View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4660_high_25 (Length: 254)
Name: NF4660_high_25
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 25 - 240
Target Start/End: Complemental strand, 45673068 - 45672856
Alignment:
| Q |
25 |
atgcggaagaacaagagaatgttctcctaggaatcatcaacaatgaacaacaaaatctccatgcaaactgggatcatcaatgggaatattcacactcttc |
124 |
Q |
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| T |
45673068 |
atgcggaagaacaagagaatgttctcctaggaatcatcaacaatgaacaacaaaatctccatgcaaactgggatcatcaatgggaatattcacactcttc |
45672969 |
T |
|
| Q |
125 |
ctctcctgaaatctgcaccgttgatcaaactatcacagcacctccttcttccaccgtggaagaagctacaacagtaacagcatcgtgtaggagaaagcgt |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||| |
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| T |
45672968 |
ctctcctgaaatctgcaccgttgatcaaactatcacagcacctccttcttccaccatggaggaagct---acagtaacagcatcgtgtaggagaaagcgt |
45672872 |
T |
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| Q |
225 |
cgtcgtatcaagagtg |
240 |
Q |
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|||||||||||||||| |
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| T |
45672871 |
cgtcgtatcaagagtg |
45672856 |
T |
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