View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4660_high_39 (Length: 222)

Name: NF4660_high_39
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4660_high_39
NF4660_high_39
[»] chr1 (3 HSPs)
chr1 (1-222)||(34593919-34594140)
chr1 (1-68)||(34578129-34578196)
chr1 (173-222)||(34578391-34578440)
[»] chr6 (4 HSPs)
chr6 (171-222)||(32601041-32601092)
chr6 (1-74)||(32590369-32590442)
chr6 (171-222)||(32590570-32590621)
chr6 (1-69)||(32600817-32600885)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 34593919 - 34594140
Alignment:
Q  1 ccattccatcctacaggtccagcatacgatgcccatttattgtttgaatctgctatagaagtcatgctagggagaaagtaaaataattttgatcacaata 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34593919 ccattccatcctccaggtccagcatacgatgcccatttattgtttgaatctgctatagaagtcatgctagggagaaagtaaaataattttgatcacaata 34594018  T
Q  101 tggaaaatgaagcaaagtaattgaacaatacatatcaatatagtgagtttctgttttttccattgattccttacctattccaattatcttcaatatcacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34594019 tggaaaatgaagcaaagtaattgaacaatacatatcaatatagtgagtttctgttttttccattgattccttacctattccaattatcttcaatatcacc 34594118  T
Q  201 tgttgttctccaactatttccc 222  Q
    ||||||||||||||||||||||    
T  34594119 tgttgttctccaactatttccc 34594140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 34578129 - 34578196
Alignment:
Q  1 ccattccatcctacaggtccagcatacgatgcccatttattgtttgaatctgctatagaagtcatgct 68  Q
    |||||||||||| ||||||||||||| ||||||||||| | ||||| ||||   ||||||||||||||    
T  34578129 ccattccatcctccaggtccagcataagatgcccatttgtcgtttgcatctataatagaagtcatgct 34578196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 222
Target Start/End: Original strand, 34578391 - 34578440
Alignment:
Q  173 acctattccaattatcttcaatatcacctgttgttctccaactatttccc 222  Q
    |||| |||||||||||||| |||||||| || ||||||||||||||||||    
T  34578391 acctcttccaattatcttctatatcacccgtggttctccaactatttccc 34578440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 32601041 - 32601092
Alignment:
Q  171 ttacctattccaattatcttcaatatcacctgttgttctccaactatttccc 222  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  32601041 ttacctattccagttatcttcaatatctcctgttgttctccaactatttccc 32601092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 32590369 - 32590442
Alignment:
Q  1 ccattccatcctacaggtccagcatacgatgcccatttattgtttgaatctgctatagaagtcatgctagggag 74  Q
    |||||||||||| ||||||||||||| ||||||||||||| ||||  ||||  |||||||||||| ||||||||    
T  32590369 ccattccatcctccaggtccagcataagatgcccatttatcgtttacatctattatagaagtcatcctagggag 32590442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 32590570 - 32590621
Alignment:
Q  171 ttacctattccaattatcttcaatatcacctgttgttctccaactatttccc 222  Q
    |||||||| ||||||||||| |||||| ||||||||||||||||||||||||    
T  32590570 ttacctatgccaattatctttaatatctcctgttgttctccaactatttccc 32590621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 32600817 - 32600885
Alignment:
Q  1 ccattccatcctacaggtccagcatacgatgcccatttattgtttgaatctgctatagaagtcatgcta 69  Q
    |||||||||||| ||||||||||||| ||||||||||| |  |||  ||||  ||||||||||||||||    
T  32600817 ccattccatcctccaggtccagcataagatgcccatttgtcatttacatctattatagaagtcatgcta 32600885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University