View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4660_low_1 (Length: 666)
Name: NF4660_low_1
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 19 - 521
Target Start/End: Complemental strand, 43083406 - 43082904
Alignment:
| Q |
19 |
attaacgtgactaatctctatnnnnnnnnccgttacacacaagatgagtttttccttctctgaattttctcaattcaaaagagcaagagatcgagctctt |
118 |
Q |
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| T |
43083406 |
attaacgtgactaatctctataaaaaaacctgttacacacaagatgagtttttccttctctgaattttctcaattcaaaagagcaagagattgagctctt |
43083307 |
T |
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| Q |
119 |
aaccatttcctgaagtgacaccttctctgaatacactatttttatacacatcacatccatattttattaatgaatatcctaaagatattattagcagttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43083306 |
aaccatttcctgaagtgacaccttctctgaatacactatttttatacacatcacatccatattttattaatgaatatcctaaagatattattagcagttt |
43083207 |
T |
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| Q |
219 |
cctttgtataaaacgttctgagtgtgtttggtgaagtagttttgattaaggcgcaagtggcttcttcgatagtcatagtacaaaatgttggtatgtttca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||| |
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| T |
43083206 |
cctttgtataaaacgttctgagtgtgtttggtgaagtagttttgattaaggcgcaagtggcttcttggatagtcatagtacgaactgttggtatgtttca |
43083107 |
T |
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| Q |
319 |
tggtttggtaagtctggaaaatgttgaaaaagtgttgcagagagtacgtagaaactcttttttgaatccgtacaaaatgaaaataggagaataatgaaat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43083106 |
tggtttggtaagtctggaaaatgttgaaaaagtgttgcagagagtacgtagaaactcttttttgaatccgtacaaaatgaaaataggagaataatgaaat |
43083007 |
T |
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| Q |
419 |
gtacttggttagaagtgcttatcgttgttgtgttggtgaaatgcaaaaattcctccnnnnnnnnnnnntctactttagcatgcatgttcgtagaaattgc |
518 |
Q |
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| T |
43083006 |
gtacttggttagaagtgcttatcgttgttgtgttggtgaaatgcaaaaattcctccaaaaataaaaaatctactttagcatgtatgttcgtagaaattgc |
43082907 |
T |
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| Q |
519 |
cta |
521 |
Q |
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||| |
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| T |
43082906 |
cta |
43082904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 547 - 643
Target Start/End: Complemental strand, 43082901 - 43082805
Alignment:
| Q |
547 |
gaggggtaaattgtccatataattgtgtgctatgtgattccgatattaaagataacatgcatatccttttggcaaatgattgaaattggaactatat |
643 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
43082901 |
gaggggtaaattgtccatataattgtgtgctatgtgattccgatattaaagataacatgcatatccttttggcaaatgattgaaaatggaactatat |
43082805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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