View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4660_low_24 (Length: 274)
Name: NF4660_low_24
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 6 - 259
Target Start/End: Complemental strand, 16908738 - 16908485
Alignment:
| Q |
6 |
agaagcaaaggctatttgatatggggttgggcaccacagcttctgatactagagcatggtgcagttggagctgtggtgactcattgtgggtggaacacta |
105 |
Q |
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| T |
16908738 |
agaaacaaaggctatttgatatggggttgggcaccacagcttctgatactagagcatggtgcagttggagctgttgtgactcattgtgggtggaacacta |
16908639 |
T |
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| Q |
106 |
ttatggaaagtgtaaatgcaggtttaccattggctacttggccattatttgctgaacagtttttcaatgagagattgttggttgatgtgttcaagattgg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
16908638 |
ttatggaaagtgtaaatgcaggtttaccattggctacttggccattgtttgctgaacagtttttcaatgagagattgttggttgatgtgttgaagattgg |
16908539 |
T |
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| Q |
206 |
tgtggcagttggtgcaaaagaatggagaaattggaatgagtttggggatgatgt |
259 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
16908538 |
tgtggcagttggagcaaaagaatggagaaattggaatgagtttggggatgatgt |
16908485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 14869926 - 14870174
Alignment:
| Q |
11 |
caaaggctatttgatatggggttgggcaccacagcttctgatactagagcatggtgcagttggagctgtggtgactcattgtgggtggaacactattatg |
110 |
Q |
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| T |
14869926 |
caaaggctatttgatatggggttgggcaccacaactgctgatactagagcatgctgcagttggagcagtggtgactcactgtggctggaacactattatg |
14870025 |
T |
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| Q |
111 |
gaaagtgtaaatgcaggtttaccattggctacttggccattatttgctgaacagtttttcaatgagagattgttggttgatgtgttcaagattggtgtgg |
210 |
Q |
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| T |
14870026 |
gaaagtgtaaatgcaggtttgtcattggcaacttggccattgtttgctgaacagtttttcaatgagagattgttggttgatgtgttgaagattggtgtgg |
14870125 |
T |
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| Q |
211 |
cagttggtgcaaaagaatggagaaattggaatgagtttggggatgatgt |
259 |
Q |
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| T |
14870126 |
cagttggagcaaaggaatggagaaactggaatgagtttggggatgatgt |
14870174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 5994979 - 5994740
Alignment:
| Q |
12 |
aaaggctatttgatatggggttgggcaccacagcttctgatactagagcatggtgcagttggagctgtggtgactcattgtgggtggaacactattatgg |
111 |
Q |
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|||||||||||||| ||||| ||||||||||||||| ||||||| ||| || |||| |||||| | |||| ||||||||| ||||||||| || | | |
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| T |
5994979 |
aaaggctatttgatttggggatgggcaccacagcttttgatacttgagaatcatgcaattggagggttagtgagtcattgtggttggaacactgttgttg |
5994880 |
T |
|
| Q |
112 |
aaagtgtaaatgcaggtttaccattggctacttggccattatttgctgaacagtttttcaatgagagattgttggttgatgtgttcaagattggtgtggc |
211 |
Q |
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||||||| |||| || |||||| | || ||||| |||||||||||||| ||||||||||||| | | | ||||||||||| || |||||||| | |
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| T |
5994879 |
aaagtgtgaatgttgggttaccaacagtgacatggcctttatttgctgaacattttttcaatgagaaacttgtagttgatgtgttgaaaattggtgttcc |
5994780 |
T |
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| Q |
212 |
agttggtgcaaaagaatggagaaattggaatgagtttggg |
251 |
Q |
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|| || || ||||||||||| |||||||||||||||||| |
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| T |
5994779 |
tgtgggagctaaagaatggaggaattggaatgagtttggg |
5994740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 251
Target Start/End: Complemental strand, 17572461 - 17572351
Alignment:
| Q |
141 |
acttggccattatttgctgaacagtttttcaatgagagattgttggttgatgtgttcaagattggtgtggcagttggtgcaaaagaatggagaaattgga |
240 |
Q |
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|||||||| || ||||||||||| ||||| ||||||| ||| | ||||||||||| | ||||| || | ||||| || ||||||||||||||||||| |
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| T |
17572461 |
acttggcctttgtttgctgaacatttttttaatgagaagttggttgttgatgtgttgagaattggggtatctgttggggccaaagaatggagaaattgga |
17572362 |
T |
|
| Q |
241 |
atgagtttggg |
251 |
Q |
| |
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||||||||||| |
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| T |
17572361 |
atgagtttggg |
17572351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 17620329 - 17620367
Alignment:
| Q |
213 |
gttggtgcaaaagaatggagaaattggaatgagtttggg |
251 |
Q |
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| T |
17620329 |
gttggggctaaagaatggagaaattggaatgagtttggg |
17620367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 251
Target Start/End: Complemental strand, 14710056 - 14709948
Alignment:
| Q |
143 |
ttggccattatttgctgaacagtttttcaatgaga-gattgttggttgatgtgttcaagattggtgtggcagttggtgcaaaagaatggagaaattggaa |
241 |
Q |
| |
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|||||| || |||||||| || ||||| ||||||| |||| || |||||||||| | ||||| ||| | ||||| || |||||||||||||||||||| |
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| T |
14710056 |
ttggcctttgtttgctgatcaattttttaatgagaagattatta-ttgatgtgttgagaattggggtgtctgttggggctaaagaatggagaaattggaa |
14709958 |
T |
|
| Q |
242 |
tgagtttggg |
251 |
Q |
| |
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|||||||||| |
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| T |
14709957 |
tgagtttggg |
14709948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 249
Target Start/End: Original strand, 12613769 - 12613877
Alignment:
| Q |
141 |
acttggccattatttgctgaacagtttttcaatgagagattgttggttgatgtgttcaagattggtgtggcagttggtgcaaaagaatggagaaattgga |
240 |
Q |
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|||||||| |||||||||||||| ||||| |||||| |||| ||||||| ||||| || ||||| ||| || | || | |||||||| |||||||| |
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| T |
12613769 |
acttggcctttatttgctgaacaattttttcatgagaaattggtggttgaagtgttaaaaattggggtgtcactagggattagagaatggaaaaattgga |
12613868 |
T |
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| Q |
241 |
atgagtttg |
249 |
Q |
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| T |
12613869 |
atgagtttg |
12613877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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