View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4660_low_11 (Length: 421)
Name: NF4660_low_11
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 34 - 404
Target Start/End: Complemental strand, 6700320 - 6699950
Alignment:
| Q |
34 |
gggaaattaatcaataggattaaaattttgtgttaataaaaatagaattaaagtaaaggatcaatcaagttaattaatagctaatgttgtctacaatagt |
133 |
Q |
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| T |
6700320 |
gggaatttaatcaataggattaaaattttgtattaataaaaatagaattaaagtaaaggatcaattaagttaattaatagctaatgttgtctacaatagt |
6700221 |
T |
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| Q |
134 |
tgagtcaaataaaaaatagcacaccccgtaatagnnnnnnnnctttcaagcagaacatagtccacaatagttttgattgctcaagaaaactggaataaag |
233 |
Q |
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| T |
6700220 |
tgagtcaaataaaaaatagcacagcccgtaatagttttttttctttcaagtagaacatagtccacaatagttttgattgctcaagaaaacaggaataaag |
6700121 |
T |
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| Q |
234 |
atcctttccatttaagattaaaatgaattttagaggacaaaagctacaaattctagctctacaaacaaaatcaattttttaattctcctaagcttagctc |
333 |
Q |
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| T |
6700120 |
atcctctccatttaagattaaaatgaattttagaggataaaagctacaaattctagctctaaaaacaaaattaattttttagtccccataaacttagctc |
6700021 |
T |
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| Q |
334 |
acaatgcattaaaatcaattttttaacaaaacatgataaaatcaattctacattctt-aagaatcaattttg |
404 |
Q |
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| T |
6700020 |
a-gttgcattaaaatcaattttttaacaaaacgtgataaaatcaattctacactcttaaagaatcaattttg |
6699950 |
T |
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