View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4660_low_39 (Length: 231)
Name: NF4660_low_39
Description: NF4660
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4660_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 50108931 - 50109148
Alignment:
| Q |
4 |
atgatttggttagataagaaagtttcttatgatcacttacatgtttttggatgtaaagcatcctgtaaagagtcaaaattgtgtgtttagtggctactac |
103 |
Q |
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| T |
50108931 |
atgatttggttatataagaaagtttcttatgatcccttacatgtttttggatgtaaagcatcctgtaaagagtcaaaattgtgtgtttagtggctactac |
50109030 |
T |
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| Q |
104 |
ctagatggggctcgttacaagttttattatgttgttatgaagaaacttatcggatgttgtgatgttgatttcatagaagacaagtagttgacagacattg |
203 |
Q |
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| T |
50109031 |
ctagatggagctcgttacaagttttattatgttgttatgaagaaacttatcagatgttgtgatgttgatttcatagaagacaagtagttgacagacattg |
50109130 |
T |
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| Q |
204 |
atagaattagtgatgatg |
221 |
Q |
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| T |
50109131 |
atagaattagtgatgatg |
50109148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 162
Target Start/End: Complemental strand, 28228738 - 28228603
Alignment:
| Q |
26 |
tttcttatgatcacttacatgtttttggatgtaaagcatcctgtaaagagtcaaaattgtgtgtttagtggctactacctagatggggctcgttacaagt |
125 |
Q |
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| T |
28228738 |
tttcttatgaccacttatgtgttttcggatgcaaaacata-tgtgaagagtcaacattgtatgtttctttgctatgacttagatggagctgattacaggt |
28228640 |
T |
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| Q |
126 |
tttattatgttgttatgaagaaacttatcggatgttg |
162 |
Q |
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| T |
28228639 |
tttatgattgtgatatgaagaaacttatcggatgttg |
28228603 |
T |
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