacaattccttatgtactttttgtatggttcctaactaaaaatactatgatttcctcaaatccataattttctcaaagtttgtta 24123853  T
Q  153 tat 155  Q
    |||    
T  24123854 tat 24123856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 63 - 189
Target Start/End: Original strand, 30259070 - 30259201
Alignment:
Q  63 aaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattatattn 157  Q
    |||||||||||| ||| |||||  |||||||  ||||||||||||||||     ||||||||| ||||||||||||||||||||||||||| ||||||      
T  30259070 aaaacttaggtacaattccttaggtgcttttcctatggttcttaactaaattcaccatgattttctcaaatccataattttctcaaagtttgttatatcc 30259169  T
Q  158 nnnnnntatgtatttttaattaagaaccatac 189  Q
          |||||||||||| |||||||||||||    
T  30259170 aaaaaatatgtatttttagttaagaaccatac 30259201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 10398486 - 10398390
Alignment:
Q  63 aaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattata 154  Q
    |||||||||||  | | ||||||||||||||||||||||||||||||||     ||||||||||||||||| |||||| |||||||||||| |||||    
T  10398486 aaaacttaggtgcatttccttatatgctttttgtatggttcttaactaaattatccatgatttcctcaaatacataatcttctcaaagtttgttata 10398390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 55 - 189
Target Start/End: Original strand, 10936466 - 10936605
Alignment:
Q  55 atatggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagttta 149  Q
    |||||||||||||||| ||| ||| |||||  ||||||| ||| |||||||||||||     |||||| ||||||||||| ||||||||||||||||||     
T  10936466 atatggagaaaacttatgtacaattccttaggtgcttttcgtacggttcttaactaaattcaccatgacttcctcaaatctataattttctcaaagtttg 10936565  T
Q  150 ttatattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    |||||         |||||||||||| |||||||||||||    
T  10936566 ttataaccaaaaaatatgtatttttagttaagaaccatac 10936605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 39617841 - 39617942
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| |||  |||| ||| | || |||||||||||||||||     ||||||||||||| ||||||||||||||||||||||| ||||    
T  39617841 ggagaaaacttaggtacaatttcttagatgttcttcgtatggttcttaactaaattcaccatgatttcctccaatccataattttctcaaagtttgttat 39617940  T
Q  154 at 155  Q
    ||    
T  39617941 at 39617942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 47237433 - 47237526
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaaccatgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    |||||||||||||||||||| ||| |  |||||||  ||||||||||||||||  || |||||||| ||||||||||||||||||||||| ||||||    
T  47237433 ggagaaaacttaggtataattcct-aggtgcttttcctatggttcttaactaa--attatttcctcgaatccataattttctcaaagtttgttatat 47237526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 189
Target Start/End: Original strand, 9285713 - 9285849
Alignment:
Q  58 tggagaaaacttaggtataatcccttatatgctttttgtatggttcttaacta-----accatgatttcctcaaatccataattttctcaaagtttatta 152  Q
    ||||||||||||||||| ||| | ||   ||||||||||||||||||||| ||     ||||||||||||||||||  |||||||| ||||||||| |||    
T  9285713 tggagaaaacttaggtacaattcatttggtgctttttgtatggttcttaattaaattcaccatgatttcctcaaatttataattttatcaaagtttgtta 9285812  T
Q  153 tattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    |||        |||||||||||| |||||||||||||    
T  9285813 tatccaaaaaatatgtatttttatttaagaaccatac 9285849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 189
Target Start/End: Original strand, 9289780 - 9289916
Alignment:
Q  58 tggagaaaacttaggtataatcccttatatgctttttgtatggttcttaacta-----accatgatttcctcaaatccataattttctcaaagtttatta 152  Q
    ||||||||||||||||| ||| | ||   ||||||||||||||||||||| ||     ||||||||||||||||||  |||||||| ||||||||| |||    
T  9289780 tggagaaaacttaggtacaattcatttggtgctttttgtatggttcttaattaaattcaccatgatttcctcaaatttataattttatcaaagtttgtta 9289879  T
Q  153 tattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    |||        |||||||||||| |||||||||||||    
T  9289880 tatccaaaaaatatgtatttttatttaagaaccatac 9289916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 155
Target Start/End: Complemental strand, 33749810 - 33749714
Alignment:
Q  63 aaaacttaggtataatcccttatatgctttttgtatggttcttaactaac-----catgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    ||||||||||||||| | |||| ||  ||||||||||||||||||||||      ||||||||||| |||| ||||||||||||||||||||||||||    
T  33749810 aaaacttaggtataa-ctcttaaatattttttgtatggttcttaactaaattcatcatgatttccttaaattcataattttctcaaagtttattatat 33749714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 155
Target Start/End: Original strand, 39143713 - 39143813
Alignment:
Q  60 gagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattata 154  Q
    ||||||||||||||| ||| | ||  |||||||| ||||||||||| |||||     |||| ||||||||||||||||||| |||||||||||| |||||    
T  39143713 gagaaaacttaggtacaattcattggatgcttttcgtatggttcttgactaaattcaccataatttcctcaaatccataatattctcaaagtttgttata 39143812  T
Q  155 t 155  Q
    |    
T  39143813 t 39143813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 87 - 189
Target Start/End: Complemental strand, 48103508 - 48103404
Alignment:
Q  87 tgctttttgtatggttcttaactaac--catgatttcctcaaatccataattttctcaaagtttattatattnnnnnnntatgtatttttaattaagaac 184  Q
    |||||||||||||||||||||||||   | |||||||||||||||||||||  ||||||||||| ||||||        |||||||||||| |||||||     
T  48103508 tgctttttgtatggttcttaactaaattcgtgatttcctcaaatccataataatctcaaagtttgttatatccaaaaaatatgtatttttagttaagaat 48103409  T
Q  185 catac 189  Q
    |||||    
T  48103408 catac 48103404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 155
Target Start/End: Original strand, 31521547 - 31521626
Alignment:
Q  81 cttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    |||| |||||||| |||||||||||||||||     ||||||||| ||||||| ||||||||| ||||||||||||||||    
T  31521547 cttagatgcttttcgtatggttcttaactaaatttaccatgattttctcaaattcataattttttcaaagtttattatat 31521626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 12142364 - 12142263
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||| || |||| ||| |||||| || |||| |||| ||||||||||||     ||||||||| |||||||||||||||||||||||| || ||||    
T  12142364 ggagaaaatttgggtacaattccttatgtgtttttcgtatagttcttaactaaattcaccatgattttctcaaatccataattttctcaaagattgttat 12142265  T
Q  154 at 155  Q
    ||    
T  12142264 at 12142263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 40358229 - 40358151
Alignment:
Q  111 accatgatttcctcaaatccataattttctcaaagtttattatattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||        |||| ||||||| |||||||||||||    
T  40358229 accatgatttcctcaaattcataattttctcaaagtttgttatatcaaaaaaatatgcatttttagttaagaaccatac 40358151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 25742435 - 25742566
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaac--catgatttcctcaaatccataattttctcaaagtttattatatt 156  Q
    |||||||||||| ||| |||  ||||  || ||||  ||||||||||||||||   ||| |||||||||||||||||||||||||||||||| ||||||     
T  25742435 ggagaaaacttatgtacaatttcttaggtgtttttcctatggttcttaactaaattcat-atttcctcaaatccataattttctcaaagtttgttatatc 25742533  T
Q  157 nnnnnnntatgtatttttaattaagaaccatac 189  Q
           |||||||||||| |||| ||||||||    
T  25742534 caaaaaatatgtatttttagttaacaaccatac 25742566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 38883221 - 38883273
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| ||||| |||||||| |||||||||||||||||    
T  38883221 ggagaaaacttaggtacaattccttagatgcttttcgtatggttcttaactaa 38883273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 37093882 - 37093804
Alignment:
Q  111 accatgatttcctcaaatccataattttctcaaagtttattatattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||||||||||||||||||  |||||||||||||||||| ||||||        ||| |||||||||||||||| |||||    
T  37093882 accatgatttcctcaaatttataattttctcaaagtttgttatatccaaaaaatatatatttttaattaagaatcatac 37093804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 10936641 - 10936589
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  ||||||| |||||||||||||||||    
T  10936641 ggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaa 10936589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 30259237 - 30259185
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| ||||   |||||||||||||||||||||||||    
T  30259237 ggagaaaacttaggtacaattccttgggtgctttttgtatggttcttaactaa 30259185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 31231787 - 31231735
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  ||||||| |||||||||||||||||    
T  31231787 ggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaa 31231735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 33721827 - 33721879
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  ||||||| |||||||||||||||||    
T  33721827 ggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaa 33721879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 38528394 - 38528442
Alignment:
Q  63 aaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||| ||||||| ||| ||||| ||||||||||||||||||||||||||    
T  38528394 aaaagttaggtacaattccttaaatgctttttgtatggttcttaactaa 38528442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 38528467 - 38528511
Alignment:
Q  111 accatgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    ||||||| |||||| ||||||||||||||||||||||| ||||||    
T  38528467 accatgaattcctcgaatccataattttctcaaagtttgttatat 38528511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 38528583 - 38528531
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  ||||||| |||||||||||||||||    
T  38528583 ggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaa 38528531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 1403032 - 1402990
Alignment:
Q  112 ccatgatttcctcaaatccataattttctcaaagtttattata 154  Q
    |||||||||||||||||| |||||||||||||| ||| |||||    
T  1403032 ccatgatttcctcaaatctataattttctcaaaatttgttata 1402990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 12142190 - 12142244
Alignment:
Q  57 atggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||||| ||| |||||  ||||||  |||||||||||||||||    
T  12142190 atggagaaaacttaggtacaattccttacgtgctttgggtatggttcttaactaa 12142244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 25572925 - 25572883
Alignment:
Q  112 ccatgatttcctcaaatccataattttctcaaagtttattata 154  Q
    |||||||||| ||||| |||||||||||||||||||| |||||    
T  25572925 ccatgatttcttcaaaaccataattttctcaaagtttgttata 25572883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 29277837 - 29277890
Alignment:
Q  58 tggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    ||||||||||||||||| ||| | |||  | |||||||||||||||||||||||    
T  29277837 tggagaaaacttaggtacaattctttaggtactttttgtatggttcttaactaa 29277890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 34052278 - 34052331
Alignment:
Q  58 tggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    ||||||||||||||||| | | |||||  ||||||| |||||||||||||||||    
T  34052278 tggagaaaacttaggtacatttccttaggtgcttttcgtatggttcttaactaa 34052331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 148
Target Start/End: Complemental strand, 44148757 - 44148724
Alignment:
Q  115 tgatttcctcaaatccataattttctcaaagttt 148  Q
    ||||||||| ||||||||||||||||||||||||    
T  44148757 tgatttccttaaatccataattttctcaaagttt 44148724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 7954985 - 7955033
Alignment:
Q  63 aaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||| || || | |||||| |||||||||||||||||||||||||    
T  7954985 aaaacttatgtttatttccttatgtgctttttgtatggttcttaactaa 7955033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 20184410 - 20184358
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  ||||||| ||||| |||||||||||    
T  20184410 ggagaaaacttaggtacaattccttagctgcttttcgtatgattcttaactaa 20184358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 35665633 - 35665685
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| |||  ||||  ||||||| |||||||||||||||||    
T  35665633 ggagaaaacttaggtacaattgcttaggtgcttttcgtatggttcttaactaa 35665685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 200 - 274
Target Start/End: Complemental strand, 2268190 - 2268116
Alignment:
Q  200 ttgtacctaatttttctccaaaatatataactaacagtcaagttcagtcatatacttatagcattatgaagttac 274  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  2268190 ttgtacctaatttttctccaaaatatataactaacaatcaagttcattcatatacttatagcattatgaagttac 2268116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 57 - 189
Target Start/End: Complemental strand, 16473128 - 16472991
Alignment:
Q  57 atggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaac-----catgatttcctcaaatccataattttctcaaagtttatt 151  Q
    |||||||||||||||||| ||| ||||| |||||||| |||||||||||||||||      |||||||||||||||||||||||||||||||||||| ||    
T  16473128 atggagaaaacttaggtacaattccttagatgcttttcgtatggttcttaactaaaaatatcatgatttcctcaaatccataattttctcaaagtttgtt 16473029  T
Q  152 atattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||||        |||||||||||| |||||||||||||    
T  16473028 atatcaaaaaaatatgtatttttagttaagaaccatac 16472991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 58 - 189
Target Start/End: Complemental strand, 15856015 - 15855879
Alignment:
Q  58 tggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaac-----catgatttcctcaaatccataattttctcaaagtttatta 152  Q
    ||||||||||||||||| ||| ||||| |||||||| |||||||||||||||||      |||||||||||||||||||||||||||||||||||| |||    
T  15856015 tggagaaaacttaggtacaattccttagatgcttttcgtatggttcttaactaaaaatatcatgatttcctcaaatccataattttctcaaagtttgtta 15855916  T
Q  153 tattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    |||        |||||||||||| |||||||||||||    
T  15855915 tatcaaaaaaatatgtatttttagttaagaaccatac 15855879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 35420612 - 35420747
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaac-----catgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| ||||| |||||||| |||||||||||||||||      |||||||||||||||||||||||||||||||||||| ||||    
T  35420612 ggagaaaacttaggtacaattccttagatgcttttcgtatggttcttaactaaaaatatcatgatttcctcaaatccataattttctcaaagtttgttat 35420711  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        |||||||||||| |||||||||||||    
T  35420712 atcaaaaaaatatgtatttttagttaagaaccatac 35420747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 20476602 - 20476467
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaac-----catgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||  ||||||| |||||||||||||||||      |||||||||||||||||||||||||||||||| ||| ||||    
T  20476602 ggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaaattcatcatgatttcctcaaatccataattttctcaaaatttgttat 20476503  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        |||||||||||| |||||||||||||    
T  20476502 atcacaaaaatatgtatttttagttaagaaccatac 20476467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 33629345 - 33629446
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaacta-----accatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||| ||||||| ||||||||||||||||     || ||||||| ||||||||||||||||||||||||||| ||||    
T  33629345 ggagaaaacttaggtacaattccttatgtgcttttggtatggttcttaactaaattcactatgattttctcaaatccataattttctcaaagtttgttat 33629444  T
Q  154 at 155  Q
    ||    
T  33629445 at 33629446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 189
Target Start/End: Original strand, 13754286 - 13754426
Alignment:
Q  54 tatatggagaaaacttaggtataatcccttatatgctttttgtatggttcttaacta-----accatgatttcctcaaatccataattttctcaaagttt 148  Q
    |||| |||||||||||||||| ||| |||||| || |||| ||||| ||||||||||     ||||| |||||||||||| |||||||||||||||||||    
T  13754286 tataaggagaaaacttaggtacaattccttatgtgtttttcgtatgattcttaactaaattcaccataatttcctcaaattcataattttctcaaagttt 13754385  T
Q  149 attatattnnnnnnntatgtatttttaattaagaaccatac 189  Q
      |||||        |||||||||||| |||||||||||||    
T  13754386 gctatatcaaaaaaatatgtatttttagttaagaaccatac 13754426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 1138730 - 1138595
