View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4660_low_25 (Length: 261)

Name: NF4660_low_25
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4660_low_25
NF4660_low_25
[»] chr7 (8 HSPs)
chr7 (126-211)||(10596225-10596315)
chr7 (137-215)||(23777262-23777345)
chr7 (18-57)||(27305596-27305635)
chr7 (150-215)||(19367294-19367364)
chr7 (140-170)||(31305384-31305414)
chr7 (126-187)||(23803160-23803221)
chr7 (18-46)||(23803129-23803157)
chr7 (124-168)||(33247077-33247121)
[»] chr6 (9 HSPs)
chr6 (87-215)||(18271860-18271988)
chr6 (18-62)||(18271792-18271836)
chr6 (126-170)||(20836819-20836863)
chr6 (130-189)||(12852094-12852153)
chr6 (132-183)||(33590868-33590919)
chr6 (182-215)||(9619423-9619456)
chr6 (124-169)||(33427866-33427911)
chr6 (18-62)||(20836726-20836770)
chr6 (183-211)||(31350951-31350979)
[»] chr2 (9 HSPs)
chr2 (127-215)||(27080869-27080957)
chr2 (130-212)||(1483904-1483991)
chr2 (87-169)||(5722939-5723021)
chr2 (139-189)||(7836757-7836807)
chr2 (151-215)||(14108565-14108634)
chr2 (18-62)||(14108685-14108729)
chr2 (87-131)||(33381897-33381941)
chr2 (137-205)||(31099028-31099101)
chr2 (18-62)||(27081002-27081046)
[»] chr5 (10 HSPs)
chr5 (137-215)||(43259695-43259778)
chr5 (137-206)||(5791987-5792060)
chr5 (119-178)||(10476390-10476449)
chr5 (137-215)||(35996035-35996118)
chr5 (183-215)||(19914547-19914579)
chr5 (183-215)||(27514337-27514369)
chr5 (143-189)||(29445308-29445354)
chr5 (18-62)||(19914422-19914466)
chr5 (172-212)||(22921030-22921070)
chr5 (18-58)||(39797409-39797449)
[»] chr3 (8 HSPs)
chr3 (138-212)||(55216628-55216707)
chr3 (125-189)||(41264960-41265024)
chr3 (183-215)||(8473119-8473151)
chr3 (137-215)||(26661866-26661949)
chr3 (18-62)||(40654169-40654214)
chr3 (183-215)||(29630007-29630039)
chr3 (18-62)||(33186242-33186286)
chr3 (18-46)||(33186278-33186306)
[»] chr4 (12 HSPs)
chr4 (111-215)||(20678382-20678484)
chr4 (126-215)||(19747363-19747456)
chr4 (126-215)||(19792350-19792443)
chr4 (87-212)||(7672701-7672824)
chr4 (137-215)||(42540348-42540431)
chr4 (18-62)||(43364185-43364229)
chr4 (137-212)||(43955440-43955515)
chr4 (131-209)||(8483692-8483770)
chr4 (126-189)||(3257628-3257691)
chr4 (137-172)||(10382039-10382074)
chr4 (18-61)||(23780341-23780384)
chr4 (126-212)||(10395256-10395342)
[»] chr1 (5 HSPs)
chr1 (125-189)||(5993776-5993840)
chr1 (87-189)||(45376571-45376668)
chr1 (26-61)||(32567183-32567218)
chr1 (126-183)||(28924941-28924998)
chr1 (126-215)||(29321386-29321475)
[»] scaffold0024 (3 HSPs)
scaffold0024 (85-161)||(60186-60257)
scaffold0024 (166-211)||(60247-60292)
scaffold0024 (18-62)||(60118-60162)
[»] chr8 (2 HSPs)
chr8 (25-56)||(11781680-11781711)
chr8 (18-62)||(26099364-26099408)
[»] scaffold0603 (1 HSPs)
scaffold0603 (137-169)||(7313-7345)
[»] scaffold0086 (1 HSPs)
scaffold0086 (126-170)||(20587-20631)


Alignment Details
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 126 - 211
Target Start/End: Original strand, 10596225 - 10596315
Alignment:
Q  126 gaactgaaccaaactgtttcgaatcgaactgaactgttttgaactaaactgaattgtttc-----agtttcagaactgttagtaatggttc 211  Q
    |||||||||  |||||||| |||||||| |||||||||||||||||||||||| ||||||     ||||||||||||||||||||||||||    
