View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4660_low_29 (Length: 253)
Name: NF4660_low_29
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660_low_29 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 51 - 253
Target Start/End: Original strand, 39945232 - 39945431
Alignment:
| Q |
51 |
aaattgaatattggagctaataaaattcacttcatgaccgtgaaaagaaaactatttactacctataatggaaattacaaggcgatctcaatagactgag |
150 |
Q |
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| T |
39945232 |
aaattgaatattggagctaataaaattcacttcatgaccgtgaaaagaaaactatttac---ctataatggaaattacaaggcgatctcaatagaccgag |
39945328 |
T |
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| Q |
151 |
agaaggttaaccaaactgatgaacatagtcttgtcacaataaaagaggagtaggactttcgaacactctgacatggaatatttgactttttaacgaataa |
250 |
Q |
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| T |
39945329 |
agaaggttaaccaaactgatgaacataatattgtcacaataaaagaggagtagtactttcaaacactctgacatggaatatttgaccttttaacgaataa |
39945428 |
T |
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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 224
Target Start/End: Original strand, 39945448 - 39945520
Alignment:
| Q |
153 |
aaggttaaccaaactgatgaacatagtcttgtcacaataaaagagga-gtaggactttcgaacactctgacat |
224 |
Q |
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| T |
39945448 |
aaggttaaccaaaccggtgaagatagtcttgtcgcaataaaacaagaggtagtactttcgaagactctgacat |
39945520 |
T |
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