View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4660_low_19 (Length: 326)
Name: NF4660_low_19
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 308
Target Start/End: Complemental strand, 42099688 - 42099375
Alignment:
| Q |
11 |
caaaggacatatgtgatgtgaagtcaaatctcttcatcattaaagggatccaccagtgaatatcacacactc---caca-------------ataaataa |
94 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | |||||| |
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| T |
42099688 |
caaaggacgtatgtgatgtgaagtcaaatctcttcatcattaaagggatccaccagtgaatatcacacacacatacacaccaataaaactccacaaataa |
42099589 |
T |
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| Q |
95 |
caaatatctttgaaaaaattaaggattgataactgacctgtgatctacctcatagagaagatcaagaatttgtttagaaggaagctgtaattgaggggaa |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42099588 |
caaatatctttgaaaaaattaaggattgataactgacctgtgatctacctcatagagaagatcaagaatttgtttagaaggaagctgtaattgaggggaa |
42099489 |
T |
|
| Q |
195 |
tgaagcctggtccgaagaggaaacaataacaaattcaatgatattaataattcaactgtttgtgtgaaaatggattagtttccatgtattgcttgaagta |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42099488 |
tgaagcctggtccgaagaggaaacaataacaaattcaatgatattaataattcaactgtttgtgtgaaaatggattagtttccatggattgcttgaagta |
42099389 |
T |
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| Q |
295 |
aaatttaaggtata |
308 |
Q |
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|||||||||||||| |
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| T |
42099388 |
aaatttaaggtata |
42099375 |
T |
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