View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4660_high_7 (Length: 436)
Name: NF4660_high_7
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Complemental strand, 39979595 - 39979172
Alignment:
| Q |
1 |
acataatgatcaagctagatgtaggttagttgaattgttgacaaaccttgccggaatttagtactcacgccagacaagacaacagaacaggaataaaatt |
100 |
Q |
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| T |
39979595 |
acataatgatcaagctagatgtaggttagttgaattgttgacaaaccttgccggaatttagtactcacgccagacaagacaacagaacaggaataaaatt |
39979496 |
T |
|
| Q |
101 |
ccatgagtggcataaatcgattggatagttagcgtcccagaaagcgaggagcagaacagaacattctagtaaattgtaatctctgccattaaaccaataa |
200 |
Q |
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| T |
39979495 |
ccatgagtggcataaatcgattggatagttaacgtcccagaaagcgaggagcagaacagaacattctagtaaattgtaatctctgccattaaaccaataa |
39979396 |
T |
|
| Q |
201 |
agttgtgaatttgccattttctaatgccattgtgatttgtgaagccatgctagtccatcatcgactaaattgtgaaaattctgatgagctagctacaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39979395 |
agttgtgaatttgccattttctaatgccattgtgatttgtgaagccatgctagtccatcatcgactaaattgtgaaaattctgatgagct--ctacaaaa |
39979298 |
T |
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| Q |
301 |
catagtagtgtatgattgcaacatgttcttcctgaagagaggataagaggagatagccacactttagacaaaatgattcctgcgaaacctatgctttctc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39979297 |
catagtagtgtatgattgcaacatgttcttcctgaagagaggataagaggagatagccacactttagacaaaatgattcctgcgaaacctatgctttctc |
39979198 |
T |
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| Q |
401 |
acagattgaacatacttgtacctatg |
426 |
Q |
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| T |
39979197 |
acagattgaacatacttgtacctatg |
39979172 |
T |
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