T  10596225 gaactgaactgaactgttttgaatcgaattgaactgttttgaactaaactgaactgtttcagttaagtttcagaactgttagtaatggttc 10596315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 23777262 - 23777345
Alignment:
Q  137 aactgtttcgaatcgaactgaactgttttgaactaaactgaattgt-----ttcagtttcagaactgttagtaatggttcagtt 215  Q
    ||||||||||||||||||||||||||||||||   ||||||| |||     ||||||||||||||||||||||||| |||||||    
T  23777262 aactgtttcgaatcgaactgaactgttttgaaaagaactgaactgtttcagttcagtttcagaactgttagtaatgattcagtt 23777345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 27305596 - 27305635
Alignment:
Q  18 tgaactgtttcaaaccgaactgaattgttattattgatac 57  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  27305596 tgaactgtttcaaaccgaactgaattattattattgatac 27305635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 19367294 - 19367364
Alignment:
Q  150 cgaactgaactgttttgaactaaactgaattgttt-----cagtttcagaactgttagtaatggttcagtt 215  Q
    |||||||||||||||| |||| ||||||| |||||     |||||||||||||||| ||||||||||||||    
T  19367294 cgaactgaactgttttcaactgaactgaactgtttaagttcagtttcagaactgttggtaatggttcagtt 19367364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 170
Target Start/End: Original strand, 31305384 - 31305414
Alignment:
Q  140 tgtttcgaatcgaactgaactgttttgaact 170  Q
    |||||||||||||||||||||||||||||||    
T  31305384 tgtttcgaatcgaactgaactgttttgaact 31305414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 187
Target Start/End: Original strand, 23803160 - 23803221
Alignment:
Q  126 gaactgaaccaaactgtttcgaatcgaactgaactgttttgaactaaactgaattgtttcag 187  Q
    |||||||| | ||||||||  |||||||||||| ||||||||||  ||||||||| ||||||    
T  23803160 gaactgaatcgaactgtttataatcgaactgaattgttttgaaccgaactgaattatttcag 23803221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 23803129 - 23803157
Alignment:
Q  18 tgaactgtttcaaaccgaactgaattgtt 46  Q
    |||||||||||||||||||||||||||||    
T  23803129 tgaactgtttcaaaccgaactgaattgtt 23803157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 33247121 - 33247077
Alignment:
Q  124 ctgaactgaaccaaactgtttcgaatcgaactgaactgttttgaa 168  Q
    |||||||||||| |||||||| |||||||||| || |||||||||    
T  33247121 ctgaactgaaccgaactgttttgaatcgaactaaattgttttgaa 33247077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 215
Target Start/End: Original strand, 18271860 - 18271988
Alignment:
Q  87 aaattgaattttagtcatcgaactgaactgttccgagctgaactgaaccaaactgtttcgaatcgaactgaactgttttgaactaaactgaattgtttca 186  Q
    ||||||||||||||| |  ||||||||||||||||| ||| |||||||     ||||||||||||||||||||| ||||||||| || |||| || ||||    
T  18271860 aaattgaattttagttactgaactgaactgttccgaactgcactgaac-----tgtttcgaatcgaactgaactattttgaactgaattgaactgcttca 18271954  T
Q  187 gt-----ttcagaactgttagtaatggttcagtt 215  Q
    ||     |||||||||||||||||||||| ||||    
T  18271955 gttcagattcagaactgttagtaatggtttagtt 18271988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 18271792 - 18271836
Alignment:
Q  18 tgaactgtttcaaaccgaactgaattgttattattgatacctttg 62  Q
    ||||||||| | ||| |||||||||||||||||||||||||||||    
T  18271792 tgaactgttccgaactgaactgaattgttattattgatacctttg 18271836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 20836819 - 20836863