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaacc-----atgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| || ||  ||||||| |||||||||||||||||       ||||||| ||||||||||||||||||||||||||| ||||    
T  1138730 ggagaaaacttaggtacaattccatagctgcttttcgtatggttcttaactaaattcattatgattttctcaaatccataattttctcaaagtttgttat 1138631  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        |||||||||||| |||||||||||||    
T  1138630 atccaaaaaatatgtatttttagttaagaaccatac 1138595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 2268781 - 2268724
Alignment:
Q  54 tatatggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||    
T  2268781 tatatggagaaaacttaggtataatttcttagatgctttttgtatggttcttaactaa 2268724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 189
Target Start/End: Complemental strand, 21262085 - 21261979
Alignment:
Q  88 gctttttgtatggttcttaactaac-----catgatttcctcaaatccataattttctcaaagtttattatattnnnnnnntatgtatttttaattaaga 182  Q
    ||||||||||||||||||||||||      ||||||||||||||||||| |||||||||||||||| ||||||        |||||||||||| ||||||    
T  21262085 gctttttgtatggttcttaactaaattcatcatgatttcctcaaatccacaattttctcaaagtttgttatatccaaaaaatatgtatttttagttaaga 21261986  T
Q  183 accatac 189  Q
    |||||||    
T  21261985 accatac 21261979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 24397278 - 24397346
Alignment:
Q  91 ttttgtatggttcttaactaac----catgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    |||||||||||||||||||||     |||||||||||||||||||||||||||||||||||| ||||||    
T  24397278 ttttgtatggttcttaactaaattcacatgatttcctcaaatccataattttctcaaagtttgttatat 24397346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 188
Target Start/End: Original strand, 21259725 - 21259864
Alignment:
Q  54 tatatggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagttt 148  Q
    |||| |||||||||||| ||| ||| | |||| ||||||| ||||||||||||  |||     ||||||||||||||||  |||||||||||||||||||    
T  21259725 tataaggagaaaacttacgtacaattctttatgtgcttttcgtatggttcttagttaaattcaccatgatttcctcaaaatcataattttctcaaagttt 21259824  T
Q  149 attatattnnnnnnntatgtatttttaattaagaaccata 188  Q
     ||||||        |||||||||||| ||||||||||||    
T  21259825 gttatatccaaaaaatatgtatttttagttaagaaccata 21259864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 19976376 - 19976332
Alignment:
Q  111 accatgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  19976376 accatgatttcctcaaatccataattttctcaaagtttatcatat 19976332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 141
Target Start/End: Original strand, 21591212 - 21591300
Alignment:
Q  58 tggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctc 141  Q
    ||||||||||||||||| ||| |||||  ||||||| |||||||| | ||||||     ||||||||||||||||||||||||||||||    
T  21591212 tggagaaaacttaggtacaattccttaagtgcttttcgtatggttgtgaactaaattcaccatgatttcctcaaatccataattttctc 21591300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 141
Target Start/End: Original strand, 21595329 - 21595417
Alignment:
Q  58 tggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctc 141  Q
    ||||||||||||||||| ||| |||||  ||||||| |||||||| | ||||||     ||||||||||||||||||||||||||||||    
T  21595329 tggagaaaacttaggtacaattccttaagtgcttttcgtatggttgtgaactaaattcaccatgatttcctcaaatccataattttctc 21595417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 154
Target Start/End: Original strand, 37552308 - 37552408
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| | ||   ||||||||||| |||||||||||||     |||||| |||||||||| ||||||||||||||||||| ||||    
T  37552308 ggagaaaacttaggtacaattcattccgtgctttttgtacggttcttaactaaattcaccatgacttcctcaaattcataattttctcaaagtttgttat 37552407  T
Q  154 a 154  Q
    |    
T  37552408 a 37552408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 4266153 - 4266018
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    ||||||||||| |||| ||| |||||  || |||| |||||||||||||||||     || ||||||| |||||||||||||||||| ||||||| |||     
T  4266153 ggagaaaacttcggtacaattccttaggtgtttttcgtatggttcttaactaaattcaccgtgatttcttcaaatccataattttcttaaagtttgttac 4266054  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        |||||||||||| |||||||||||||    
T  4266053 atccaaaaaatatgtatttttagttaagaaccatac 4266018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 12744940 - 12744862
Alignment:
Q  111 accatgatttcctcaaatccataattttctcaaagtttattatattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||        |||||||||||| |||| ||||||||    
T  12744940 accatgatttcctcaaattcataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaaaaaccatac 12744862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 15855843 - 15855895
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| ||||| |||||||| |||||||||||||||||    
T  15855843 ggagaaaacttaggtacaattccttagatgcttttcgtatggttcttaactaa 15855895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 35420783 - 35420731
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| ||||| |||||||| |||||||||||||||||    
T  35420783 ggagaaaacttaggtacaattccttagatgcttttcgtatggttcttaactaa 35420731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 188
Target Start/End: Complemental strand, 735385 - 735313
Alignment:
Q  116 gatttcctcaaatccataattttctcaaagtttattatattnnnnnnntatgtatttttaattaagaaccata 188  Q
    |||||| |||||| ||||||||||||||||||| |||||||       |||||||||||||||||||| ||||    
T  735385 gatttcatcaaattcataattttctcaaagtttgttatattcaagaaatatgtatttttaattaagaatcata 735313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 189
Target Start/End: Complemental strand, 12808079 - 12807947
Alignment:
Q  62 gaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattatatt 156  Q
    ||||||||||||| ||| |||||  || |||| ||||| ||||| |||||     |||||||||||| |||||||||||||| ||||||||| ||||||     
T  12808079 gaaaacttaggtacaattccttaagtgtttttcgtatgattcttgactaaattcaccatgatttccttaaatccataattttttcaaagtttgttatatc 12807980  T
Q  157 nnnnnnntatgtatttttaattaagaaccatac 189  Q
           |||||||||||| |||| ||||||||    
T  12807979 taaaaaatatgtatttttagttaaaaaccatac 12807947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 37655182 - 37655252
Alignment:
Q  89 ctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattata 154  Q
    ||||||||| |||||||||||||     |||||| |||||||||| ||||||||||||||||||| |||||    
T  37655182 ctttttgtacggttcttaactaaattcaccatgacttcctcaaattcataattttctcaaagtttgttata 37655252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 780851 - 780895
Alignment:
Q  111 accatgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    ||||||||||||| |||||||||||||||| ||||||| ||||||    
T  780851 accatgatttccttaaatccataattttcttaaagtttgttatat 780895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 2268850 - 2268818
Alignment:
Q  2 tataaagagagagttgtgtcatttttgtttttc 34  Q
    |||||||||||||||||||||||||||||||||    
T  2268850 tataaagagagagttgtgtcatttttgtttttc 2268818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 8364797 - 8364749
Alignment:
Q  63 aaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||| ||| |||||  |||||||||||||||||||||||||    
T  8364797 aaaacttaggtacaattccttaggtgctttttgtatggttcttaactaa 8364749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 16472959 - 16473007
Alignment:
Q  63 aaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||| ||| ||||| |||||||| |||||||||||||||||    
T  16472959 aaaacttaggtacaattccttagatgcttttcgtatggttcttaactaa 16473007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 35276349 - 35276393
Alignment:
Q  111 accatgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    ||||||||||  |||||||||||||||||| ||||||||||||||    
T  35276349 accatgattttatcaaatccataattttcttaaagtttattatat 35276393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 189
Target Start/End: Original strand, 1456085 - 1456157
Alignment:
Q  117 atttcctcaaatccataattttctcaaagtttattatattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    |||| ||||||||||||||||||||||||||| ||||||        |||||||||||| | |||||||||||    
T  1456085 attttctcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagtcaagaaccatac 1456157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 148
Target Start/End: Original strand, 34513465 - 34513512
Alignment:
Q  101 ttcttaactaaccatgatttcctcaaatccataattttctcaaagttt 148  Q
    ||||||||||  ||||||||| ||||| ||||||||||||||||||||    
T  34513465 ttcttaactactcatgatttcttcaaacccataattttctcaaagttt 34513512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 24397415 - 24397365
Alignment:
Q  61 agaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||| ||| |||||  ||||||| |||||||||||||||||    
T  24397415 agaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaa 24397365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 147
Target Start/End: Original strand, 1384388 - 1384421
Alignment:
Q  114 atgatttcctcaaatccataattttctcaaagtt 147  Q
    |||||||||||||||| |||||||||||||||||    
T  1384388 atgatttcctcaaatctataattttctcaaagtt 1384421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 43539278 - 43539177
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaac-----catgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||| ||||||| ||| |||||  || |||| ||||||| |||||||||      | |||||| || |||||||||||||||||||||||| ||||    
T  43539278 ggagaaaatttaggtacaattccttaggtgtttttcgtatggtccttaactaaattcatcgtgattttcttaaatccataattttctcaaagtttgttat 43539179  T
Q  154 at 155  Q
    ||    
T  43539178 at 43539177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 10132421 - 10132373
Alignment:
Q  63 aaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    ||||||||| || ||| |||||| || ||||||||||||||||||||||    
T  10132421 aaaacttagatacaattccttatgtgttttttgtatggttcttaactaa 10132373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 20476431 - 20476483
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |  || |||||||| |||||||||||||||||    
T  20476431 ggagaaaacttaggtacaattctctagatgcttttcgtatggttcttaactaa 20476483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 58)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 55 - 189
Target Start/End: Original strand, 14387011 - 14387150
Alignment:
Q  55 atatggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagttta 149  Q
    ||||| |||||||||||||| ||| ||||| |||| ||| |||||||||||||||||     ||||||||||||||||||||||||||||||||||||||    
T  14387011 atatgaagaaaacttaggtacaattccttagatgcatttcgtatggttcttaactaaattcaccatgatttcctcaaatccataattttctcaaagttta 14387110  T
Q  150 ttatattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||||||        |||||||||||| |||||||||||||    
T  14387111 ttatatccaaaaaatatgtatttttagttaagaaccatac 14387150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 50627302 - 50627167
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaacta-----accatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||||||||||| ||||||||||||||||     | |||||||||||||||||||||||||||||||||||| ||||    
T  50627302 ggagaaaacttaggtacaattccttatatgcttttcgtatggttcttaactaaaaatatcatgatttcctcaaatccataattttctcaaagtttgttat 50627203  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        |||||||||||| |||||||||||||    
T  50627202 atccaaaaaatatgtatttttagttaagaaccatac 50627167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 19954911 - 19955046
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||| ||||||| |||| ||||||||||||     ||||||||||||||||||||||||||||||||||||| ||||    
T  19954911 ggagaaaacttaggtacaattccttatgtgcttttcgtatagttcttaactaaattcaccatgatttcctcaaatccataattttctcaaagtttgttat 19955010  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        |||||||||||| |||||||||||||    
T  19955011 atccaaaaaatatgtatttttagttaagaaccatac 19955046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 59 - 148
Target Start/End: Complemental strand, 36880682 - 36880588
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagttt 148  Q
    |||||||||||||||| ||| ||||| |||||||| |||||||||||||||||     |||||||||||||||||||||||||||||||||||||    
T  36880682 ggagaaaacttaggtacaattccttagatgcttttcgtatggttcttaactaaaaataccatgatttcctcaaatccataattttctcaaagttt 36880588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 60 - 189
Target Start/End: Complemental strand, 1387948 - 1387814
Alignment:
Q  60 gagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattata 154  Q
    ||||||| ||||||| ||| |||||  ||||||| |||||||||||||||||     ||||||||||||||||| |||||||||||||||||||||||||    
T  1387948 gagaaaatttaggtacaattccttaggtgcttttcgtatggttcttaactaaagataccatgatttcctcaaattcataattttctcaaagtttattata 1387849  T
Q  155 ttnnnnnnntatgtatttttaattaagaaccatac 189  Q
    |        |||||||||||| |||||||||||||    
T  1387848 tccaaaaaatatgtatttttagttaagaaccatac 1387814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 61 - 189
Target Start/End: Complemental strand, 5189638 - 5189505
Alignment:
Q  61 agaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    |||||| ||||||| ||| ||||| |||||||| |||||||||||||||||     |||||||||||| |||||||||||||||||||||||| ||||||    
T  5189638 agaaaatttaggtacaattccttagatgcttttcgtatggttcttaactaaattcaccatgatttccttaaatccataattttctcaaagtttgttatat 5189539  T
Q  156 tnnnnnnntatgtatttttaattaagaaccatac 189  Q
            |||||||||||| |||||||||||||    
T  5189538 ccaaaaaatatgtatttttagttaagaaccatac 5189505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 27240924 - 27241059
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||  ||||||| |||||||||||||||||     ||||||||| ||||||||||||||||||||||||||| ||||    
T  27240924 ggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaaattcaccatgattttctcaaatccataattttctcaaagtttgttat 27241023  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        ||| |||||||| |||||||||||||    
T  27241024 atccaaaaaatatatatttttagttaagaaccatac 27241059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 60 - 189
Target Start/End: Original strand, 3607730 - 3607864
Alignment:
Q  60 gagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaac-----catgatttcctcaaatccataattttctcaaagtttattata 154  Q
    ||||||| ||||||| |||  ||||  |||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||| |||||    
T  3607730 gagaaaatttaggtagaatttcttaggtgctttttgtatggttcttaactaaattcatcatgatttcctcaaatccataattttctcaaagtttgttata 3607829  T
Q  155 ttnnnnnnntatgtatttttaattaagaaccatac 189  Q
    |        |||||||||||| |||||||||||||    
T  3607830 tccaaaaaatatgtatttttagttaagaaccatac 3607864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 27926248 - 27926351
Alignment:
Q  56 tatggagaaaacttaggtataatcccttatatgctttttgtatggttcttaacta-----accatgatttcctcaaatccataattttctcaaagtttat 150  Q
    ||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||     ||  |||||||||| ||||||||||||||||||||||| |    
T  27926248 tatggagaaaacttaggtataattccttatgtgcttttcgtatggttcttaactaaattcactgtgatttcctc-aatccataattttctcaaagtttgt 27926346  T
Q  151 tatat 155  Q
    |||||    
T  27926347 tatat 27926351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 57 - 155
Target Start/End: Original strand, 9978049 - 9978152
Alignment:
Q  57 atggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttatt 151  Q
    |||||||||| ||||||| ||| |||||| ||||||| ||||| |||||||||||     | ||||||||||||||||||||||||||||||||||| ||    
T  9978049 atggagaaaatttaggtacaattccttatgtgcttttcgtatgattcttaactaaattcactatgatttcctcaaatccataattttctcaaagtttgtt 9978148  T
Q  152 atat 155  Q
    ||||    
T  9978149 atat 9978152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 2854532 - 2854667
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| ||||| || ||||| |||||||||||||||||     | ||||||||||||||| ||||||||||||||||||| ||||    
T  2854532 ggagaaaacttaggtacaattccttagatacttttcgtatggttcttaactaaattcactatgatttcctcaaattcataattttctcaaagtttgttat 2854631  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        ||| |||||||| |||||||||||||    
