View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4660_low_16 (Length: 341)
Name: NF4660_low_16
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 144 - 325
Target Start/End: Original strand, 39335040 - 39335221
Alignment:
| Q |
144 |
gttgactgaaccaaagcacctaatagttgcttcgtgctgcatgttaatgagattcaaaacttttcaatctgcctaggagttgtgagaaataaactcttta |
243 |
Q |
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| T |
39335040 |
gttgactgaaccaaagcacctaatagttgcttcgtgctgcatgttaatgagattcaaaacttttcaatctgcctaggagttgtgtgaaataaactcttca |
39335139 |
T |
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| Q |
244 |
ttgcgggttcttcaaataaaccagcaagatatcaagaagagttgttcatcattctcataagcaaaatatttaatccattcat |
325 |
Q |
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| T |
39335140 |
ttgcgggttcttcaaataaactaacaagatatcaataagagttgttcatcattctcataagcaaaatatttaatccattcat |
39335221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 6 - 147
Target Start/End: Original strand, 39334845 - 39334993
Alignment:
| Q |
6 |
aaaaataacttgcaactatcagttcatatgg-------accacaactaccaaagagacctaattaccattagtgtatttaattaaacctttgaaccatag |
98 |
Q |
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| T |
39334845 |
aaaaataacttacaactatccgttcatatggtagcaataccacaactcccaaagagacctaattaccattagtgtatctaattaagcctttgaaccatag |
39334944 |
T |
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| Q |
99 |
cgatctagattatcaagagagctaccttcaatatttaatttaaccgttg |
147 |
Q |
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| T |
39334945 |
cgatctagattatcaagagagctaccttcaatatttaatttaaccgttg |
39334993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 320
Target Start/End: Complemental strand, 11324335 - 11324270
Alignment:
| Q |
255 |
tcaaataaaccagcaagatatcaagaagagttgttcatcattctcataagcaaaatatttaatcca |
320 |
Q |
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| T |
11324335 |
tcaaatgaaccagcaagatatcaagaagagttacccatcattgttataagcaaaatgtttaatcca |
11324270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 142
Target Start/End: Original strand, 1963298 - 1963382
Alignment:
| Q |
59 |
aattaccattagtgtatttaattaaacctttgaacc-atagcgatctagattatcaagagagctaccttcaatatttaatttaac |
142 |
Q |
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| T |
1963298 |
aattaccattagtgtctctaattaaacctctgaacccatatcaacccggattaccaatagagctaccatcaacatttaatttaac |
1963382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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