View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4660_high_28 (Length: 251)
Name: NF4660_high_28
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 16908373 - 16908211
Alignment:
| Q |
1 |
tattgaggttggtggttcttcttatactaagttgaaagaactaattgaggagcttaagtcattcaaacttgaaa-gattaacaagaaattggtatcagta |
99 |
Q |
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| T |
16908373 |
tattgaggttggtggttcttcttatactaagttgaaagaactaattgaggagcttaagtcatttaaacttgaaaagattaacaagaaattggtatcagta |
16908274 |
T |
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| Q |
100 |
acttagtaagaatcattctacattggaactgtgttagacctcttattattataaaactatata |
162 |
Q |
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| T |
16908273 |
acttagtaagaatcattctacattggaactgtgttagacctcttattattataaaactatata |
16908211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 154 - 231
Target Start/End: Complemental strand, 16908029 - 16907952
Alignment:
| Q |
154 |
aactatataagaggggatagcaaagttagtgatgcaattatgtttttaatttatattataccagttaattatgtgtgt |
231 |
Q |
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| T |
16908029 |
aactatataagaggggatatcaaagttagtgatgcaattatgtttttaatttatattataccagttaattatgtgtgt |
16907952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 14870290 - 14870359
Alignment:
| Q |
5 |
gaggttggtggttcttcttatactaagttgaaagaactaattgaggagcttaagtcattcaaacttgaaa |
74 |
Q |
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| T |
14870290 |
gaggttggtggttcttcatacactaagttgaaacaactaattgaggagcttaagtcattcaaacttgaaa |
14870359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 14870397 - 14870440
Alignment:
| Q |
99 |
aacttagtaagaatcattctacattggaact--gtgttagacct |
140 |
Q |
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| T |
14870397 |
aacttagtaagcatcattctacattggaactaagtgttagacct |
14870440 |
T |
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