T  2854632 atccaaaaaatatatatttttagttaagaaccatac 2854667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 23698502 - 23698637
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| ||||| || ||||| |||||||||||||||||     | ||||||||||||||| ||||||||||||||||||| ||||    
T  23698502 ggagaaaacttaggtacaattccttagatacttttcgtatggttcttaactaaattcactatgatttcctcaaattcataattttctcaaagtttgttat 23698601  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        ||| |||||||| |||||||||||||    
T  23698602 atccaaaaaatatatatttttagttaagaaccatac 23698637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 189
Target Start/End: Original strand, 19796982 - 19797116
Alignment:
Q  60 gagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattata 154  Q
    ||||||||||||||| |||  ||||  ||||||| |||||||| ||||||||     ||||||||||||||||||||||||||| ||||||||| |||||    
T  19796982 gagaaaacttaggtacaatttcttaggtgcttttcgtatggtttttaactaaaaataccatgatttcctcaaatccataattttttcaaagtttgttata 19797081  T
Q  155 ttnnnnnnntatgtatttttaattaagaaccatac 189  Q
    |        |||||||||||| |||||||||||||    
T  19797082 tccaaaaaatatgtatttttagttaagaaccatac 19797116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 40647289 - 40647188
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||  ||||||| ||||| || ||||||||     ||||||||||||||||||||||||||||||||||||| ||||    
T  40647289 ggagaaaacttaggtacaattccttaggtgcttttcgtatgatttttaactaaattcaccatgatttcctcaaatccataattttctcaaagtttgttat 40647190  T
Q  154 at 155  Q
    ||    
T  40647189 at 40647188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 47940570 - 47940671
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| |||  ||||  ||||||| |||||||||||||||||     ||||||||||||| ||||||||||||||||||||||| ||||    
T  47940570 ggagaaaacttaggtacaatttcttaggtgcttttcgtatggttcttaactaaattcaccatgatttcctcgaatccataattttctcaaagtttgttat 47940669  T
Q  154 at 155  Q
    ||    
T  47940670 at 47940671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 155
Target Start/End: Complemental strand, 15324796 - 15324697
Alignment:
Q  61 agaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    |||||| ||| ||| ||| |||||| ||||||| |||||||||||||||||     | ||||||||||||||||||||||||||||||||||| ||||||    
T  15324796 agaaaatttatgtacaattccttatgtgcttttcgtatggttcttaactaaattcactatgatttcctcaaatccataattttctcaaagtttgttatat 15324697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 42561295 - 42561430
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    ||||||| |||| ||| ||| |||||  ||||||| |||||||||||||||||     |||||||||| ||| |||||||||||||||||||||| ||||    
T  42561295 ggagaaatcttaagtacaattccttaggtgcttttcgtatggttcttaactaaattcaccatgatttcttcatatccataattttctcaaagtttgttat 42561394  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        |||||||||||| |||||||||||||    
T  42561395 atccaaaaaatatgtatttttagttaagaaccatac 42561430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 26208596 - 26208495
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||| ||||||| |||||  ||||||| |||||||||| ||||||     |||| ||||| |||||||||||||||||||||||||| ||||    
T  26208596 ggagaaaacttatgtataattccttaggtgcttttcgtatggttctgaactaaattcaccataatttcttcaaatccataattttctcaaagtttgttat 26208497  T
Q  154 at 155  Q
    ||    
T  26208496 at 26208495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 51276695 - 51276796
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaacc-----atgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||| |||||||||||  | ||  ||||||| |||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  51276695 ggagaaaatttaggtataatttcataggtgcttttcgtatggttcttaactaaattcattatgatttcctcaaatccataattttctcaaagtttattat 51276794  T
Q  154 at 155  Q
    ||    
T  51276795 at 51276796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 155
Target Start/End: Complemental strand, 6079526 - 6079454
Alignment:
Q  88 gctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    |||||| |||||||||||||||||     ||||||||||||||||||||||||||||||||||||| ||||||    
T  6079526 gcttttcgtatggttcttaactaaattcaccatgatttcctcaaatccataattttctcaaagtttgttatat 6079454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 189
Target Start/End: Complemental strand, 27670316 - 27670179
Alignment:
Q  58 tggagaaaacttaggt-ataatcccttatatgctttttgtatggttcttaactaac-----catgatttcctcaaatccataattttctcaaagtttatt 151  Q
    |||||||||||||||  | ||| |||||| ||||||| |||||||| ||||||||      ||||||||||| |||||||||||||||||||||||| ||    
T  27670316 tggagaaaacttagggcacaattccttatgtgcttttcgtatggtttttaactaaattcatcatgatttccttaaatccataattttctcaaagtttttt 27670217  T
Q  152 atattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    |||||       |||||||||||| ||||||| |||||    
T  27670216 atattcaaaaaatatgtatttttagttaagaatcatac 27670179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 48954214 - 48954349
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||  | |||||  ||||||||||||||||     | ||||||||||||||| ||||||||||||||||||| ||||    
T  48954214 ggagaaaacttaggtacaattccttaggtacttttcatatggttcttaactaaattcactatgatttcctcaaattcataattttctcaaagtttgttat 48954313  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        ||| |||||||| |||||||||||||    
T  48954314 atccaaaaaatatatatttttagttaagaaccatac 48954349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 9895367 - 9895289
Alignment:
Q  111 accatgatttcctcaaatccataattttctcaaagtttattatattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||        |||||||||||| |||||||||||||    
T  9895367 accatgatttcctcaaatacataattttctcaaagtttgttatatcaaaaaaatatgtatttttagttaagaaccatac 9895289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 63 - 155
Target Start/End: Original strand, 27928302 - 27928398
Alignment:
Q  63 aaaacttaggtataatcccttatatgctttttgtatggttcttaacta-----accatgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    ||||||||| || ||| |||||| ||||||||||||||||||||||||     ||  |||||||||| ||||||||||||||||||||||| ||||||    
T  27928302 aaaacttagatacaattccttatgtgctttttgtatggttcttaactaaattcactgtgatttcctc-aatccataattttctcaaagtttgttatat 27928398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 51789597 - 51789698
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||  || |||| |||||||| ||||||||     ||||||||||||||| ||||||||||||||||||| | ||||    
T  51789597 ggagaaaacttaggtacaattccttaggtgattttcgtatggtttttaactaaattcaccatgatttcctcaattccataattttctcaaagtatgttat 51789696  T
Q  154 at 155  Q
    ||    
T  51789697 at 51789698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 147
Target Start/End: Original strand, 39015243 - 39015286
Alignment:
Q  104 ttaactaaccatgatttcctcaaatccataattttctcaaagtt 147  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  39015243 ttaactaaccatgatttcttcaaatccataattttctcaaagtt 39015286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 48645073 - 48645145
Alignment:
Q  113 catgatttcctcaaatccataattttctcaaagtttattatattnnnnnnntatgtatttttaattaagaacc 185  Q
    |||||||||||||||||||||||||||||||||||| ||||||        |||||||||||| |||||||||    
T  48645073 catgatttcctcaaatccataattttctcaaagtttgttatatctaaaaaatatgtatttttagttaagaacc 48645145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 155
Target Start/End: Original strand, 49284298 - 49284395
Alignment:
Q  63 aaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    |||||||||||| |||  ||||  || ||||||||||||||||||||||     ||||||||| || |||||||||||||| ||||||||| ||||||    
T  49284298 aaaacttaggtacaatttcttagttgttttttgtatggttcttaactaaattcaccatgattttcttaaatccataattttttcaaagtttgttatat 49284395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 957703 - 957659
Alignment:
Q  111 accatgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||    
T  957703 accatgattttctcaaatccataattttctcaaagtttgttatat 957659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 111 - 155
Target Start/End: Original strand, 4299449 - 4299493
Alignment:
Q  111 accatgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||    
T  4299449 accattatttcctcaaatccataattttctcaaagtttgttatat 4299493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 63 - 155
Target Start/End: Complemental strand, 28244119 - 28244028
Alignment:
Q  63 aaaacttaggtataatcccttatatgctttttgtatggttcttaactaaccatgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    ||||||| |||| |||  |||||||| |||||||||  |||||||||||   | ||||||| |||||||||||||||||||||||| ||||||    
T  28244119 aaaacttcggtacaatttcttatatgttttttgtataattcttaactaaat-tcatttccttaaatccataattttctcaaagtttgttatat 28244028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 106 - 154
Target Start/End: Original strand, 36007872 - 36007920
Alignment:
Q  106 aactaaccatgatttcctcaaatccataattttctcaaagtttattata 154  Q
    ||||| ||||||||||||||||| ||||||||||||||||||| |||||    
T  36007872 aactatccatgatttcctcaaatacataattttctcaaagtttgttata 36007920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 42561466 - 42561414
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  |||||||||||||||||||||||||    
T  42561466 ggagaaaacttaggtacaattccttaggtgctttttgtatggttcttaactaa 42561414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 50627131 - 50627183
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| ||||| |||||||| |||||||||||||||||    
T  50627131 ggagaaaacttaggtacaattccttagatgcttttcgtatggttcttaactaa 50627183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 51789766 - 51789714
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| ||||| |||||||| |||||||||||||||||    
T  51789766 ggagaaaacttaggtacaattccttaaatgcttttcgtatggttcttaactaa 51789714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 156
Target Start/End: Complemental strand, 29598434 - 29598392
Alignment:
Q  114 atgatttcctcaaatccataattttctcaaagtttattatatt 156  Q
    |||||||||| |||||||||||||||||||||||| |||||||    
T  29598434 atgatttccttaaatccataattttctcaaagtttgttatatt 29598392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 50162708 - 50162658
Alignment:
Q  61 agaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||| ||| |||||  |||||||||||||||||||||||||    
T  50162708 agaaaacttaggtacaattccttaggtgctttttgtatggttcttaactaa 50162658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 23698678 - 23698621
Alignment:
Q  54 tatatggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    ||||||||||||||||||||| ||| |||||  | ||||| |||||||||||||||||    
T  23698678 tatatggagaaaacttaggtacaattccttaggtccttttcgtatggttcttaactaa 23698621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 25298023 - 25297966
Alignment:
Q  54 tatatggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    ||||||||||||||||||||| ||| |||||  || |||| |||||||||||||||||    
T  25298023 tatatggagaaaacttaggtacaattccttaggtgtttttcgtatggttcttaactaa 25297966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 50162538 - 50162639
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||  |  ||||||||||||| |||| |||     || |||||| |||||||| |||||||||||||||||| ||||    
T  50162538 ggagaaaacttaggtacaattccttaggtattttttgtatggtttttaattaaattcaccgtgattttctcaaatctataattttctcaaagtttgttat 50162637  T
Q  154 at 155  Q
    ||    
T  50162638 at 50162639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 2302517 - 2302481
Alignment:
Q  111 accatgatttcctcaaatccataattttctcaaagtt 147  Q
    |||||||||||||||||| ||||||||||||||||||    
T  2302517 accatgatttcctcaaattcataattttctcaaagtt 2302481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 5189469 - 5189521
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  ||||||| |||||||||||||||||    
T  5189469 ggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaa 5189521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 19797152 - 19797100
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  ||||||| |||||||||||||||||    
T  19797152 ggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaa 19797100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 19955082 - 19955030
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  | |||||||||||||||||||||||    
T  19955082 ggagaaaacttaggtacaattccttaggtactttttgtatggttcttaactaa 19955030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 49285146 - 49285094
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  ||||||| |||||||||||||||||    
T  49285146 ggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaa 49285094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 189
Target Start/End: Original strand, 2125069 - 2125205
Alignment:
Q  58 tggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttatta 152  Q
    ||||||||| |||| || |||  ||||| ||||||| |||||||||||||||||     |||||||||  | ||||  |||||||||||||||||| |||    
T  2125069 tggagaaaatttagttacaatttcttatgtgcttttcgtatggttcttaactaaattcaccatgatttttttaaatttataattttctcaaagtttgtta 2125168  T
Q  153 tattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    |||        |||||||||||| |||||||| ||||    
T  2125169 tatcaaaaaaatatgtatttttagttaagaactatac 2125205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 9978222 - 9978171
Alignment:
Q  60 gagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    ||||||||||||||| ||| |||||  ||||||| |||||||||||||||||    
T  9978222 gagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaa 9978171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 27926425 - 27926371
Alignment:
Q  57 atggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||| ||| ||| |||||  ||||||| |||||||||||||||||    
T  27926425 atggagaaaacttatgtacaattccttaggtgcttttcgtatggttcttaactaa 27926371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 155
Target Start/End: Original strand, 50856320 - 50856422
Alignment:
Q  58 tggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttatta 152  Q
    |||| |||||||||||| ||| | |||  ||||||| ||||| |||||| ||||     |||| |||||||||| ||||||||||||||||| ||| |||    
T  50856320 tggataaaacttaggtaaaattctttaggtgcttttcgtatgattcttagctaaattcaccattatttcctcaagtccataattttctcaaaatttgtta 50856419  T
Q  153 tat 155  Q
    |||    
T  50856420 tat 50856422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 111
Target Start/End: Complemental strand, 3607905 - 3607848
Alignment:
Q  54 tatatggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||| |||||||||||||||| |||  ||||  ||||||| |||||||||||||||||    
T  3607905 tataaggagaaaacttaggtacaatttcttaggtgcttttcgtatggttcttaactaa 3607848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 2854703 - 2854651
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  | ||||| |||||||||||||||||    
T  2854703 ggagaaaacttaggtacaattccttaggtccttttcgtatggttcttaactaa 2854651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 4299566 - 4299514
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  || |||| |||||||||||||||||    
T  4299566 ggagaaaacttaggtacaattccttaggtgtttttcgtatggttcttaactaa 4299514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 15324626 - 15324678
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| |||  ||||  ||||||| |||||||||||||||||    
T  15324626 ggagaaaacttaggtacaatttcttaggtgcttttcgtatggttcttaactaa 15324678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 18651310 - 18651350
Alignment:
Q  114 atgatttcctcaaatccataattttctcaaagtttattata 154  Q
    ||||||||| ||||||||||||||||||||| ||| |||||    
T  18651310 atgatttccccaaatccataattttctcaaaatttgttata 18651350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 22339036 - 22339076
Alignment:
Q  106 aactaaccatgatttcctcaaatccataattttctcaaagt 146  Q
    |||| ||||||||||| |||||||||| |||||||||||||    
T  22339036 aactcaccatgatttcatcaaatccatcattttctcaaagt 22339076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 29598508 - 29598456
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| | |||  | |||||||||||||||||||||||    
