View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4660_low_22 (Length: 280)
Name: NF4660_low_22
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 19921548 - 19921429
Alignment:
| Q |
1 |
ctttttctcttaaattttaccctcttttgatacaaagtttgaacatttttcataaattaattattgcaattgattgacaatataaaatatctttacaata |
100 |
Q |
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| T |
19921548 |
ctttttctcttgaattttgctctcttttgatacaaagtcataacatttttcataaattgattattgcaattgattgacaatataaaatatctttacaata |
19921449 |
T |
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| Q |
101 |
acaatgcatatgaatttaat |
120 |
Q |
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| T |
19921448 |
acaatgcatatgaatttaat |
19921429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 181 - 239
Target Start/End: Complemental strand, 19920915 - 19920857
Alignment:
| Q |
181 |
agaccaattcaattcatatgatatagataattaaaaaagaagtaatgaaatatcatata |
239 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
19920915 |
agaccaattcaattcatatgatatggataattaaaaaagaagtaatgaaatatcatata |
19920857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 19921392 - 19921345
Alignment:
| Q |
142 |
ggaggttgacacacacacttatagtgtaatcttttttacagaccaatt |
189 |
Q |
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| T |
19921392 |
ggaggttgatacacacacttagagtgtaatcttttttacagaccaatt |
19921345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 40196629 - 40196580
Alignment:
| Q |
67 |
caattgattgacaatataaaatatctttacaataacaatgcatatgaatt |
116 |
Q |
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||||||||||||||||||||| || |||||| ||| |||| ||||||||| |
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| T |
40196629 |
caattgattgacaatataaaaaatatttacattaataatgtatatgaatt |
40196580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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