View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4660_low_14 (Length: 387)
Name: NF4660_low_14
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 34970925 - 34970555
Alignment:
| Q |
1 |
accttttattctataaataaatacaacacatcatgattcaacttggccatatatagcaattgatgcggccaaaaaagccaattttatctttaggnnnnnn |
100 |
Q |
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| T |
34970925 |
acctcttattctataaataaatacaacacatcatgattcaacttggccatatatagcaattgatgtggccaaaaaagccaattttttctttaggaaaaaa |
34970826 |
T |
|
| Q |
101 |
ngtgacaagttaaaatgaagtggaacctttgacccaaaagatgaagaaaagaggtagaatctgtagttgtatatcgacaataataatctatgattgaggt |
200 |
Q |
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| T |
34970825 |
agtgacaagttaaaatgaagtggaacctttgacccaaaagatgaagaaaagaggtagaatctgtaattgtatatcgacaataataatctatgattga--- |
34970729 |
T |
|
| Q |
201 |
ttgagttaatggataaggagtttgaagtcttgatttaaacttnnnnnnnta--------aataataattaacaactacctattaacatttatctcgttnn |
292 |
Q |
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|||||| ||| ||||||||||||||||||||| | |||||||||||||||||| |||||||||| |||||||| |
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| T |
34970728 |
----------ggataaagagattgaagtcttgatttaaacttaaaaaataaataataataataataattaacaactaactattaacatagatctcgttaa |
34970639 |
T |
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| Q |
293 |
nnnnnnncactaacatttaataacaaatt----ttagtttggataaactcaattaatttcaacaagatttcattattcattatt |
372 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34970638 |
aaaaaaacactaacatttaataacaaattttaattagtttggataaactcaattaatttcaacaagatttcattattcattatt |
34970555 |
T |
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