T  29598508 ggagaaaacttaggtacaattcgttaggtactttttgtatggttcttaactaa 29598456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 47940742 - 47940690
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  || |||| |||||||||||||||||    
T  47940742 ggagaaaacttaggtacaattccttaggtgtttttcgtatggttcttaactaa 47940690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #58
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 48954385 - 48954333
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  | ||||| |||||||||||||||||    
T  48954385 ggagaaaacttaggtacaattccttaggtccttttcgtatggttcttaactaa 48954333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 14393735 - 14393634
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||||||| |||||  |||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||| ||||    
T  14393735 ggagaaaacttaggtataattccttaggtgctttttgtatggttcttaactaaattcaccatgatttcctcaaatccataattttctcaaagtttgttat 14393636  T
Q  154 at 155  Q
    ||    
T  14393635 at 14393634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 11687143 - 11687278
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaac-----catgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| ||||| |||||||| |||||||||||||||||      |||||||||||||||||||||||||||||||||||| ||||    
T  11687143 ggagaaaacttaggtacaattccttagatgcttttcgtatggttcttaactaaaaatatcatgatttcctcaaatccataattttctcaaagtttgttat 11687242  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        |||||||||||| |||||||||||||    
T  11687243 atcaaaaaaatatgtatttttagttaagaaccatac 11687278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 15546803 - 15546668
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaacta-----accatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||  ||||||| ||||||||||||| ||     |||||||||||||||||||||||||||||||||||||| ||||    
T  15546803 ggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaattaaatttaccatgatttcctcaaatccataattttctcaaagtttgttat 15546704  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        |||||||||||| |||||||||||||    
T  15546703 atccaaaaaatatgtatttttagttaagaaccatac 15546668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 21379941 - 21380076
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaacta-----accatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||  ||||||| ||||||||||||||||     |||||||||||||||||| |||||||||||||| |||| ||||    
T  21379941 ggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaaattcaccatgatttcctcaaattcataattttctcaatgtttgttat 21380040  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        |||||||||||| |||||||||||||    
T  21380041 atccaaaaaatatgtatttttagttaagaaccatac 21380076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 155
Target Start/End: Complemental strand, 7808779 - 7808679
Alignment:
Q  60 gagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattata 154  Q
    ||||||||||||||| ||| |||||  ||||||| |||||||||||||||||     |||||||||||||||||| |||||||||||||||||| |||||    
T  7808779 gagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaaaaataccatgatttcctcaaatctataattttctcaaagtttgttata 7808680  T
Q  155 t 155  Q
    |    
T  7808679 t 7808679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 8091233 - 8091098
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| |||  ||||  ||||||| |||||||||||||||||     || ||||||||| |||||||||||||||||||||||| ||||    
T  8091233 ggagaaaacttaggtacaattgcttaggtgcttttcgtatggttcttaactaaattcaccgtgatttccttaaatccataattttctcaaagtttgttat 8091134  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        |||||||||||| |||||||||||||    
T  8091133 atccaaaaaatatgtatttttagttaagaaccatac 8091098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 155
Target Start/End: Original strand, 17367062 - 17367158
Alignment:
Q  57 atggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaaccatgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    |||||||||||||||||| ||| |||||| | ||||| ||||| ||||||||||   |||||||| |||||| ||||||||||||||||||| ||||||    
T  17367062 atggagaaaacttaggtacaattccttatgttcttttcgtatgattcttaacta--gatgatttcatcaaattcataattttctcaaagtttgttatat 17367158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 885556 - 885421
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaac-----catgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||  |||||||  |||| |||||||||||      |||||||| ||||||||||||||||||||||||||| ||||    
T  885556 ggagaaaacttaggtacaattccttaggtgcttttcctatgattcttaactaaattcatcatgattttctcaaatccataattttctcaaagtttgttat 885457  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        |||||||||||| |||||||||||||    
T  885456 atccaaaaaatatgtatttttagttaagaaccatac 885421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 3369099 - 3369021
Alignment:
Q  111 accatgatttcctcaaatccataattttctcaaagtttattatattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||       |||||||||||| |||||||||||||    
T  3369099 accatgatttcctcaaattcataattttctcaaagtttgttatattcaaaaaatatgtatttttagttaagaaccatac 3369021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 4890480 - 4890581
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| |||  ||||  || |||| |||||||||||||||||     ||||||||||||||||| ||||||||||||||||||| ||||    
T  4890480 ggagaaaacttaggtacaatttcttaggtgtttttcgtatggttcttaactaaatttaccatgatttcctcaaattcataattttctcaaagtttgttat 4890579  T
Q  154 at 155  Q
    ||    
T  4890580 at 4890581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 155
Target Start/End: Complemental strand, 4239020 - 4238924
Alignment:
Q  64 aaacttaggtataatcccttatatgctttttgtatggttcttaacta-----accatgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    ||||||||||| ||| |||| | ||||||||||||||||||||| ||     |||||||||| ||||||||| ||||||||||||||||| ||||||    
T  4239020 aaacttaggtacaattccttctgtgctttttgtatggttcttaattaaattcaccatgattttctcaaatccttaattttctcaaagtttgttatat 4238924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 13172574 - 13172708
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaacc----atgatttcctcaaatccataattttctcaaagtttattata 154  Q
    |||||||||||||||| ||| |  || ||| |||| |||||||||||||||||      || |||||||||||||||||||||||||||||||| |||||    
T  13172574 ggagaaaacttaggtacaattctctagatgtttttcgtatggttcttaactaaattcatatcatttcctcaaatccataattttctcaaagtttgttata 13172673  T
Q  155 ttnnnnnnntatgtatttttaattaagaaccatac 189  Q
    |        |||||||||||| |||||||||||||    
T  13172674 tccaaaaaatatgtatttttacttaagaaccatac 13172708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 155
Target Start/End: Complemental strand, 13439836 - 13439766
Alignment:
Q  90 tttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    |||| |||||||||||||||||     ||||||||||||||||||||||||||||||||||||| ||||||    
T  13439836 ttttcgtatggttcttaactaaattcaccatgatttcctcaaatccataattttctcaaagtttgttatat 13439766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 189
Target Start/End: Complemental strand, 20501849 - 20501742
Alignment:
Q  87 tgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattatattnnnnnnntatgtatttttaattaag 181  Q
    ||||||| |||||||||||||||||     |||||||||| ||||||||||||||||||| |||||| ||||||        |||||||||||| |||||    
T  20501849 tgcttttcgtatggttcttaactaaaaataccatgatttcttcaaatccataattttctcgaagtttgttatatccaaaaaatatgtatttttagttaag 20501750  T
Q  182 aaccatac 189  Q
    ||||||||    
T  20501749 aaccatac 20501742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 57 - 189
Target Start/End: Original strand, 18998115 - 18998252
Alignment:
Q  57 atggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttatt 151  Q
    |||||||||||||||||| ||| |||||  || |||| ||| | |||||||||||     ||||||||||||| ||||||||||||||||||||||| ||    
T  18998115 atggagaaaacttaggtacaattccttaggtgtttttcgtacg-ttcttaactaaattcaccatgatttcctcgaatccataattttctcaaagtttgtt 18998213  T
Q  152 atat-tnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||||         ||||||||||||||||||||||||||    
T  18998214 atatcaaaaaaaatatgtatttttaattaagaaccatac 18998252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 153
Target Start/End: Complemental strand, 29609168 - 29609073
Alignment:
Q  63 aaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||| ||| ||| ||||| |||||||| |||||||| ||||||||     || ||||||||| |||||||||||||||||||||||| ||||    
T  29609168 aaaacttacgtacaattccttagatgcttttcgtatggtttttaactaaattcaccgtgatttccttaaatccataattttctcaaagtttgttat 29609073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 11687315 - 11687262
Alignment:
Q  58 tggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    ||||||||||||||||| ||| ||||| |||||||| |||||||||||||||||    
T  11687315 tggagaaaacttaggtacaattccttagatgcttttcgtatggttcttaactaa 11687262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 885385 - 885437
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  |||||||||||||||||||||||||    
T  885385 ggagaaaacttaggtacaattccttaggtgctttttgtatggttcttaactaa 885437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 7187710 - 7187633
Alignment:
Q  82 ttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattata 154  Q
    |||| |||||||||||| ||| ||||||||     ||||||||| ||||||| |||| ||||||||||||||||||||    
T  7187710 ttatgtgctttttgtatagttattaactaaataaaccatgatttactcaaattcatatttttctcaaagtttattata 7187633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 6433690 - 6433742
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    ||||||||||||||||||||  ||||  ||||||| |||||||||||||||||    
T  6433690 ggagaaaacttaggtataatttcttaggtgcttttcgtatggttcttaactaa 6433742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 15546632 - 15546684
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  || ||||||||||||||||||||||    
T  15546632 ggagaaaacttaggtacaattccttagttgttttttgtatggttcttaactaa 15546684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 21380112 - 21380060
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  ||||||| |||||||||||||||||    
T  21380112 ggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaa 21380060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 31764356 - 31764419
Alignment:
Q  90 tttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagttt 148  Q
    ||||||||||||||||||||||     |||| |||| ||||||| |||||||||||||||||||    
T  31764356 tttttgtatggttcttaactaaattcaccattattttctcaaattcataattttctcaaagttt 31764419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 3368980 - 3369037
Alignment:
Q  54 tatatggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    ||||||||||||||||  ||| ||| |||||  ||||||| |||||||||||||||||    
T  3368980 tatatggagaaaacttgagtacaattccttaggtgcttttcgtatggttcttaactaa 3369037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 4890652 - 4890600
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||| ||||||| ||| |||||  ||||||| |||||||||||||||||    
T  4890652 ggagaaaatttaggtacaattccttaggtgcttttcgtatggttcttaactaa 4890600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 530669 - 530804
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaacta-----accatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||  ||||||||||||||||||||||||     ||||| |||||||||||||||||||||||||||||||| ||||    
T  530669 ggagaaaacttaggtacaattccttaggtgctttttgtatggttcttaactaaattcaccatcatttcctcaaatccataattttctcaaagtttgttat 530768  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        |||||||||||| |||||||||||||    
T  530769 atccaaaaaatatgtatttttagttaagaaccatac 530804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 4552956 - 4552855
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaacta-----accatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| ||||||||||||| |||||||||||||||||     | |||||||||||||||||||||||||||||||||||| ||||    
T  4552956 ggagaaaacttaggtacaattccttatatgctttctgtatggttcttaactaaattcatcatgatttcctcaaatccataattttctcaaagtttgttat 4552857  T
Q  154 at 155  Q
    ||    
T  4552856 at 4552855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 42274492 - 42274593
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| ||||| |||||||| |||||||||||||||||     ||||||||||||||||||||||||||||||||||||| ||||    
T  42274492 ggagaaaacttaggtacaattccttagatgcttttcgtatggttcttaactaaattcaccatgatttcctcaaatccataattttctcaaagtttgttat 42274591  T
Q  154 at 155  Q
    ||    
T  42274592 at 42274593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 18417828 - 18417693
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaacta-----accatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||  ||||||||||||||||||||| ||     |||||||||||||||||||||||||||||||||||||| ||||    
T  18417828 ggagaaaacttaggtacaattccttaggtgctttttgtatggttcttaattaaattcaccatgatttcctcaaatccataattttctcaaagtttgttat 18417729  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        ||| |||||||| |||||||||||||    
T  18417728 atccaaaaaatatatatttttagttaagaaccatac 18417693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 59 - 188
Target Start/End: Complemental strand, 55107695 - 55107561
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||  ||||||||||||||||||| |||||     ||||||||||||||||| ||||||||||||||||||| ||||    
T  55107695 ggagaaaacttaggtacaattccttaggtgctttttgtatggttctttactaaatttaccatgatttcctcaaatgcataattttctcaaagtttgttat 55107596  T
Q  154 attnnnnnnntatgtatttttaattaagaaccata 188  Q
    ||        |||||||||||| ||||||||||||    
T  55107595 atccaaataatatgtatttttagttaagaaccata 55107561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 60 - 155
Target Start/End: Original strand, 32318721 - 32318821
Alignment:
Q  60 gagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattata 154  Q
    ||||||||||||||| ||| |||||| ||||||| |||||||||||||||||     |||||||||||||| |||||||||||||||||||||| |||||    
T  32318721 gagaaaacttaggtacaattccttatgtgcttttcgtatggttcttaactaaattcaccatgatttcctcagatccataattttctcaaagtttgttata 32318820  T
Q  155 t 155  Q
    |    
T  32318821 t 32318821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 1299083 - 1298948
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||  |||||||  ||||||||||||||||     ||||||||| ||||||||||||||||||||||||||| ||||    
T  1299083 ggagaaaacttaggtacaattccttaggtgcttttcttatggttcttaactaaattcaccatgattttctcaaatccataattttctcaaagtttgttat 1298984  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        |||||||||||| |||||||||||||    
T  1298983 atccaaaaaatatgtatttttagttaagaaccatac 1298948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 13204548 - 13204413
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||| | ||||| |||||||| ||||||||     |||||||||||||||||||||||||||| |||||||| ||||    
T  13204548 ggagaaaacttaggtacaattccttatgtacttttcgtatggtttttaactaaattcaccatgatttcctcaaatccataattttcacaaagtttgttat 13204449  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        |||||||||||| |||||||||||||    
T  13204448 atccaaaaaatatgtatttttagttaagaaccatac 13204413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 21048705 - 21048839
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| | ||| |||||||| |||||||||||||||||     |||||||||||||||||||||||||||||| |||||| ||||    
T  21048705 ggagaaaacttaggtacaattcgttagatgcttttcgtatggttcttaactaaattcaccatgatttcctcaaatccataattttctcgaagtttgttat 21048804  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    | |       |||||||||||| |||||||||||||    
T  21048805 a-tcaaaaaatatgtatttttagttaagaaccatac 21048839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 24915794 - 24915895
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||  ||||||| |||||||||||||||||     ||||||||| ||||||||||||||||||||||||||| ||||    
T  24915794 ggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaaattcaccatgattttctcaaatccataattttctcaaagtttgttat 24915893  T
Q  154 at 155  Q
    ||    
T  24915894 at 24915895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 189
Target Start/End: Original strand, 20435138 - 20435275