Alignment:
Q  126 gaactgaaccaaactgtttcgaatcgaactgaactgttttgaact 170  Q
    |||||||||  ||||||||||||||||| ||||||||||||||||    
T  20836819 gaactgaactgaactgtttcgaatcgaattgaactgttttgaact 20836863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 12852153 - 12852094
Alignment:
Q  130 tgaaccaaactgtttcgaatcgaactgaactgttttgaactaaactgaattgtttcagtt 189  Q
    |||||| ||||||||| |||||||||||||| ||||||||  ||| ||| ||||||||||    
T  12852153 tgaaccgaactgtttcaaatcgaactgaactattttgaaccgaaccgaactgtttcagtt 12852094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 183
Target Start/End: Original strand, 33590868 - 33590919
Alignment:
Q  132 aaccaaactgtttcgaatcgaactgaactgttttgaactaaactgaattgtt 183  Q
    |||||||||||||| |||| |||| |||||||||||||  ||||||||||||    
T  33590868 aaccaaactgtttctaatcaaacttaactgttttgaaccgaactgaattgtt 33590919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 9619456 - 9619423
Alignment:
Q  182 tttcagtttcagaactgttagtaatggttcagtt 215  Q
    |||||||||||||| |||||||||||||||||||    
T  9619456 tttcagtttcagaattgttagtaatggttcagtt 9619423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 33427866 - 33427911
Alignment:
Q  124 ctgaactgaaccaaactgtttcgaatcgaactgaactgttttgaac 169  Q
    |||||||||||| |||| ||||||||| ||||||| ||||||||||    
T  33427866 ctgaactgaaccgaactatttcgaatcaaactgaattgttttgaac 33427911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 20836726 - 20836770
Alignment:
Q  18 tgaactgtttcaaaccgaactgaattgttattattgatacctttg 62  Q
    ||||||||| ||||| ||| |||| ||||||||||||||||||||    
T  20836726 tgaactgttccaaactgaattgaactgttattattgatacctttg 20836770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 211
Target Start/End: Complemental strand, 31350979 - 31350951
Alignment:
Q  183 ttcagtttcagaactgttagtaatggttc 211  Q
    |||||||||||||||||||||||||||||    
T  31350979 ttcagtttcagaactgttagtaatggttc 31350951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 27080957 - 27080869
Alignment:
Q  127 aactgaaccaaactgtttcgaatcgaactgaactgttttgaactaaactgaattgtttcagtttcagaactgttagtaatggttcagtt 215  Q
    ||||||||  |||||||||||||||||||||||||||||||||| |||||  |   |||||||||  ||||||||||||||||||||||    
T  27080957 aactgaactgaactgtttcgaatcgaactgaactgttttgaactgaactgtttcagttcagtttcttaactgttagtaatggttcagtt 27080869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 212
Target Start/End: Complemental strand, 1483991 - 1483904
Alignment:
Q  130 tgaaccaaactgtttcgaatcgaactgaactgttttgaactaaactgaattgt-----ttcagtttcagaactgttagtaatggttca 212  Q
    |||||| ||||||||| |||||||| ||||||||||||||  |||| ||||||     ||||||||||||| ||||||||||||||||    
T  1483991 tgaaccgaactgtttcaaatcgaacggaactgttttgaaccgaactaaattgtttcaattcagtttcagaattgttagtaatggttca 1483904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 169
Target Start/End: Original strand, 5722939 - 5723021
Alignment:
Q  87 aaattgaattttagtcatcgaactgaactgttccgagctgaactgaaccaaactgtttcgaatcgaactgaactgttttgaac 169  Q
    ||||||||||||||| | ||||||||||||  | |  | ||||||||||||||| |||| ||||||| |||||||||||||||    
T  5722939 aaattgaattttagttaccgaactgaactgaactgttccgaactgaaccaaactttttctaatcgaaatgaactgttttgaac 5723021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 7836807 - 7836757
