View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4660_low_3 (Length: 555)
Name: NF4660_low_3
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 12 - 540
Target Start/End: Original strand, 45616593 - 45617122
Alignment:
| Q |
12 |
atgagatttggctatgaaaagttaacaagtaaaaggatgatgagagtaggaaaacgttgcatttgggtgaagtctttgaatggaaaactacgtggtctaa |
111 |
Q |
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| T |
45616593 |
atgagatttggctatgaaaagttaacaagtaaaaggatgatgagagtaggaaaacgttgcatttgggtgaagtctttgaatggaaaactacgtggtctaa |
45616692 |
T |
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| Q |
112 |
ggttatcacgttctaggaagtttttctctacaatgctcttttcaactagaattgtaagaatctacaatgatattgtgaacaaaattatgaacatggaaaa |
211 |
Q |
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| T |
45616693 |
ggttatcacgttctaggaagtttttctctacaatgctctattcaactagaattgtaagaatctacaatgatattgtgaacaaaattatgaacatggaaaa |
45616792 |
T |
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| Q |
212 |
cagttatccagttattgttctacctactcaatggggtcttcctgttctgtctcacccctcagttgtttgcagaaggagtgtaatggtccctccaaacag- |
310 |
Q |
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| T |
45616793 |
cagttatccagttattgttctacctactcaatggggtcttcctgttctgtctcatccctcagttgtttgcagaaggagtgtaatggtccctccaaacaga |
45616892 |
T |
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| Q |
311 |
aaagtgactttctattagtccttttcaattcattcatttctgctcaataaacttctatgctattgctatggaatatgcatgttgtggttattgactttta |
410 |
Q |
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| T |
45616893 |
aaagtgactttctattagtccttttcaattcattcatttctgctcaataaacttctatgctattgctatggaatatgcatgttgtggttattgactttta |
45616992 |
T |
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| Q |
411 |
ttctttttcattcatgttatagtctaattggattggcattcatccattttgggaaaaattactatgcaagcaaacgttttattactaagttttttgcttc |
510 |
Q |
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| T |
45616993 |
ttctttttcattcatgttatagtctaattggattggcattcatccattttgggaaaaattactatgcaagcaaacgttttattactaagttttttgcttc |
45617092 |
T |
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| Q |
511 |
tttgatgtgcaattttttctgtaactttat |
540 |
Q |
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| T |
45617093 |
tttgatgtgcaattttttctgtaactttat |
45617122 |
T |
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