Alignment:
Q  57 atggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaac-----catgatttcctcaaatccataattttctcaaagtttatt 151  Q
    ||||||||||||||  || ||| ||||| |||||||| |||||||||||||||||      ||||||||||||||||||||||||||||| |||||| ||    
T  20435138 atggagaaaacttatatacaattccttagatgcttttcgtatggttcttaactaaattcatcatgatttcctcaaatccataattttctcgaagtttgtt 20435237  T
Q  152 atattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||||        |||||||||||| |||||||||||||    
T  20435238 atatccaaaaaatatgtatttttagttaagaaccatac 20435275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 27434785 - 27434680
Alignment:
Q  55 atatggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagttta 149  Q
    |||||||||||||||| ||| ||| |||||  ||||||| |||||||||||||||||     |||| |||||||||||| |||||||||||||||||||     
T  27434785 atatggagaaaacttaagtacaattccttaggtgcttttcgtatggttcttaactaaatttaccataatttcctcaaattcataattttctcaaagtttg 27434686  T
Q  150 ttatat 155  Q
    ||||||    
T  27434685 ttatat 27434680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 155
Target Start/End: Original strand, 24969543 - 24969642
Alignment:
Q  61 agaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    |||||||||||||| ||| | |||  ||||||| |||||||||||||||||     ||||||||||||||||| ||||||||||||||||||| ||||||    
T  24969543 agaaaacttaggtacaattctttaggtgcttttcgtatggttcttaactaaattcaccatgatttcctcaaattcataattttctcaaagtttgttatat 24969642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 189
Target Start/End: Complemental strand, 35360816 - 35360712
Alignment:
Q  90 tttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattatattnnnnnnntatgtatttttaattaagaac 184  Q
    |||| |||||||||||||||||     |||||||||||| |||||||||||||||||||||||| ||||||        |||||||||||| ||||||||    
T  35360816 ttttcgtatggttcttaactaaattcaccatgatttccttaaatccataattttctcaaagtttgttatatctaaaaaatatgtatttttagttaagaac 35360717  T
Q  185 catac 189  Q
    |||||    
T  35360716 catac 35360712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 52824347 - 52824275
Alignment:
Q  117 atttcctcaaatccataattttctcaaagtttattatattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    |||||||||||||||||||||||||||||||||||||||        |||||||||||| |||||||||||||    
T  52824347 atttcctcaaatccataattttctcaaagtttattatatctaaaaaatatgtatttttagttaagaaccatac 52824275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 4895086 - 4895008
Alignment:
Q  111 accatgatttcctcaaatccataattttctcaaagtttattatattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||       |||||||||||| |||||||| ||||    
T  4895086 accatgatttcctcaaattcataattttctcaaagtttgttatattcaaaaaatatgtatttttagttaagaactatac 4895008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 23928568 - 23928668
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||  || |||| ||||| |||||||||||     ||||||||||||||||||||||||||||||||| ||| ||||    
T  23928568 ggagaaaacttaggtacaattccttag-tgtttttcgtatgattcttaactaaattcaccatgatttcctcaaatccataattttctcaaaatttgttat 23928666  T
Q  154 at 155  Q
    ||    
T  23928667 at 23928668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 109 - 154
Target Start/End: Complemental strand, 56552177 - 56552132
Alignment:
Q  109 taaccatgatttcctcaaatccataattttctcaaagtttattata 154  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  56552177 taaccatgatttcctcaaatccataattttctcaaagtttgttata 56552132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 189
Target Start/End: Original strand, 4688248 - 4688383
Alignment:
Q  60 gagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattata 154  Q
    ||||||||||||||| |||  ||||  ||||||| |||||||||||||||||     |  |||||||||||||| || |||||||||||||||| |||||    
T  4688248 gagaaaacttaggtacaatttcttaggtgcttttcgtatggttcttaactaaattcactgtgatttcctcaaattcacaattttctcaaagtttgttata 4688347  T
Q  155 t-tnnnnnnntatgtatttttaattaagaaccatac 189  Q
    |         ||||||||||||||||||||||||||    
T  4688348 tccaaaaaaatatgtatttttaattaagaaccatac 4688383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 155
Target Start/End: Original strand, 55049399 - 55049501
Alignment:
Q  58 tggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttatta 152  Q
    ||||||||||||| ||| ||| |||||  ||||||| |||| ||||||||||||     | |||||||||||||| |||||||||| ||||||||| |||    
T  55049399 tggagaaaacttatgtacaattccttaggtgcttttcgtatagttcttaactaaattcactatgatttcctcaaacccataattttttcaaagtttgtta 55049498  T
Q  153 tat 155  Q
    |||    
T  55049499 tat 55049501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 1298912 - 1298964
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  |||||||||||||||||||||||||    
T  1298912 ggagaaaacttaggtacaattccttaggtgctttttgtatggttcttaactaa 1298964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 28809846 - 28809982
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa------ccatgatttcctcaaatccataattttctcaaagtttatta 152  Q
    |||||||||||||||| |||  ||||  ||||||| |||| ||| ||||||||      ||||||||| ||||||||||||||||||||||| ||| |||    
T  28809846 ggagaaaacttaggtacaatttcttaggtgcttttggtattgtttttaactaaatttcaccatgattttctcaaatccataattttctcaaaatttgtta 28809945  T
Q  153 tattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    |||        ||||||||| || |||||||||||||    
T  28809946 tatccaaaaaatatgtatttctagttaagaaccatac 28809982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 189
Target Start/End: Complemental strand, 24294607 - 24294503
Alignment:
Q  90 tttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattatattnnnnnnntatgtatttttaattaagaac 184  Q
    |||| |||||||||||||||||     |||| |||||||||||| | ||||||||||||||||| ||||||        ||||||||||||||||||||     
T  24294607 ttttcgtatggttcttaactaaattcaccataatttcctcaaattcgtaattttctcaaagtttgttatatcaaaaaaatatgtatttttaattaagaat 24294508  T
Q  185 catac 189  Q
    |||||    
T  24294507 catac 24294503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 55107521 - 55107576
Alignment:
Q  56 tatggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    ||||||||||||||||||| ||| |||||| |||||||  ||||||||||||||||    
T  55107521 tatggagaaaacttaggtacaattccttatgtgcttttcatatggttcttaactaa 55107576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 530841 - 530788
Alignment:
Q  58 tggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    ||||||||||||||||| ||| |||||  ||||||| |||||||||||||||||    
T  530841 tggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaa 530788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 151
Target Start/End: Original strand, 3422489 - 3422526
Alignment:
Q  114 atgatttcctcaaatccataattttctcaaagtttatt 151  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  3422489 atgattttctcaaatccataattttctcaaagtttatt 3422526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 27434610 - 27434662
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| |||  ||||| |||||||||||| ||||||||||||    
T  27434610 ggagaaaacttaggtacaatttcttatgtgctttttgtatagttcttaactaa 27434662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 155
Target Start/End: Original strand, 36030941 - 36031031
Alignment:
Q  61 agaaaacttaggtataatcccttatatgctttttgtatggttcttaactaaccatgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    |||||| ||||||| ||| |||||  ||||||| ||||| |||||||||||  ||  |  |||||||||||||||||||||||||||| ||||||    
T  36030941 agaaaagttaggtacaattccttacgtgcttttcgtatgtttcttaactaa--at--tcacctcaaatccataattttctcaaagtttgttatat 36031031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 52824239 - 52824291
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  ||||||| |||||||||||||||||    
T  52824239 ggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaa 52824291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 148
Target Start/End: Complemental strand, 2272514 - 2272443
Alignment:
Q  82 ttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagttt 148  Q
    |||| ||||||| |||||||||||| ||||     |||||||||||| |||||||||||||| |||||||||    
T  2272514 ttatgtgcttttcgtatggttcttagctaaattcaccatgatttccttaaatccataattttatcaaagttt 2272443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 111
Target Start/End: Original strand, 18417658 - 18417709
Alignment:
Q  60 gagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    ||||||||||||||| ||| |||||  ||||||| |||||||||||||||||    
T  18417658 gagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaa 18417709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 155
Target Start/End: Original strand, 52587382 - 52587416
Alignment:
Q  121 cctcaaatccataattttctcaaagtttattatat 155  Q
    |||||||||||||||||||||||||||| ||||||    
T  52587382 cctcaaatccataattttctcaaagtttgttatat 52587416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Complemental strand, 24969716 - 24969663
Alignment:
Q  58 tggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    ||||||||||||||||| ||| |||||  ||||||| |||| ||||||||||||    
T  24969716 tggagaaaacttaggtacaattccttaggtgcttttcgtatagttcttaactaa 24969663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 9355581 - 9355641
Alignment:
Q  87 tgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctca 142  Q
    |||||||  ||||||||||||||||     |||||||||||| ||||||||||||||||||    
T  9355581 tgcttttcatatggttcttaactaaattcaccatgatttccttaaatccataattttctca 9355641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 20435311 - 20435259
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| | |||  ||||||| |||||||||||||||||    
T  20435311 ggagaaaacttaggtacaattctttaggtgcttttcgtatggttcttaactaa 20435259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 58)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 36657433 - 36657568
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaac-----catgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| ||||| |||||||| |||||||||||||||||      |||||||||||||||||||||||||||||||||||| ||||    
T  36657433 ggagaaaacttaggtacaattccttagatgcttttcgtatggttcttaactaaaaatatcatgatttcctcaaatccataattttctcaaagtttgttat 36657532  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        |||||||||||| |||||||||||||    
T  36657533 atcaaaaaaatatgtatttttagttaagaaccatac 36657568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 22176285 - 22176186
Alignment:
Q  54 tatatggagaaaacttaggtataatcccttatatgctttttgtatggttcttaacta-----accatgatttcctcaaatccataattttctcaaagttt 148  Q
    |||| |||||||||||||||| ||| |||||| ||||||||||||||||||||||||     || |||||||||||||||||||||||||||||||||||    
T  22176285 tatacggagaaaacttaggtacaattccttatgtgctttttgtatggttcttaactaaattcactatgatttcctcaaatccataattttctcaaagttt 22176186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 21969157 - 21969292
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||  ||||||| |||||||||||||||||     |||||||||||| |||||||||||||||||||||||| ||||    
T  21969157 ggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaaattcaccatgatttccttaaatccataattttctcaaagtttgttat 21969256  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        |||||||||||| |||||||||||||    
T  21969257 atccaaaaaatatgtatttttagttaagaaccatac 21969292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 21991593 - 21991728
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||  ||||||| |||||||||||||||||     |||||||||||| |||||||||||||||||||||||| ||||    
T  21991593 ggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaaattcaccatgatttccttaaatccataattttctcaaagtttgttat 21991692  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        |||||||||||| |||||||||||||    
T  21991693 atccaaaaaatatgtatttttagttaagaaccatac 21991728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 54 - 155
Target Start/End: Complemental strand, 22101341 - 22101235
Alignment:
Q  54 tatatggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagttt 148  Q
    ||||||||||||||||||||| ||| ||||||  |||||| |||||||||||||||||     | |||||||||||||||||||||||||||||||||||    
T  22101341 tatatggagaaaacttaggtacaattccttatgagcttttcgtatggttcttaactaaattcactatgatttcctcaaatccataattttctcaaagttt 22101242  T
Q  149 attatat 155  Q
     ||||||    
T  22101241 gttatat 22101235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 36822760 - 36822895
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||  ||||||| |||||||||||||||||     |||||||||||||| |||||||||||||||||||||| ||||    
T  36822760 ggagaaaacttaggtacaattccttagctgcttttcgtatggttcttaactaaaaataccatgatttcctcagatccataattttctcaaagtttgttat 36822859  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        |||||||||||| |||||||||||||    
T  36822860 atccaaaaaatatgtatttttagttaagaaccatac 36822895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 3970491 - 3970626
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||  ||| |||||  ||||||| |||||||||||||||||     |||||||||||| |||||||||||||||||||||||| ||||    
T  3970491 ggagaaaacttaggtgcaattccttaggtgcttttcgtatggttcttaactaaattcaccatgatttccttaaatccataattttctcaaagtttgttat 3970590  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        |||||||||||| |||||||||||||    
T  3970591 atccaaaaaatatgtatttttagttaagaaccatac 3970626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 45487970 - 45487835
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||  ||||||| |||||||||||||||||     ||||||||||||||||| |||||||||||||| |||| ||||    
T  45487970 ggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaaattcaccatgatttcctcaaattcataattttctcaatgtttgttat 45487871  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        |||||||||||| |||||||||||||    
T  45487870 atccaaaaaatatgtatttttagttaagaaccatac 45487835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 189
Target Start/End: Original strand, 13078161 - 13078298
Alignment:
Q  57 atggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttatt 151  Q
    |||||||||||||||||  ||| |||||  ||||||| |||||||||||||||||     |||||||||||| |||||||||||||||||||||||| ||    
T  13078161 atggagaaaacttaggtgcaattccttaggtgcttttcgtatggttcttaactaaattcaccatgatttccttaaatccataattttctcaaagtttgtt 13078260  T
Q  152 atattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||||        |||||||||||| ||||||| |||||    
T  13078261 atatccaaaaaatatgtatttttagttaagaatcatac 13078298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 189
Target Start/End: Original strand, 32237396 - 32237529
Alignment:
Q  61 agaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    |||||||||||||| ||| |||||  || |||| |||||||||||||||||     ||||||||| |||| |||||||||||||||||||||| ||||||    
T  32237396 agaaaacttaggtacaattccttaggtgtttttcgtatggttcttaactaaatttaccatgattttctcagatccataattttctcaaagtttgttatat 32237495  T
Q  156 tnnnnnnntatgtatttttaattaagaaccatac 189  Q
            ||||||||||||||||||||||||||    
T  32237496 ccaaaaaatatgtatttttaattaagaaccatac 32237529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 60 - 188
Target Start/End: Complemental strand, 10017279 - 10017151
Alignment:
Q  60 gagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaaccatgatttcctcaaatccataattttctcaaagtttattatattnnn 159  Q
    ||||||| ||||||| ||| |||||  ||||||| ||||||||||||| | | |||||||| ||||||||||||||||| ||||||||| ||||||        
T  10017279 gagaaaatttaggtacaattccttaggtgcttttcgtatggttcttaattcatcatgattttctcaaatccataattttttcaaagtttgttatatccaa 10017180  T
Q  160 nnnntatgtatttttaattaagaaccata 188  Q
        |||||||||||| ||||||||||||    
T  10017179 aaaatatgtatttttagttaagaaccata 10017151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 12789777 - 12789642
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaacta-----accatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    ||||||||||| |||| ||| |||||  ||||||||||||||||||||| ||     |||||||||||||||||| ||||||||| ||||||||| ||||    
T  12789777 ggagaaaactttggtagaattccttaggtgctttttgtatggttcttaattaaattcaccatgatttcctcaaattcataattttttcaaagtttgttat 12789678  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        |||||||||||| |||||||||||||    