Alignment:
Q  139 ctgtttcgaatcgaactgaactgttttgaactaaactgaattgtttcagtt 189  Q
    ||||||||||||||| |||||||||||||| | ||||||||||||||||||    
T  7836807 ctgtttcgaatcgaattgaactgttttgaaatgaactgaattgtttcagtt 7836757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 14108634 - 14108565
Alignment:
Q  151 gaactgaactgttttgaactaaactgaattgt-----ttcagtttcagaactgttagtaatggttcagtt 215  Q
    |||||||| ||||| |||| ||||||||||||     || ||||||||||||||||||||||||||||||    
T  14108634 gaactgaattgtttcgaaccaaactgaattgtttgagttaagtttcagaactgttagtaatggttcagtt 14108565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 14108729 - 14108685
Alignment:
Q  18 tgaactgtttcaaaccgaactgaattgttattattgatacctttg 62  Q
    ||||||||| ||||| |||||||| ||||||||||||||||||||    
T  14108729 tgaactgttccaaactgaactgaactgttattattgatacctttg 14108685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 33381941 - 33381897
Alignment:
Q  87 aaattgaattttagtcatcgaactgaactgttccgagctgaactg 131  Q
    ||||||||||||||| | |||||||||||||||||| ||||||||    
T  33381941 aaattgaattttagttaccgaactgaactgttccgaactgaactg 33381897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 31099028 - 31099101
Alignment:
Q  137 aactgtttcgaatcgaactgaactgttttgaactaaactgaattgt-----ttcagtttcagaactgttagtaa 205  Q
    ||||||||||||| |||| ||||||||||||||| ||| ||| |||     ||||||||||||| |||||||||    
T  31099028 aactgtttcgaattgaaccgaactgttttgaactgaaccgaactgttttagttcagtttcagaattgttagtaa 31099101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 27081046 - 27081002
Alignment:
Q  18 tgaactgtttcaaaccgaactgaattgttattattgatacctttg 62  Q
    ||||||||||||||| || ||||| | ||||||||||||||||||    
T  27081046 tgaactgtttcaaactgatctgaactattattattgatacctttg 27081002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 43259778 - 43259695
Alignment:
Q  137 aactgtttcgaatcgaactgaactgttttgaactaaactgaattgtttcag-----tttcagaactgttagtaatggttcagtt 215  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||||||     ||||||||||||||||||| ||||||||    
T  43259778 aactgtttcgaatcgaactaaactgtttcgaactgaactgaattgtttcagttcaatttcagaactgttagtaattgttcagtt 43259695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 5791987 - 5792060
Alignment:
Q  137 aactgtttcgaatcgaactgaactgttttgaactaaactgaattgt----ttcagtttcagaactgttagtaat 206  Q
    |||||||||||||||||||||||||||||||||  ||||||| |||    ||||||||||||||||||| ||||    
T  5791987 aactgtttcgaatcgaactgaactgttttgaaccgaactgaactgtttcattcagtttcagaactgttaataat 5792060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 178
Target Start/End: Complemental strand, 10476449 - 10476390
Alignment:
Q  119 ccgagctgaactgaaccaaactgtttcgaatcgaactgaactgttttgaactaaactgaa 178  Q
    |||| |||||||||| | |||||||||||||||||||||||||||||||||  |||||||    
T  10476449 ccgaactgaactgaatcgaactgtttcgaatcgaactgaactgttttgaaccgaactgaa 10476390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 35996035 - 35996118
Alignment:
Q  137 aactgtttcgaatcgaactgaactgttttgaactaaactgaattgt-----ttcagtttcagaactgttagtaatggttcagtt 215  Q
    ||||||||||||||||||  |||||||||||||| |||  || |||     ||||||||||||| |||||||||||||||||||    
