View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4660_low_35 (Length: 241)
Name: NF4660_low_35
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 46323250 - 46323471
Alignment:
| Q |
1 |
cctatatgttaatactatagttgagactacaatatcacccttgaactatatctatgagtcatactcaatggttcgtaagttgttttgagtaacttaatag |
100 |
Q |
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| T |
46323250 |
cctatatgttaatactatagttgagactacaatatcacccttgaactatatctatgagtcatactcaatggttcgtaagttgttttgagtaacttaatag |
46323349 |
T |
|
| Q |
101 |
agcctaaatcaaaattggaacatttatggttgctcagttaattctaaaacccagcatgactcaatcaagaatgaattattgttcattctaaggagtaata |
200 |
Q |
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| T |
46323350 |
agcctaaatcaaaatcggaacatttatggttgctcagttaattctaaaacccagcatgactcaatcaagaatgaattattgttcattctaaggagtaata |
46323449 |
T |
|
| Q |
201 |
ttaaatatgttagggtctacct |
222 |
Q |
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||||| |||||||||||||||| |
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| T |
46323450 |
ttaaacatgttagggtctacct |
46323471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 46327651 - 46327722
Alignment:
| Q |
97 |
atagagcctaaatcaaaattggaacatttatggttgctcagttaattctaaaacccagcatgactcaatcaa |
168 |
Q |
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| T |
46327651 |
atagagcctaaatcaaaataggaactttaatggtggcttaggtaattctacaagcaagcatgactcgatcaa |
46327722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 164
Target Start/End: Complemental strand, 46523742 - 46523676
Alignment:
| Q |
98 |
tagagcctaaatcaaaattggaacatttatggttgctcagttaattctaaaacccagcatgactcaa |
164 |
Q |
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||||| ||||||||||| |||| ||||||||| |||||||||||||||| | |||||||||||| |
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| T |
46523742 |
tagagtctaaatcaaaagaggaaaccttatggttgatcagttaattctaaaagcaagcatgactcaa |
46523676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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