T  12789677 atccaaaaaatatgtatttttagttaagaaccatac 12789642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 26906625 - 26906490
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| ||||| || ||||| |||||||||||||||||     | ||||||||||||||| ||||||||||||||||||| ||||    
T  26906625 ggagaaaacttaggtacaattccttagatacttttcgtatggttcttaactaaattcactatgatttcctcaaattcataattttctcaaagtttgttat 26906526  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        ||| |||||||| |||||||||||||    
T  26906525 atccaaaaaatatatatttttagttaagaaccatac 26906490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 36278756 - 36278891
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| ||||| || ||||| |||||||||||||||||     | ||||||||||||||| ||||||||||||||||||| ||||    
T  36278756 ggagaaaacttaggtacaattccttagatacttttcgtatggttcttaactaaattcactatgatttcctcaaattcataattttctcaaagtttgttat 36278855  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        ||| |||||||| |||||||||||||    
T  36278856 atccaaaaaatatatatttttagttaagaaccatac 36278891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 4072273 - 4072374
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| |||  ||||  ||||||| |||||||||||||||||     ||||||||||||| ||||||||||||||||||||||| ||||    
T  4072273 ggagaaaacttaggtacaatttcttaggtgcttttcgtatggttcttaactaaattcaccatgatttcctcgaatccataattttctcaaagtttgttat 4072372  T
Q  154 at 155  Q
    ||    
T  4072373 at 4072374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 25446420 - 25446320
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    ||||||||||||| || ||| |||||  ||||||| |||||||||||||||||     ||||||||||||||||||||||||||||||||||||| ||||    
T  25446420 ggagaaaacttag-tacaattccttaggtgcttttcgtatggttcttaactaaattcaccatgatttcctcaaatccataattttctcaaagtttgttat 25446322  T
Q  154 at 155  Q
    ||    
T  25446321 at 25446320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 50099605 - 50099504
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||  ||||||| |||||||||||||||||     |||| |||||||||||| ||||||||||||||||||| ||||    
T  50099605 ggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaaattcaccataatttcctcaaattcataattttctcaaagtttgttat 50099506  T
Q  154 at 155  Q
    ||    
T  50099505 at 50099504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 185
Target Start/End: Original strand, 10441258 - 10441389
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaac-----catgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||| ||| ||| |||||  ||||||| ||||| |||||||||||      |||||||||||||||||||||||||||||||||||| ||||    
T  10441258 ggagaaaacttaagtacaattccttaggtgcttttggtatgattcttaactaaaaatatcatgatttcctcaaatccataattttctcaaagtttgttat 10441357  T
Q  154 attnnnnnnntatgtatttttaattaagaacc 185  Q
    ||        |||||||||||| |||||||||    
T  10441358 atccaaaaaatatgtatttttagttaagaacc 10441389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 54 - 155
Target Start/End: Original strand, 43639076 - 43639182
Alignment:
Q  54 tatatggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagttt 148  Q
    |||| ||||||||||||| |||||| |||||  ||||||| ||||| |||||||| ||     |||||||||| ||||||||||||||||||||||||||    
T  43639076 tataaggagaaaacttagttataattccttaggtgcttttcgtatgattcttaaccaaattcaccatgatttcttcaaatccataattttctcaaagttt 43639175  T
Q  149 attatat 155  Q
     ||||||    
T  43639176 gttatat 43639182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 12838191 - 12838113
Alignment:
Q  111 accatgatttcctcaaatccataattttctcaaagtttattatattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    |||||||||||||||||||||||||||||||||||||| ||||||        |||||||||||| |||||||||||||    
T  12838191 accatgatttcctcaaatccataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaagaaccatac 12838113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 35368904 - 35368803
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| |||  ||||| || |||| |||||||| ||||||||     ||||||||| ||||||||||||||||||||||||||| ||||    
T  35368904 ggagaaaacttaggtacaatttcttatgtgtttttcgtatggtttttaactaaattcaccatgattttctcaaatccataattttctcaaagtttgttat 35368805  T
Q  154 at 155  Q
    ||    
T  35368804 at 35368803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 155
Target Start/End: Complemental strand, 8831911 - 8831811
Alignment:
Q  60 gagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattata 154  Q
    ||||||||||||||| |||   |||  ||||||| |||||||||||||||||     |||||||||| |||||||||||||||||||||||||| |||||    
T  8831911 gagaaaacttaggtacaattttttaggtgcttttcgtatggttcttaactaaattcaccatgatttcttcaaatccataattttctcaaagtttgttata 8831812  T
Q  155 t 155  Q
    |    
T  8831811 t 8831811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 10117682 - 10117586
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaaccatgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    |||||||| ||||||| ||| |||||  ||||||| |||||||||||||||||     |||| ||||||||||||||||||||||||||| ||||||    
T  10117682 ggagaaaatttaggtacaattccttaggtgcttttcgtatggttcttaactaaattcaattttctcaaatccataattttctcaaagtttgttatat 10117586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 189
Target Start/End: Original strand, 25488339 - 25488476
Alignment:
Q  57 atggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttatt 151  Q
    ||||||||| |||| ||| ||| |||||  ||||||| |||| ||||||||||||     |||||||||| ||| |||||||||||||||||||||| ||    
T  25488339 atggagaaatcttaagtacaattccttaggtgcttttcgtatagttcttaactaaattcaccatgatttcttcatatccataattttctcaaagtttgtt 25488438  T
Q  152 atattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||||        |||||||||||| |||||||||||||    
T  25488439 atatccaaaaaatatgtatttttagttaagaaccatac 25488476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 155
Target Start/End: Original strand, 13723989 - 13724088
Alignment:
Q  60 gagaaaacttaggtataatcccttatatgctttttgtatggttctta----actaaccatgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    ||||||||||||||| |||  ||||  ||||||||||||||||||||    | | ||||||||||| |||||| ||||||||||||||||||| ||||||    
T  13723989 gagaaaacttaggtacaatttcttaggtgctttttgtatggttcttactaaattcaccatgatttcttcaaattcataattttctcaaagtttgttatat 13724088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 25561182 - 25561047
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    ||||||| |||| ||| ||| |||||  ||||||| |||| ||||||||||||     |||||||||| ||| |||||||||||||||||||||| ||||    
T  25561182 ggagaaatcttaagtacaattccttaggtgcttttcgtatagttcttaactaaattcaccatgatttcttcatatccataattttctcaaagtttgttat 25561083  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        |||||||||||| |||||||||||||    
T  25561082 atccaaaaaatatgtatttttagttaagaaccatac 25561047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 36329188 - 36329315
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaaccatgatttcctcaaatccataattttctcaaagtttattatattnn 158  Q
    |||||||||||||||| |||  |||| || |||||||||| |||||||| |||  ||  || |||||||||||||||||||||||||||| ||||||       
T  36329188 ggagaaaacttaggtacaatttcttagatactttttgtattgttcttaaataa--attctt-cctcaaatccataattttctcaaagtttgttatatcca 36329284  T
Q  159 nnnnntatgtatttttaattaagaaccatac 189  Q
         |||||||||||| |||||||||||||    
T  36329285 aaaaatatgtatttttagttaagaaccatac 36329315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 39850344 - 39850446
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctca-aagtttatta 152  Q
    ||||||||||||||||  || |||||  || |||| |||||||||||||||||     ||||||||||||||||||||||||||||||| |||||| |||    
T  39850344 ggagaaaacttaggtactattccttaggtgtttttcgtatggttcttaactaaaaataccatgatttcctcaaatccataattttctcacaagtttgtta 39850443  T
Q  153 tat 155  Q
    |||    
T  39850444 tat 39850446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 148
Target Start/End: Complemental strand, 46679432 - 46679338
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagttt 148  Q
    |||||||||||| ||| ||| ||||  ||||||||| || |||||||||||||     |||| ||||||||||||||||||||||||||||||||    
T  46679432 ggagaaaacttaagtacaattccttggatgctttttatacggttcttaactaaattcaccataatttcctcaaatccataattttctcaaagttt 46679338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 59 - 151
Target Start/End: Complemental strand, 26977861 - 26977764
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaacc-----atgatttcctcaaatccataattttctcaaagtttatt 151  Q
    |||||||||||||||| |||  |||| || |||||  ||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  26977861 ggagaaaacttaggtacaatttcttagatacttttcatatggttcttaactaaatttagtatgatttcctcaaatccataattttctcaaagtttatt 26977764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 55340293 - 55340394
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaacta-----accatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||| ||||||| |||  ||||| || |||| ||||| ||||||||||     |||||||||| ||||||||||||||||||||||||||| ||||    
T  55340293 ggagaaaatttaggtacaatttcttatgtgtttttcgtatgattcttaactatattcaccatgattttctcaaatccataattttctcaaagtttgttat 55340392  T
Q  154 at 155  Q
    ||    
T  55340393 at 55340394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 155
Target Start/End: Complemental strand, 10254739 - 10254639
Alignment:
Q  60 gagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaac-----catgatttcctcaaatccataattttctcaaagtttattata 154  Q
    ||||||| ||||||| ||| |||||  ||||||| |||||||||||||||||      |||||||| ||||||||||||||||| ||||||||| |||||    
T  10254739 gagaaaatttaggtacaattccttaggtgcttttcgtatggttcttaactaaattcatcatgattttctcaaatccataattttttcaaagtttgttata 10254640  T
Q  155 t 155  Q
    |    
T  10254639 t 10254639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 189
Target Start/End: Original strand, 45712901 - 45713038
Alignment:
Q  57 atggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttatt 151  Q
    |||||||||||||||||| ||| |||||  |||||||| | |  |||||||||||     |||||||||||||||| |||||||||| ||||||||| ||    
T  45712901 atggagaaaacttaggtacaattccttaggtgctttttttttttttcttaactaaattcaccatgatttcctcaaagccataattttatcaaagtttgtt 45713000  T
Q  152 atattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||||        |||||||||||| || ||||||||||    
T  45713001 atatccaaaaaatatgtatttttagtttagaaccatac 45713038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 44611382 - 44611482
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    ||||||||||||| || ||| |||||  | |||||||||| ||||||||||||     |||||||||| |||||| ||||||||||||||||||| ||||    
T  44611382 ggagaaaacttag-tacaattccttaggtactttttgtatagttcttaactaaattcaccatgatttcttcaaattcataattttctcaaagtttgttat 44611480  T
Q  154 at 155  Q
    ||    
T  44611481 at 44611482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 25488512 - 25488460
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  |||||||||||||||||||||||||    
T  25488512 ggagaaaacttaggtacaattccttaggtgctttttgtatggttcttaactaa 25488460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 25561011 - 25561063
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  |||||||||||||||||||||||||    
T  25561011 ggagaaaacttaggtacaattccttaggtgctttttgtatggttcttaactaa 25561063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 35368549 - 35368601
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||| ||||||| |||||||||||||||||    
T  35368549 ggagaaaacttaggtacaattccttatgtgcttttcgtatggttcttaactaa 35368601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 36657604 - 36657552
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| ||||| |||||||| |||||||||||||||||    
T  36657604 ggagaaaacttaggtacaattccttagatgcttttcgtatggttcttaactaa 36657552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 155
Target Start/End: Complemental strand, 404213 - 404115
Alignment:
Q  61 agaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    ||||||||||| || ||| | ||| |||||||  |||||||||||||||||     ||||||||||||||| || |||||||||||||||||| ||||||    
T  404213 agaaaacttag-tacaattctttagatgctttccgtatggttcttaactaaattcaccatgatttcctcaagtctataattttctcaaagtttgttatat 404115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 153
Target Start/End: Original strand, 1476555 - 1476650
Alignment:
Q  63 aaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||| ||| |||||  ||||||| |||||||||| | ||||     |||||||||||| |||||||||||| ||||||||||| ||||    
T  1476555 aaaacttaggtacaattccttaggtgcttttggtatggttctaacctaaattcaccatgatttccttaaatccataattctctcaaagtttgttat 1476650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 46664284 - 46664212
Alignment:
Q  117 atttcctcaaatccataattttctcaaagtttattatattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    |||||||||||| ||||||||||||||||||| |||||||       |||||||||||| |||||||| ||||    
T  46664284 atttcctcaaattcataattttctcaaagtttgttatattaaaaaaatatgtatttttagttaagaactatac 46664212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 155
Target Start/End: Original strand, 157031 - 157069
Alignment:
Q  117 atttcctcaaatccataattttctcaaagtttattatat 155  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  157031 atttcctcaaatccataattttctcaaagtttgttatat 157069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 189
Target Start/End: Complemental strand, 43150591 - 43150516
Alignment:
Q  114 atgatttcctcaaatccataattttctcaaagtttattatattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||||||||||||||| ||||||||||||||||||| ||||||        |||||||||||| |||| ||||||||    
T  43150591 atgatttcctcaaattcataattttctcaaagtttgttatatccaaaaaatatgtatttttagttaaaaaccatac 43150516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 151
Target Start/End: Original strand, 26976902 - 26976939
Alignment:
Q  114 atgatttcctcaaatccataattttctcaaagtttatt 151  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  26976902 atgattttctcaaatccataattttctcaaagtttatt 26976939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 21969328 - 21969276
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  ||||||| |||||||||||||||||    
T  21969328 ggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaa 21969276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 21991764 - 21991712
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  ||||||| |||||||||||||||||    
T  21991764 ggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaa 21991712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 45487799 - 45487851
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  ||||||| |||||||||||||||||    
T  45487799 ggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaa 45487851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 154
Target Start/End: Complemental strand, 37537020 - 37536941
Alignment:
Q  80 ccttatatgctttttgtatggttcttaactaacc-----atgatttcctcaaatccataattttctcaaagtttattata 154  Q
    ||||| || |||||||||||||||||||||||       || |||||||| ||||||||||||||||||||||| |||||    
T  37537020 ccttaaatactttttgtatggttcttaactaaattatttataatttcctctaatccataattttctcaaagtttgttata 37536941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 111
Target Start/End: Original strand, 12838079 - 12838129
Alignment:
Q  61 agaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||| ||| ||| |||||  |||||||||||||||||||||||||    
T  12838079 agaaaacttatgtacaattccttaggtgctttttgtatggttcttaactaa 12838129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 44920706 - 44920747
Alignment:
Q  114 atgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    ||||||| |||||||  |||||||||||||||||||||||||    
T  44920706 atgattttctcaaatttataattttctcaaagtttattatat 44920747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 4072445 - 4072393
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  || |||| |||||||||||||||||    
T  4072445 ggagaaaacttaggtacaattccttaggtgtttttcgtatggttcttaactaa 4072393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 10441429 - 10441377