T  35996035 aactgtttcgaatcgaaccaaactgttttgaactgaacaaaactgtttcagttcagtttcagaattgttagtaatggttcagtt 35996118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 19914547 - 19914579
Alignment:
Q  183 ttcagtttcagaactgttagtaatggttcagtt 215  Q
    |||||||||||||||||||||||||||||||||    
T  19914547 ttcagtttcagaactgttagtaatggttcagtt 19914579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 27514369 - 27514337
Alignment:
Q  183 ttcagtttcagaactgttagtaatggttcagtt 215  Q
    |||||||||||||||||||||||||||||||||    
T  27514369 ttcagtttcagaactgttagtaatggttcagtt 27514337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 29445308 - 29445354
Alignment:
Q  143 ttcgaatcgaactgaactgttttgaactaaactgaattgtttcagtt 189  Q
    |||||||||||||||||||||||||||| |||  || ||||||||||    
T  29445308 ttcgaatcgaactgaactgttttgaactgaacctaactgtttcagtt 29445354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 19914422 - 19914466
Alignment:
Q  18 tgaactgtttcaaaccgaactgaattgttattattgatacctttg 62  Q
    |||||| ||||||||| ||||||| | ||||||||||||||||||    
T  19914422 tgaactatttcaaaccaaactgaactattattattgatacctttg 19914466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 212
Target Start/End: Original strand, 22921030 - 22921070
Alignment:
Q  172 aactgaattgtttcagtttcagaactgttagtaatggttca 212  Q
    ||||||||||  |||||||||||||||||| ||||||||||    
T  22921030 aactgaattgaatcagtttcagaactgttaataatggttca 22921070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 39797449 - 39797409
Alignment:
Q  18 tgaactgtttcaaaccgaactgaattgttattattgatacc 58  Q
    |||||||||||||||||||| ||| ||||||||||| ||||    
T  39797449 tgaactgtttcaaaccgaaccgaactgttattattggtacc 39797409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 212
Target Start/End: Complemental strand, 55216707 - 55216628
Alignment:
Q  138 actgtttcgaatcgaactgaactgttttgaactaaactgaattgt-----ttcagtttcagaactgttagtaatggttca 212  Q
    ||||||||||||||||||||||| ||||||||| ||||||| |||     ||||||||||||||||||||||||||||||    
T  55216707 actgtttcgaatcgaactgaactattttgaactgaactgaactgtttcagttcagtttcagaactgttagtaatggttca 55216628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 41264960 - 41265024
Alignment:
Q  125 tgaactgaaccaaactgtttcgaatcgaactgaactgttttgaactaaactgaattgtttcagtt 189  Q
    ||||| |||||||||||||| ||||||| |||||||||||| |||| || |||| ||||||||||    
T  41264960 tgaaccgaaccaaactgttttgaatcgagctgaactgttttaaactgaattgaactgtttcagtt 41265024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 8473151 - 8473119
Alignment:
Q  183 ttcagtttcagaactgttagtaatggttcagtt 215  Q
    |||||||||||||||||||||||||||||||||    
T  8473151 ttcagtttcagaactgttagtaatggttcagtt 8473119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 26661949 - 26661866
Alignment:
Q  137 aactgtttcgaatcgaactgaactgttttgaactaaactgaattgt-----ttcagtttcagaactgttagtaatggttcagtt 215  Q
    ||||||||  ||||||||| |||| ||||||||| |||||||||||     |||||||||  |||||||| |||||||||||||    
T  26661949 aactgttttaaatcgaactaaactattttgaactgaactgaattgtttctgttcagtttccaaactgttaataatggttcagtt 26661866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 40654169 - 40654214
Alignment:
Q  18 tgaactgtttcaaaccg-aactgaattgttattattgatacctttg 62  Q
