View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4660_low_38 (Length: 237)
Name: NF4660_low_38
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 55133482 - 55133672
Alignment:
| Q |
1 |
tttacgtgaataatgtgaatcgcgtgtgattccatgcatgnnnnnnnnntagtacaaaagatgaaatgccttttgctttgtcattgatcatattttatgc |
100 |
Q |
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| T |
55133482 |
tttacgtgaataatgtgaatcgcgtgtgattccatgcatgaaaaaaa--tagtacaaaagatgaaatgccttttgctttgtcattgatcatattttatgc |
55133579 |
T |
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| Q |
101 |
aaatgcaaatgaatgaagaaggaaaagttaagataacgacaacagctaaataaagatgagtgaggttaattagtacaacactgataaatatat |
193 |
Q |
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| T |
55133580 |
aaatgcaaatgaatgaagaaggaaaagttaagacaacgacaacagctaaataaagatgagtgaggttaattagtacaacactgataaatatat |
55133672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 116 - 206
Target Start/End: Original strand, 31680226 - 31680316
Alignment:
| Q |
116 |
aagaaggaaaagttaagataacgacaacagctaaataaagatgagtgaggttaattagtacaacactgataaatatatagtttcacacaac |
206 |
Q |
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| T |
31680226 |
aagaaggaaaagttaaggtaacgacaacagctaaataaagatgagtgaggttaattagtacaacactgataaatatatagtttcacacaac |
31680316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 116 - 206
Target Start/End: Complemental strand, 31918470 - 31918380
Alignment:
| Q |
116 |
aagaaggaaaagttaagataacgacaacagctaaataaagatgagtgaggttaattagtacaacactgataaatatatagtttcacacaac |
206 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
31918470 |
aagaaggaaaagttaaggtaacgacaacagctaaataaagatgagtgaggttaattagtacagcactgataaatatatagtttcacacaac |
31918380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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