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  ||||||| ||| |||||||||||||    
T  10441429 ggagaaaacttaggtacaattccttaggtgcttttggtacggttcttaactaa 10441377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 12789606 - 12789658
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  || |||| |||||||||||||||||    
T  12789606 ggagaaaacttaggtacaattccttaggtgtttttcgtatggttcttaactaa 12789658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 26906454 - 26906506
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  | ||||| |||||||||||||||||    
T  26906454 ggagaaaacttaggtacaattccttaggtccttttcgtatggttcttaactaa 26906506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 32237565 - 32237517
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaa 107  Q
    |||||||||||||||| ||| |||||  ||||||| |||||||||||||    
T  32237565 ggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaa 32237517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 36278927 - 36278875
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  | ||||| |||||||||||||||||    
T  36278927 ggagaaaacttaggtacaattccttaggtccttttcgtatggttcttaactaa 36278875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 39850516 - 39850464
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  ||||||| ||||| |||||||||||    
T  39850516 ggagaaaacttaggtacaattccttaggtgcttttcgtatgattcttaactaa 39850464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 49984045 - 49984001
Alignment:
Q  111 accatgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    |||||||||| || |||||||||||||| ||||| ||||||||||    
T  49984045 accatgattttcttaaatccataattttttcaaaatttattatat 49984001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 24101832 - 24101967
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||  ||||||| |||||||||||||||||     ||||||||||||||||||||||||||||||||||||| ||||    
T  24101832 ggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaaatataccatgatttcctcaaatccataattttctcaaagtttgttat 24101931  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        |||||||||||| |||||||||||||    
T  24101932 atccaaaaaatatgtatttttagttaagaaccatac 24101967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 57 - 189
Target Start/End: Complemental strand, 45408798 - 45408661
Alignment:
Q  57 atggagaaaacttaggtataatcccttatatgctttttgtatggttcttaacta-----accatgatttcctcaaatccataattttctcaaagtttatt 151  Q
    |||||||||||||||||| ||| |||||  ||||||| ||||||||||||| ||     |||||||||||||||||||||||||||||||||||||| ||    
T  45408798 atggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaattaaatttaccatgatttcctcaaatccataattttctcaaagtttgtt 45408699  T
Q  152 atattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||||        |||||||||||| |||||||||||||    
T  45408698 atatccaaaaaatatgtatttttagttaagaaccatac 45408661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 34490627 - 34490492
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||  ||||||| |||||||||||||||||     |||||||||||||| |||||||||||||||||||||| ||||    
T  34490627 ggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaaaaataccatgatttcctcagatccataattttctcaaagtttgttat 34490528  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        |||||||||||| |||||||||||||    
T  34490527 atccaaaaaatatgtatttttagttaagaaccatac 34490492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 22269893 - 22269792
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaac-----catgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||| ||| ||| ||||| |||||||| |||||||||||||||||      |||||||||||||||||||||||||||||||||||| ||||    
T  22269893 ggagaaaacttacgtacaattccttagatgcttttcgtatggttcttaactaaaaaaaacatgatttcctcaaatccataattttctcaaagtttgttat 22269794  T
Q  154 at 155  Q
    ||    
T  22269793 at 22269792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 43476117 - 43476016
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||| ||||||||||| |||||  || |||| |||||||||||||||||     ||||||||||||||||| ||||||||||||||||||||||||    
T  43476117 ggagaaaatttaggtataattccttaggtgtttttcgtatggttcttaactaaattcaccatgatttcctcaaattcataattttctcaaagtttattat 43476018  T
Q  154 at 155  Q
    ||    
T  43476017 at 43476016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 58 - 189
Target Start/End: Original strand, 12850541 - 12850677
Alignment:
Q  58 tggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttatta 152  Q
    |||| |||| ||||||| ||| |||||  | |||||||||||||| ||||||||     ||||||||||||||||||||||||||||||||||||| |||    
T  12850541 tggataaaatttaggtacaattccttaggtactttttgtatggtttttaactaaatttaccatgatttcctcaaatccataattttctcaaagtttgtta 12850640  T
Q  153 tattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    |||        |||||||||||| |||||||||||||    
T  12850641 tatccaaaaaatatgtatttttagttaagaaccatac 12850677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 9933570 - 9933704
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| | |||  |||||||  ||||||||||||||||     ||||||||| ||||||||||||||||||||||||||||||||    
T  9933570 ggagaaaacttaggtacaattcattag-tgcttttcctatggttcttaactaaattcaccatgattttctcaaatccataattttctcaaagtttattat 9933668  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        |||||||||||| |||||||||||||    
T  9933669 atctaaaaaatatgtatttttagttaagaaccatac 9933704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 1923980 - 1924081
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| |||  ||||  ||||||| |||||||||||||||||     ||||||||||||| ||||||||||||||||||||||| ||||    
T  1923980 ggagaaaacttaggtacaatttcttaggtgcttttcgtatggttcttaactaaattcaccatgatttcctcgaatccataattttctcaaagtttgttat 1924079  T
Q  154 at 155  Q
    ||    
T  1924080 at 1924081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 7737236 - 7737135
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||  ||||||| ||||| |||||||||||     |||||||||||||||| |||||||||||||||||||| ||||    
T  7737236 ggagaaaacttaggtacaattccttaggtgcttttcgtatgattcttaactaaatttaccatgatttcctcaaagccataattttctcaaagtttgttat 7737137  T
Q  154 at 155  Q
    ||    
T  7737136 at 7737135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 42713777 - 42713878
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||| |||| |||||| |||||  || |||| |||||||||||||||||     ||||||||| ||||||||||||||||||||||||||||||||    
T  42713777 ggagaaaatttagatataattccttaggtgtttttcgtatggttcttaactaaattcaccatgattttctcaaatccataattttctcaaagtttattat 42713876  T
Q  154 at 155  Q
    ||    
T  42713877 at 42713878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 2818838 - 2818743
Alignment:
Q  58 tggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagttt 148  Q
    ||||||||||||||||| ||| | |||  || |||| |||||||||||||||||     |||||||||||||||||||||||||||||||||||||    
T  2818838 tggagaaaacttaggtacaattctttaggtgtttttcgtatggttcttaactaaattcaccatgatttcctcaaatccataattttctcaaagttt 2818743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 6605905 - 6605805
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttctta----actaaccatgatttcctcaaatccataattttctcaaagtttattata 154  Q
    |||||||||||||||| ||| | |||  ||||||||||||||||||||    | | |||||||||||||||||| ||||||||||||||||||| |||||    
T  6605905 ggagaaaacttaggtacaattctttaggtgctttttgtatggttcttactaaatttaccatgatttcctcaaatgcataattttctcaaagtttgttata 6605806  T
Q  155 t 155  Q
    |    
T  6605805 t 6605805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 3117047 - 3116912
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaacc-----atgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| || ||  ||||||| |||||||||||||||||       ||||||| ||||||||||||||||||||||||||| ||||    
T  3117047 ggagaaaacttaggtacaattccatagctgcttttcgtatggttcttaactaaattcattatgattttctcaaatccataattttctcaaagtttgttat 3116948  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        |||||||||||| |||||||||||||    
T  3116947 atccaaaaaatatgtatttttagttaagaaccatac 3116912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 29229361 - 29229499
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgcttttt--gtatggttcttaacta-----accatgatttcctcaaatccataattttctc-aaagtttat 150  Q
    |||||||||||||||| |||  ||||| ||||||||  ||||| ||||||||||     | ||||||||||||||||||||||||||||| |||||||||    
T  29229361 ggagaaaacttaggtacaattacttatgtgcttttttcgtatgattcttaactatattcatcatgatttcctcaaatccataattttctcaaaagtttat 29229460  T
Q  151 tatattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    |||||        |||||||||||| |||||||||||||    
T  29229461 tatatccaaaaaatatgtatttttagttaagaaccatac 29229499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 189
Target Start/End: Original strand, 29342661 - 29342799
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgcttttt--gtatggttcttaacta-----accatgatttcctcaaatccataattttctc-aaagtttat 150  Q
    |||||||||||||||| |||  ||||| ||||||||  ||||| ||||||||||     | ||||||||||||||||||||||||||||| |||||||||    
T  29342661 ggagaaaacttaggtacaattacttatgtgcttttttcgtatgattcttaactatattcatcatgatttcctcaaatccataattttctcaaaagtttat 29342760  T
Q  151 tatattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    |||||        |||||||||||| |||||||||||||    
T  29342761 tatatccaaaaaatatgtatttttagttaagaaccatac 29342799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 27920743 - 27920642
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| |||   |||  ||||||| |||||||||||||||||     ||||||||||||||||||||||||||| ||||||||| ||||    
T  27920743 ggagaaaacttaggtacaattttttagctgcttttcgtatggttcttaactaaattcaccatgatttcctcaaatccataattttttcaaagtttgttat 27920644  T
Q  154 at 155  Q
    ||    
T  27920643 at 27920642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 189
Target Start/End: Complemental strand, 16705909 - 16705769
Alignment:
Q  54 tatatggagaaaacttaggtataatcccttatatgctttttgtatggttcttaacta-----accatgatttcctcaaatccataattttctcaaagttt 148  Q
    ||||||||||||| ||||||| ||| |||||  ||||||| |||||||| |||||||     || ||||||| |||||| |||||||||| |||||||||    
T  16705909 tatatggagaaaatttaggtacaattccttaggtgcttttcgtatggtttttaactaaattcactatgattttctcaaagccataattttatcaaagttt 16705810  T
Q  149 attatattnnnnnnntatgtatttttaattaagaaccatac 189  Q
     ||||||        |||||||||||| |||||||||||||    
T  16705809 gttatatccaaaaaatatgtatttttagttaagaaccatac 16705769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 111 - 155
Target Start/End: Complemental strand, 23835991 - 23835947
Alignment:
Q  111 accatgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  23835991 accatgatttcctcaaatccataattttctcaaagtttgttatat 23835947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 189
Target Start/End: Original strand, 9281346 - 9281482
Alignment:
Q  58 tggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttatta 152  Q
    |||||||||||| |||| ||| |||||  | |||||  ||||||||||||||||     | ||||||||||||||| ||||||||||||||||||| |||    
T  9281346 tggagaaaactttggtacaattccttaggtacttttcatatggttcttaactaaattcactatgatttcctcaaattcataattttctcaaagtttgtta 9281445  T
Q  153 tattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    |||        ||| |||||||| |||||||||||||    
T  9281446 tatccaaaaaatatatatttttagttaagaaccatac 9281482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 34455993 - 34455921
Alignment:
Q  117 atttcctcaaatccataattttctcaaagtttattatattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||||||||||||| |||||||||||||||||| ||||||        ||||||||||||||||||||||||||    
T  34455993 atttcctcaaatctataattttctcaaagtttgttatatccaaaaaatatgtatttttaattaagaaccatac 34455921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 155
Target Start/End: Complemental strand, 20893060 - 20892955
Alignment:
Q  54 tatatggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagttt 148  Q
    |||| ||||||||||||| |||||| |||||  ||||||| ||||| |||||||||||     | || ||||| ||||||||||||||||||||||||||    
T  20893060 tataaggagaaaacttag-tataattccttaggtgcttttcgtatgattcttaactaaaaatacaataatttcatcaaatccataattttctcaaagttt 20892962  T
Q  149 attatat 155  Q
     ||||||    
T  20892961 gttatat 20892955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 189
Target Start/End: Original strand, 9850786 - 9850892
Alignment:
Q  87 tgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattatattnnnnnnntatgtatttttaattaag 181  Q
    ||||||| |||||||||||||||||     ||||||||| || |||||||||||||||||||| ||| ||||| |       |||||||||||| |||||    
T  9850786 tgcttttcgtatggttcttaactaaatttaccatgattttcttaaatccataattttctcaaaatttgttata-tcaaaaaatatgtatttttagttaag 9850884  T
Q  182 aaccatac 189  Q
    ||||||||    
T  9850885 aaccatac 9850892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 16705733 - 16705785
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  ||||||| |||||||||||||||||    
T  16705733 ggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaa 16705785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 45408625 - 45408677
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  || ||||||||||||||||||||||    
T  45408625 ggagaaaacttaggtacaattccttaggtgttttttgtatggttcttaactaa 45408677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 24102006 - 24101951
Alignment:
Q  56 tatggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    ||||||||||||||| ||| ||| |||||  ||||||| |||||||||||||||||    
T  24102006 tatggagaaaacttaagtacaattccttaggtgcttttcgtatggttcttaactaa 24101951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 12850715 - 12850661
Alignment:
Q  57 atggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||||  ||| ||| | |||||||| |||||||||||||||||    
T  12850715 atggagaaaacttaggtccaattcctcagatgcttttcgtatggttcttaactaa 12850661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 34455883 - 34455933
Alignment:
Q  57 atggagaaaacttaggtataatcccttatatgctttttgtatggttcttaa 107  Q
    |||||||||||||||||| ||| |||||  ||||||| |||||||||||||    
T  34455883 atggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaa 34455933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 1924152 - 1924100
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  || |||| |||||||||||||||||    
T  1924152 ggagaaaacttaggtacaattccttaggtgtttttcgtatggttcttaactaa 1924100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 145
Target Start/End: Complemental strand, 7116534 - 7116450
Alignment:
Q  66 acttaggtataatcccttatatgctttttgtatggttcttaacta-----accatgatttcctcaaatccataattttctcaaag 145  Q
    ||||||||| |||  |||| ||| |||| ||||||||||||| ||     ||||| ||||| |||||||||||||||||||||||    
T  7116534 acttaggtacaatttcttagatgtttttcgtatggttcttaaataaatttaccataatttcatcaaatccataattttctcaaag 7116450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 9281518 - 9281466
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  | ||||| |||||||||||||||||    
T  9281518 ggagaaaacttaggtacaattccttaggtccttttcgtatggttcttaactaa 9281466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 20892884 - 20892936
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| |||  ||||  ||||||| |||||||||||||||||    
T  20892884 ggagaaaacttaggtacaatttcttaggtgcttttcgtatggttcttaactaa 20892936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 23835876 - 23835928
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||| ||| ||| |||||  ||||||| |||||||||||||||||    
T  23835876 ggagaaaacttatgtacaattccttaggtgcttttcgtatggttcttaactaa 23835928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 156
Target Start/End: Complemental strand, 40362627 - 40362552
Alignment:
Q  85 tatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattatatt 156  Q
    |||| |||| |||||||||||||||||     ||||||||| |||||||| |||||||||||| ||||| |||||||    
T  40362627 tatgtttttcgtatggttcttaactaaattcaccatgattttctcaaatc-ataattttctcatagtttgttatatt 40362552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 185
Target Start/End: Complemental strand, 40891189 - 40891053
Alignment:
Q  54 tatatggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagttt 148  Q
    |||||| |||||||||||||| ||| |||||  ||||||| |||||||||||||||||     |||||||||||||||||||||||||||||||||||||    
T  40891189 tatatgaagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaaattcaccatgatttcctcaaatccataattttctcaaagttt 40891090  T
Q  149 attatattnnnnnnntatgtatttttaattaagaacc 185  Q
     ||||||        |||||||||||| |||||||||    
T  40891089 gttatatccaaaaaatatgtatttttagttaagaacc 40891053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 38629645 - 38629510
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||  || |||| |||||||||||||||||     ||||||||||||||||| ||||||||||||||||||||||||    
T  38629645 ggagaaaacttaggtacaattccttaggtgtttttcgtatggttcttaactaaattcaccatgatttcctcaaattcataattttctcaaagtttattat 38629546  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        |||||||||||| |||||||||||||    
T  38629545 atccaaaaaatatgtatttttagttaagaaccatac 38629510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 61 - 189
Target Start/End: Complemental strand, 37114407 - 37114274
Alignment:
Q  61 agaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    |||||| ||||||| ||| | ||| ||| ||||||||||||||||||||||     ||||||||| || |||||||||||||||||||||||||||||||    
T  37114407 agaaaatttaggtacaattctttagatgttttttgtatggttcttaactaaattcaccatgattttcttaaatccataattttctcaaagtttattatat 37114308  T
Q  156 tnnnnnnntatgtatttttaattaagaaccatac 189  Q
            ||||||||||||||||||||||||||    
T  37114307 ccaaaaaatatgtatttttaattaagaaccatac 37114274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 188
Target Start/End: Original strand, 4262004 - 4262110
Alignment:
Q  87 tgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattatattnnnnnnntatgtatttttaattaag 181  Q
    ||||||| |||||||||||||||||     | ||||||||||||| ||||||||||||||||||||| |||||||       ||||||||||||||||||    
T  4262004 tgcttttcgtatggttcttaactaaattcactatgatttcctcaagtccataattttctcaaagtttgttatattcaaaaaatatgtatttttaattaag 4262103  T
Q  182 aaccata 188  Q
    |||||||    
T  4262104 aaccata 4262110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 17426628 - 17426729
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| | |||  ||||||| |||||||||||||||||     |||||||||||||||||| |||||||||||||||||| ||||    
T  17426628 ggagaaaacttaggtacaattcattaggtgcttttcgtatggttcttaactaaattcaccatgatttcctcaaatctataattttctcaaagtttgttat 17426727  T
Q  154 at 155  Q
    ||    
T  17426728 at 17426729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 155
Target Start/End: Original strand, 24741827 - 24741924
Alignment:
Q  63 aaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    |||||||||||| ||| |||||  ||||||| |||||||||||||||||     ||||||||||||||||||||| ||||||||| ||||||||||||    
T  24741827 aaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaaattcaccatgatttcctcaaatccatgattttctcagagtttattatat 24741924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 189
Target Start/End: Original strand, 29780956 - 29781094
Alignment:
Q  56 tatggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttat 150  Q
    |||||| |||| ||||||| ||| |||||  ||||||| |||||||| ||||||||     |||| |||||||||||||||||||||||||||||||| |    
T  29780956 tatggataaaatttaggtacaattccttaggtgcttttcgtatggtttttaactaaatttaccataatttcctcaaatccataattttctcaaagtttgt 29781055  T
Q  151 tatattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    |||||        |||||||||||| |||||||||||||    
T  29781056 tatatccaaaaaatatgtatttttagttaagaaccatac 29781094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 155
Target Start/End: Original strand, 33100643 - 33100746
Alignment:
Q  57 atggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttatt 151  Q
    |||||||||||||||||| |||  ||||  ||||||| |||||||||||||||||     || | |||||||||||||||||||||||||||||||| ||    
T  33100643 atggagaaaacttaggtacaatttcttaggtgcttttcgtatggttcttaactaaaaataccgttatttcctcaaatccataattttctcaaagtttgtt 33100742  T
Q  152 atat 155  Q
    ||||    
T  33100743 atat 33100746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 38520189 - 38520054
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||  ||||||| ||||| || ||||||||     ||||||||||||||||| ||||||||||||||||||| ||||    
T  38520189 ggagaaaacttaggtacaattccttaagtgcttttcgtatgttttttaactaaattcaccatgatttcctcaaattcataattttctcaaagtttgttat 38520090  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        ||| |||||||| |||||||||||||    
T  38520089 atccaaaaaatatatatttttagttaagaaccatac 38520054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 8210494 - 8210393
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaac-----catgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||| ||| ||| ||||| ||| |||||||||| |||||||| ||      |||||||||||||||||||||||||||||||||||| ||||    
T  8210494 ggagaaaacttaagtacaattccttagatgttttttgtatgattcttaaccaaattcatcatgatttcctcaaatccataattttctcaaagtttgttat 8210395  T
Q  154 at 155  Q
    ||    
T  8210394 at 8210393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 147
Target Start/End: Complemental strand, 15882372 - 15882279
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaacta-----accatgatttcctcaaatccataattttctcaaagtt 147  Q
    |||||||||||||||| ||| |||||  ||||||| ||||||||||||||||     |||||||||| |||||||||||||| |||||||||||    
T  15882372 ggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaactaaattcaccatgattttctcaaatccataatattctcaaagtt 15882279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 12234638 - 12234502
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaag-tttatta 152  Q
    |||||||||||||||| |||  |||| |||||||| |||||||| ||||||||     | ||||||||||||||| |||||||||||||||| ||| |||    
T  12234638 ggagaaaacttaggtacaatttcttagatgcttttcgtatggttattaactaaattcacgatgatttcctcaaattcataattttctcaaagttttgtta 12234539  T
Q  153 tattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    |||        |||||||||||| |||||||||||||    
T  12234538 tatccaaaaaatatgtatttttagttaagaaccatac 12234502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 156
Target Start/End: Original strand, 23940804 - 23940906
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    ||||||||||| |||| |||  ||||  ||||||| ||||| |||||||||||     ||||||||||||||||||| ||||||||||||||||| ||||    
T  23940804 ggagaaaacttcggtacaatttcttaagtgcttttcgtatgattcttaactaaattcaccatgatttcctcaaatccgtaattttctcaaagtttgttat 23940903  T
Q  154 att 156  Q
    |||    
T  23940904 att 23940906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 38515678 - 38515585
Alignment:
Q  56 tatggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaa 144  Q
    ||||||||||||||||||| ||| ||||| |||| ||| || ||||| |||| |||     | |||||||||||||||||||||||||||||||    
T  38515678 tatggagaaaacttaggtacaattccttagatgcatttcgtgtggtttttaattaaaaatacaatgatttcctcaaatccataattttctcaaa 38515585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 15882200 - 15882252
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  |||||||||||||||||||||||||    
T  15882200 ggagaaaacttaggtacaattccttaggtgctttttgtatggttcttaactaa 15882252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 155
Target Start/End: Original strand, 11828627 - 11828697
Alignment:
Q  90 tttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    |||| |||||||||||||||||     |||| |||||||||||||||| ||||||||||||||| ||||||    
T  11828627 ttttcgtatggttcttaactaaattcaccataatttcctcaaatccattattttctcaaagtttgttatat 11828697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 35467337 - 35467247
Alignment:
Q  63 aaaacttaggtataatcccttatatgctttttgtatggttcttaacta-----accatgatttcctcaaatccataattttctcaaagttt 148  Q
    |||||||| ||| ||| |||||| ||||||| ||||||||||||||||     | ||||||||| | |||||||||||||||| |||||||    
T  35467337 aaaacttacgtacaattccttatgtgcttttcgtatggttcttaactaaattcatcatgatttctttaaatccataattttcttaaagttt 35467247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 29781130 - 29781078
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||  ||| ||||| |||||||| |||||||||||||||||    
T  29781130 ggagaaaacttaggtccaattccttagatgcttttcgtatggttcttaactaa 29781078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 38520018 - 38520070
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||| ||||||||||| |||||  ||||||| |||||||||||||||||    
T  38520018 ggagaaaatttaggtataattccttagttgcttttcgtatggttcttaactaa 38520070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 24211450 - 24211401
Alignment:
Q  58 tggagaaaacttaggtataatcccttatatgctttttgtatggttcttaa 107  Q
    ||||||||||||||||| ||| |||||  ||||||| |||||||||||||    
T  24211450 tggagaaaacttaggtacaattccttaggtgcttttcgtatggttcttaa 24211401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 25264287 - 25264328
Alignment:
Q  114 atgatttcctcaaatccataattttctcaaagtttattatat 155  Q
    ||||||||||||||| ||||||||||| ||||||| ||||||    
T  25264287 atgatttcctcaaattcataattttcttaaagtttgttatat 25264328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 8210323 - 8210375
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  ||||||| ||||| |||||||||||    
T  8210323 ggagaaaacttaggtacaattccttaggtgcttttcgtatgattcttaactaa 8210375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 12234466 - 12234518
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||||||| | ||   ||||||| |||||||||||||||||    
T  12234466 ggagaaaacttaggtataattctttgggtgcttttcgtatggttcttaactaa 12234518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 57 - 189
Target Start/End: Complemental strand, 46007 - 45870
Alignment:
Q  57 atggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttatt 151  Q
    |||||||||||||||||| ||| |||||  |||||||  ||||||||||||||||     ||||||||| ||||||||||||||||||||||||||| ||    
T  46007 atggagaaaacttaggtacaattccttaggtgcttttcttatggttcttaactaaattcaccatgattttctcaaatccataattttctcaaagtttgtt 45908  T
Q  152 atattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||||        |||||||||||| |||||||||||||    
T  45907 atatccaaaaaatatgtatttttagttaagaaccatac 45870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 45834 - 45886
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  |||||||||||||||||||||||||    
T  45834 ggagaaaacttaggtacaattccttaggtgctttttgtatggttcttaactaa 45886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 60 - 189
Target Start/End: Complemental strand, 48296 - 48162
Alignment:
Q  60 gagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattata 154  Q
    |||||||||||| || ||| ||||| |||||||| |||| ||||||||||||     ||||||||| ||||||||||||||||||||||||||| |||||    
T  48296 gagaaaacttagatacaattccttagatgcttttcgtatagttcttaactaaattcaccatgattttctcaaatccataattttctcaaagtttgttata 48197  T
Q  155 ttnnnnnnntatgtatttttaattaagaaccatac 189  Q
    |        ||||||||||||||||| ||||||||    
T  48196 tccaaaaaatatgtatttttaattaaaaaccatac 48162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 59 - 155
Target Start/End: Original strand, 1939 - 2040
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||| |||||||||||   |||  |||||||||||||||||||||||||     |||||||||||||||||||||||||||| |||||||| ||||    
T  1939 ggagaaaatttaggtataattgtttaggtgctttttgtatggttcttaactaaattcaccatgatttcctcaaatccataattttcacaaagtttgttat 2038  T
Q  154 at 155  Q
    ||    
T  2039 at 2040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 2111 - 2059
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  |||||||| ||||||||||||||||    
T  2111 ggagaaaacttaggtacaattccttaggtgctttttatatggttcttaactaa 2059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 7257 - 7156
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaac-----catgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||| |||||||  || |||||  ||||||| |||||||||||||||||      |||||||||||||||||||||||||||||||||||| ||||    
T  7257 ggagaaaatttaggtacgattccttaggtgcttttcgtatggttcttaactaaattcatcatgatttcctcaaatccataattttctcaaagtttgttat 7158  T
Q  154 at 155  Q
    ||    
T  7157 at 7156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0653 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0653
Description:

Target: scaffold0653; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 189
Target Start/End: Original strand, 3392 - 3528
Alignment:
Q  58 tggagaaaacttaggtataatcccttatatgctttttgtatggttcttaacta-----accatgatttcctcaaatccataattttctcaaagtttatta 152  Q
    ||||||||||||||||| ||| | ||   ||||||||||||||||||||| ||     ||||||||||||||||||  |||||||| ||||||||| |||    
T  3392 tggagaaaacttaggtacaattcatttggtgctttttgtatggttcttaattaaattcaccatgatttcctcaaatttataattttatcaaagtttgtta 3491  T
Q  153 tattnnnnnnntatgtatttttaattaagaaccatac 189  Q
    |||        |||||||||||| |||||||||||||    
T  3492 tatccaaaaaatatgtatttttatttaagaaccatac 3528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 189
Target Start/End: Complemental strand, 51234 - 51099
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||||||||||| ||| |||||  | |||||  ||||||||||||||||     | |||||||||| |||| ||||||||||||||||||| ||||    
T  51234 ggagaaaacttaggtacaattccttaggtacttttcatatggttcttaactaaattcactatgatttccttaaattcataattttctcaaagtttgttat 51135  T
Q  154 attnnnnnnntatgtatttttaattaagaaccatac 189  Q
    ||        ||| |||||||| |||||||||||||    
T  51134 atccaaaaaatatatatttttagttaagaaccatac 51099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 51063 - 51115
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  | ||||| |||||||||||||||||    
T  51063 ggagaaaacttaggtacaattccttaggtccttttcgtatggttcttaactaa 51115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 10286 - 10185
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattat 153  Q
    |||||||| ||||||| |||  ||||| ||||||| ||||  ||||||| |||     ||||||||| |||| |||||||||||||||||||||| ||||    
T  10286 ggagaaaatttaggtacaatttcttatgtgcttttcgtataattcttaagtaaattcaccatgattttctcacatccataattttctcaaagtttgttat 10187  T
Q  154 at 155  Q
    ||    
T  10186 at 10185  T

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Target: scaffold0595 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0595
Description:

Target: scaffold0595; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 5878 - 5797
Alignment:
Q  59 ggagaaaacttaggtataatc--ccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccata 133  Q
    |||||||||||||||| |||   |||||  ||||||| |||||||||||||||||     ||||||||||||||||||||||    
T  5878 ggagaaaacttaggtacaattttccttaggtgcttttcgtatggttcttaactaaattcaccatgatttcctcaaatccata 5797  T

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Target: scaffold0006 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 72287 - 72340
Alignment:
Q  58 tggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||| |||||||||| ||| ||||| |||||||||||||| |||||| ||||    
T  72287 tggagagaacttaggtacaattccttagatgctttttgtatgattcttagctaa 72340  T

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Target: scaffold0118 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 155
Target Start/End: Complemental strand, 14612 - 14512
Alignment:
Q  60 gagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa-----ccatgatttcctcaaatccataattttctcaaagtttattata 154  Q
    ||||||||||||||| ||| ||||   ||||||| |||| ||||||||||||     |||| | ||| ||| |||||||||||||||||||| | |||||    
T  14612 gagaaaacttaggtacaattccttgggtgcttttcgtatcgttcttaactaaattcaccattacttcgtcatatccataattttctcaaagtctgttata 14513  T
Q  155 t 155  Q
    |    
T  14512 t 14512  T

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Target: scaffold0069 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 111
Target Start/End: Original strand, 26405 - 26457
Alignment:
Q  59 ggagaaaacttaggtataatcccttatatgctttttgtatggttcttaactaa 111  Q
    |||||||||||||||| ||| |||||  ||||||| |||||||| ||||||||    
T  26405 ggagaaaacttaggtacaattccttaggtgcttttcgtatggttattaactaa 26457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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