    |||||||||||||| || ||||||| ||||||||||||||||||||    
T  40654169 tgaactgtttcaaatcggaactgaactgttattattgatacctttg 40654214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 29630039 - 29630007
Alignment:
Q  183 ttcagtttcagaactgttagtaatggttcagtt 215  Q
    |||||||| ||||||||||||||||||||||||    
T  29630039 ttcagtttgagaactgttagtaatggttcagtt 29630007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 33186286 - 33186242
Alignment:
Q  18 tgaactgtttcaaaccgaactgaattgttattattgatacctttg 62  Q
    |||| |||| |||||  ||||||||||||||||||||||||||||    
T  33186286 tgaattgttccaaactaaactgaattgttattattgatacctttg 33186242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 33186306 - 33186278
Alignment:
Q  18 tgaactgtttcaaaccgaactgaattgtt 46  Q
    |||||||||||||||||||||||||||||    
T  33186306 tgaactgtttcaaaccgaactgaattgtt 33186278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 111 - 215
Target Start/End: Original strand, 20678382 - 20678484
Alignment:
Q  111 gaactgttccgagctgaactgaaccaaactgtttcgaatcgaactgaactgttttgaactaaactgaattgtttcagtttcagaactgttagtaatggtt 210  Q
    |||||||||||| ||||  |||||| |||| ||||||||| ||||||||||||||||||| ||||   ||| ||||||||||||| | || |||||||||    
T  20678382 gaactgttccgaactga--tgaaccgaactatttcgaatccaactgaactgttttgaactgaactattttggttcagtttcagaattattggtaatggtt 20678479  T
Q  211 cagtt 215  Q
    |||||    
T  20678480 cagtt 20678484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 215
Target Start/End: Complemental strand, 19747456 - 19747363
Alignment:
Q  126 gaactgaaccaaactgtttcgaatcgaactgaactgttttgaactaaactgaattgtt----tcagtttcagaactgttagtaatggttcagtt 215  Q
    ||||| ||||||||| ||| |||| |||||||||||||| ||||  ||||||| ||||    ||||||||||||||||||||||||||||||||    
T  19747456 gaactaaaccaaactattttgaatagaactgaactgtttcgaacagaactgaactgttcagttcagtttcagaactgttagtaatggttcagtt 19747363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 215
Target Start/End: Original strand, 19792350 - 19792443
Alignment:
Q  126 gaactgaaccaaactgtttcgaatcgaactgaactgttttgaactaaactgaattgtt----tcagtttcagaactgttagtaatggttcagtt 215  Q
    ||||| ||||||||| ||| |||| |||||||||||||| ||||  ||||||| ||||    ||||||||||||||||||||||||||||||||    
T  19792350 gaactaaaccaaactattttgaatagaactgaactgtttcgaacagaactgaactgttcagttcagtttcagaactgttagtaatggttcagtt 19792443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 212
Target Start/End: Original strand, 7672701 - 7672824
Alignment:
Q  87 aaattgaattttagtcatcgaactgaactgttccgagctgaactgaaccaaactgtttcgaatcgaactgaactgttttgaactaaactgaattgt---- 182  Q
    ||||||||||||||| | | |||||||||||| ||| |||||||||||     ||||||  ||||||||||||| ||||||| | |||||||||||        
T  7672701 aaattgaattttagttaccaaactgaactgtttcgaactgaactgaac-----tgtttc--atcgaactgaactattttgaattgaactgaattgtttca 7672793  T
Q  183 -ttcagtttcagaactgttagtaatggttca 212  Q
     |||||||||| |||||||||||||||||||    
T  7672794 gttcagtttcacaactgttagtaatggttca 7672824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 215
Target Start/End: Original strand, 42540348 - 42540431
Alignment:
Q  137 aactgtttcgaatcgaactgaactgttttgaactaaactgaattgttt-----cagtttcagaactgttagtaatggttcagtt 215  Q
    ||||||||| | |||||||||||||||||||| | |||||||||| ||     |||||||||||||||||||||||||||||||    
