View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4660_low_10 (Length: 430)
Name: NF4660_low_10
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 165 - 416
Target Start/End: Complemental strand, 39863428 - 39863175
Alignment:
| Q |
165 |
tatattaagttgaatatgctcgagattgaatgggattgtaaaggttgaatccaacgcaatcacgcaagtgcaatcggcttctattttannnnnnnncatc |
264 |
Q |
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| T |
39863428 |
tatattaagttgaatatgctcgagattgaatgggattgtaaaggttgaatccaacgcaatcacgcaagtgcaatcggcttctattttattttttt-catc |
39863330 |
T |
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| Q |
265 |
ttatttctggtatac---gtctcgccgcatttgccatggaccccacggaaccttcccccactttacattgtggtgcccacatatacctcagcttccacta |
361 |
Q |
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| T |
39863329 |
ttatttctggtatgctgcgtctcgccgcatttgctatggaccccacggaaccttcccccactttacattgtggtgcccacatatacctcagcttccacta |
39863230 |
T |
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| Q |
362 |
attgttcaatcaatcagatactcctaacattgggttctatccactctctatgccc |
416 |
Q |
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| T |
39863229 |
attgttcaatcaatctgatactcctaacattgggttctatccactctctatgccc |
39863175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 32 - 119
Target Start/End: Complemental strand, 39863515 - 39863428
Alignment:
| Q |
32 |
tttatgttttaattcaaataagttgaaataaccaactctttcgttatacggtaattgttttgagtgttgacatcttttctttagcatt |
119 |
Q |
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| T |
39863515 |
tttatgttttaattcaaataagttgaaataaccaactctttcgttatacggtaattgttttgagtgttgacatgttttctttagcatt |
39863428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 5595190 - 5595226
Alignment:
| Q |
279 |
cgtctcgccgcatttgccatggaccccacggaacctt |
315 |
Q |
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| T |
5595190 |
cgtctcgccgcatttgccatggaccccacggaacctt |
5595226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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