View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4660_low_2 (Length: 634)
Name: NF4660_low_2
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 4e-89; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 418 - 623
Target Start/End: Complemental strand, 38320497 - 38320291
Alignment:
| Q |
418 |
cctctaagcgcttcactatttgtttggacgatatttgttaaggatgcgaccaattttggttgcttgcgggatacaatgaaatatcttgtcaattgttttt |
517 |
Q |
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| T |
38320497 |
cctctaagcgcttcactatttgcttggacgatatttgttaaggatgcgaccaattttggttgcttgcgggacacaatgaaatatcttgtgaagtgttttt |
38320398 |
T |
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| Q |
518 |
-aaaggctggccatgtaccaatggaatggagacaaagacttttaaaccaggccataattatcttctagatagtgagcataaacaattggcattttactag |
616 |
Q |
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| T |
38320397 |
taaaggctggccatgtatcaatggaatggagacaaagacttttaaaccagaccataattctcttcttgatagtgagcataaacaattggcattttactag |
38320298 |
T |
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| Q |
617 |
tctagaa |
623 |
Q |
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||||||| |
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| T |
38320297 |
tctagaa |
38320291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 148 - 265
Target Start/End: Complemental strand, 38320975 - 38320858
Alignment:
| Q |
148 |
ttcaagactatcgttatgcctaatggttttgcatttcgtcgtgggcttctttaaccaccctccttaggtgaggtatttagtcacatctttgagttggatg |
247 |
Q |
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| T |
38320975 |
ttcaagactatcgttatgcctaatggttttgcctttcgtcgtgggcttctttaactaccctccttaggtgaggtatttagtcacatctttgagttggatg |
38320876 |
T |
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| Q |
248 |
cagtattaattctgcatt |
265 |
Q |
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| T |
38320875 |
cagtattaattctgcatt |
38320858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 300 - 375
Target Start/End: Complemental strand, 38320574 - 38320499
Alignment:
| Q |
300 |
ttgtcttgtagttcaacctttttgtgacttagacccttatcatagtccttgtttgagcttcatatgattgttagta |
375 |
Q |
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| T |
38320574 |
ttgtcttgtagttcaacctttttgtgacttagacccttatcatagtccttgtttgagcttcatatgattgttagta |
38320499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 37 - 154
Target Start/End: Complemental strand, 38321584 - 38321468
Alignment:
| Q |
37 |
tgagttgaaccatgtaactctctctcagcctccctc----catgttatattatatactccttaaacaaatcttatttttt-atctaaggtaatatacctc |
131 |
Q |
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| T |
38321584 |
tgagttgaaccatgtagctctctctc--cctccctctcttcatgttatattatata----ttaaacaaatcttatttttttatctaaggtaatatacctc |
38321491 |
T |
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| Q |
132 |
gaacactaatgatcgcttcaaga |
154 |
Q |
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| T |
38321490 |
gaacattaatgatcgctccaaga |
38321468 |
T |
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