T  42540348 aactgtttcaagtcgaactgaactgttttgaattgaactgaattgcttcagtccagtttcagaactgttagtaatggttcagtt 42540431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 43364229 - 43364185
Alignment:
Q  18 tgaactgtttcaaaccgaactgaattgttattattgatacctttg 62  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||    
T  43364229 tgaactgttttaaaccgaactgaactgttattattgatacctttg 43364185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 43955515 - 43955440
Alignment:
Q  137 aactgtttcgaatcgaactgaactgttttgaactaaactgaattgtttcagtttcagaactgttagtaatggttca 212  Q
    ||||||||| ||| |||| ||||||||||||||  ||  ||| |||||||||||||||| ||||||||||| ||||    
T  43955515 aactgtttcaaattgaaccgaactgttttgaaccgaatcgaactgtttcagtttcagaattgttagtaatgattca 43955440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 8483692 - 8483770
Alignment:
Q  131 gaaccaaactgtttcgaatcgaactgaactgttttgaactaaactgaattgtttcagtttcagaactgttagtaatggt 209  Q
    |||||||||||||| ||||| |||   | ||||||||||||||| |||||||||||||| || || |||||| ||||||    
T  8483692 gaaccaaactgtttggaatcaaaccttattgttttgaactaaaccgaattgtttcagttccaaaattgttagcaatggt 8483770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 189
Target Start/End: Complemental strand, 3257691 - 3257628
Alignment:
Q  126 gaactgaaccaaactgtttcgaatcgaactgaactgttttgaactaaactgaattgtttcagtt 189  Q
    ||||||||| |||| ||||  |||||||||||||||||||||| | ||| ||| ||||||||||    
T  3257691 gaactgaactaaacggttttaaatcgaactgaactgttttgaaatgaaccgaactgtttcagtt 3257628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 172
Target Start/End: Original strand, 10382039 - 10382074
Alignment:
Q  137 aactgtttcgaatcgaactgaactgttttgaactaa 172  Q
    |||||||||||||||||||||| |||||||||||||    
T  10382039 aactgtttcgaatcgaactgaattgttttgaactaa 10382074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 23780341 - 23780384
Alignment:
Q  18 tgaactgtttcaaaccgaactgaattgttattattgataccttt 61  Q
    ||||||||||| ||| |||| |||||||||||||||||||||||    
T  23780341 tgaactgtttcgaactgaaccgaattgttattattgataccttt 23780384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 10395342 - 10395256
Alignment:
Q  126 gaactgaaccaaactgtttcgaatcgaactgaactgttttgaactaaactgaattgtttcagtttcagaactgttagtaatggttca 212  Q
    |||||||||  ||| ||||| |||||||||||||||||| | ||| |||||  |   |||||||| | |||||||||||||||||||    
T  10395342 gaactgaactgaacagtttcaaatcgaactgaactgtttaggactgaactgtttcagttcagtttgaaaactgttagtaatggttca 10395256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 5993776 - 5993840
Alignment:
Q  125 tgaactgaaccaaactgtttcgaatcgaactgaactgttttgaactaaactgaattgtttcagtt 189  Q
    ||||||||||| ||||||||||||||||| |||||||||||||||  ||||||| ||||||||||    
T  5993776 tgaactgaaccgaactgtttcgaatcgaattgaactgttttgaaccgaactgaactgtttcagtt 5993840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 87 - 189
Target Start/End: Original strand, 45376571 - 45376668
Alignment:
Q  87 aaattgaattttagtcatcgaactgaactgttccgagctgaactgaaccaaactgtttcgaatcgaactgaactgttttgaactaaactgaattgtttca 186  Q
    ||||||||||||||| |   ||||||| |||||||| ||||| ||||| |     ||||||||| ||||||||||||||||||| ||||||| ||| |||    
T  45376571 aaattgaattttagttactaaactgaaatgttccgaactgaattgaacta-----tttcgaatcaaactgaactgttttgaactgaactgaactgtatca 45376665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 61
Target Start/End: Original strand, 32567183 - 32567218
Alignment:
Q  26 ttcaaaccgaactgaattgttattattgataccttt 61  Q
    |||||||||||||||| |||||||||||||||||||    
T  32567183 ttcaaaccgaactgaactgttattattgataccttt 32567218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 28924998 - 28924941
Alignment:
Q  126 gaactgaaccaaactgtttcgaatcgaactgaactgttttgaactaaactgaattgtt 183  Q
    |||||||||| |||| |||||||| | |||||||||||||||||  ||||||| ||||    
T  28924998 gaactgaaccgaactatttcgaatgggactgaactgttttgaaccgaactgaactgtt 28924941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 215
Target Start/End: Original strand, 29321386 - 29321475
Alignment:
Q  126 gaactgaaccaaactgtttcgaatcgaactgaactgttttgaactaaactgaattgtttcagtttcagaactgttagtaatggttcagtt 215  Q
    |||||||||| ||||| ||| ||||||||  |||||||||||||  |||||  |   |||||||||| || ||||||||| |||||||||    
T  29321386 gaactgaaccgaactggttctaatcgaaccaaactgttttgaaccgaactgtttctgttcagtttcaaaattgttagtaacggttcagtt 29321475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 161
Target Start/End: Original strand, 60186 - 60257
Alignment:
Q  85 ttaaattgaattttagtcatcgaactgaactgttccgagctgaactgaaccaaactgtttcgaatcgaactgaactg 161  Q
    ||||||||||||||||| |  ||||||||||||||||| ||||||||     |||||||||||||||||||||||||    
T  60186 ttaaattgaattttagttacagaactgaactgttccgaactgaactg-----aactgtttcgaatcgaactgaactg 60257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 211
Target Start/End: Original strand, 60247 - 60292
Alignment:
Q  166 gaactaaactgaattgtttcagtttcagaactgttagtaatggttc 211  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||    
T  60247 gaactgaactgaattgtttcagtttcagaactattagtaatggttc 60292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 60118 - 60162
Alignment:
Q  18 tgaactgtttcaaaccgaactgaattgttattattgatacctttg 62  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||    
T  60118 tgaactgtttcaaactgaactgaactgttattattgatacctttg 60162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 56
Target Start/End: Original strand, 11781680 - 11781711
Alignment:
Q  25 tttcaaaccgaactgaattgttattattgata 56  Q
    ||||||||||||||||||||||||||||||||    
T  11781680 tttcaaaccgaactgaattgttattattgata 11781711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 26099364 - 26099408
Alignment:
Q  18 tgaactgtttcaaaccgaactgaattgttattattgatacctttg 62  Q
    ||||||||| ||||| |||||||| ||||||||||||||| ||||    
T  26099364 tgaactgttacaaactgaactgaactgttattattgatacatttg 26099408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 169
Target Start/End: Original strand, 7313 - 7345
Alignment:
Q  137 aactgtttcgaatcgaactgaactgttttgaac 169  Q
    |||||||||||||||||||||||||||| ||||    
T  7313 aactgtttcgaatcgaactgaactgtttcgaac 7345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 20631 - 20587
Alignment:
Q  126 gaactgaaccaaactgtttcgaatcgaactgaactgttttgaact 170  Q
    |||| |||| ||||| |||||||| ||||||||||||||||||||    
T  20631 gaacggaactaaactatttcgaattgaactgaactgttttgaact 20587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University